Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1313 ATGGAGAAATCTGGATATGGTCGCGACGGAATTTTCAGGTCCTTACGCCCTCCCATCGTCTTCCCCAAAGACCCCAATCTCTCCATGGTTTCTTTCCTTTTCCGAAACTCATCGTCTTATCCAAACAGACTCGCCATTGTTGATGCAGAAACCTCCGATTCGGTTTCGTATTCTCAGCTCAAATCCTCCGCAATTAGGGTTTCCAACGCCTTCCTCCAATTGGGTATCCAGAAAAACGACGTGGTCTTGATTTTCGCCCCAAATTCTGTTCAATTCTCCATTTGTTTCATTGGAATCGTTGCCATTGGGGCTGTTGTAACCACTTGTAATCCTGTCTACACGGTTTTTGAGTTAACCAAGCAAGTTACCGATGCTAAGCCCAAGCTTGTGATATCTGTGGCTGAATTATGGGATAAAGTGAAGGATCTAAACATCCCAACAGTGTTACTAGACAGGGAAATTCCTTCGGGGATCATCCCGTCTTCGAAACTTTTCGGTTTCGATGATTTGATGAACTTGGCTGGGGATAAGCCCGGCTCTGAGTTCCCAATAGTTGGGGTAAAACAGGGAGACACAGCTGCACTTCTGTACTCGTCGGGCACGACGGGTGCGAGTAAGGGTGTGATTTTGACTCATGGAAACTTCATAACATCGTCCGTGATGATCACCATGGATCAGTCGTTCGGGGATGGCGAAAATGGGGTGTTTCTGAACTTTTTGCCAATGTTTCATGTGTTTGGATTGGCTTGTATAACATGCGCACAGCTTCAGAAAGGAAACACCATTGTGTCTATGTCGAAGTTTAACTTGGAGAAGGCCTTGTGGGCTGTGGAGAAGTACAAGGTGACTGATCTTTGGGTTGTGCCGCCTGTTGTGCTTGCTTTGGCTAAGCAGAGTGTGGTGGAGAAGTACAATCTTTCGTCGGTGAAGCGTGTCGGTTCGGGGGCAGCGCCTCTCGGGAAGGAGTTGATGGAGGAATGTGCTAACAACATTCCCAGTGCTGTTGTTCTCCAGGGTTATGGTATGACTGAGACTTGTGGAATTGTTTCTTTGGAGAATCCAGCAGTTGGCAAACGAAATTCTGGTTCAGCTGGAATGCTTGCATCTGGTGTTGAGGCTCGAATAGTTAGTGTAGATACTTTAAAGCCTCTCCCTCCTAATCAATATGGAGAAATACATGTTCGGGGACCAAATATGATGCTCGGTTACTTCAACAATCCACAGGCCACGAAGCAAACTATTGATAAACATGGCTGGGTGCATACTGGAGACCTTGGATACTTTGATGAAAACGGGCAGCTTTATGTTGTTGACCGAATCAAGGAACTCATCAAGTACAAAGGTTTTCAGGTTGCACCAGCTGAGCTCGAAGCACTGTTGGTTTCTCACCCTGAGATACTAGATGCAGTCGTCATTCCCTACCCTGATGCTGAAGCTGGAGAAGTTCCAATCGCATATGTCGTTCAATCTACCAATAGTTCTTTGACTGAAGACGACATCCTCAAATTCGTTGCTGATCAGGTTTCTCCTTACAAAAGGTTAAGAAGAGTGACATTCATCAGCAGTGTCCCCAAGTCTGTTTCTGGGAAAATACTCAGAAGAGAACTCATTGAGAAAGTAAGAGCTAAAATTTAA 1635 45.63 MEKSGYGRDGIFRSLRPPIVFPKDPNLSMVSFLFRNSSSYPNRLAIVDAETSDSVSYSQLKSSAIRVSNAFLQLGIQKNDVVLIFAPNSVQFSICFIGIVAIGAVVTTCNPVYTVFELTKQVTDAKPKLVISVAELWDKVKDLNIPTVLLDREIPSGIIPSSKLFGFDDLMNLAGDKPGSEFPIVGVKQGDTAALLYSSGTTGASKGVILTHGNFITSSVMITMDQSFGDGENGVFLNFLPMFHVFGLACITCAQLQKGNTIVSMSKFNLEKALWAVEKYKVTDLWVVPPVVLALAKQSVVEKYNLSSVKRVGSGAAPLGKELMEECANNIPSAVVLQGYGMTETCGIVSLENPAVGKRNSGSAGMLASGVEARIVSVDTLKPLPPNQYGEIHVRGPNMMLGYFNNPQATKQTIDKHGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIPYPDAEAGEVPIAYVVQSTNSSLTEDDILKFVADQVSPYKRLRRVTFISSVPKSVSGKILRRELIEKVRAKI 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28858233 28861506 + Sed0017117.1 Sed11g1313 729959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1313 544 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Sed11g1313 544 Gene3D - 442 543 IPR045851 -
Sed11g1313 544 Pfam AMP-binding enzyme 35 404 IPR000873 -
Sed11g1313 544 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Sed11g1313 544 SUPERFAMILY Acetyl-CoA synthetase-like 17 542 - -
Sed11g1313 544 Gene3D - 9 441 IPR042099 -
Sed11g1313 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 536 - GO:0016405(PANTHER)
Sed11g1313 544 CDD 4CL 21 536 - -
Sed11g1313 544 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Sed11g1313 544 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1382 Sed-Chr4:28205449 Sed11g1313 Sed-Chr11:28858233 8.20E-170 dispersed
Sed04g1383 Sed-Chr4:28205449 Sed11g1313 Sed-Chr11:28858233 8.20E-170 dispersed
Sed05g0503 Sed-Chr5:3466717 Sed11g1313 Sed-Chr11:28858233 2.00E-48 dispersed
Sed11g1313 Sed-Chr11:28858233 Sed13g2178 Sed-Chr13:26382796 9.30E-121 dispersed
Sed11g1313 Sed-Chr11:28858233 Sed04g1381 Sed-Chr4:28205449 5.40E-185 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1313 K01904 - csv:101220141 955.281