Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1319 ATGGCGCTCGACAACTGCATTCGACTGAGCACCGCCGCCGCCATGTGCGCCACCACCTCCATCCCCAAATCTCACCCTTTCTCTTCTAATTTCTACCCCAAAACGACCGTTTCCCTTCACCGCCGCCACATTCTCAAGTCCTCCGCCGTCTCCACCACCAGAAAACTCCGCTCCGTCGCCTGCAAAGCTCGCGGCGCCGTTGACGACGTGAAAGAAGTTACAGAGTCAAGCTGGGAGGAATTGGTGGTGGAGAACGAGAAGGCGGTGGTGCTGGTCGACTTTTGGGCGCCGTGGTGCGGACCGTGCAAGATGATTGAGCCAGTGATCAAGGAATTGGCGCAGGATTATGCTGGTAAAATAGTGTGTTTGAAGCTTAATACCGATGCCAGCCCTAATGTGGCTTCTAAATATGGGATTAGGAGCATTCCCACGGTTCTGTTCTTCAAGAATGGACAGAAGAAAGAGAGCGTTATTGGGGCTGTCCCTAAATCTACCTTGTCTGCCACCATTGATAAGTATCTTGACCTTTGA 531 52.54 MALDNCIRLSTAAAMCATTSIPKSHPFSSNFYPKTTVSLHRRHILKSSAVSTTRKLRSVACKARGAVDDVKEVTESSWEELVVENEKAVVLVDFWAPWCGPCKMIEPVIKELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKKESVIGAVPKSTLSATIDKYLDL 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28954127 28955796 + Sed0012698.1 Sed11g1319 729965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1319 176 CDD TRX_family 76 171 - -
Sed11g1319 176 ProSitePatterns Thioredoxin family active site. 91 109 IPR017937 -
Sed11g1319 176 NCBIfam thioredoxin 74 173 IPR005746 GO:0015035(InterPro)
Sed11g1319 176 PRINTS Thioredoxin family signature 90 98 - -
Sed11g1319 176 PRINTS Thioredoxin family signature 138 149 - -
Sed11g1319 176 PRINTS Thioredoxin family signature 98 107 - -
Sed11g1319 176 ProSiteProfiles Thioredoxin domain profile. 45 175 IPR013766 -
Sed11g1319 176 PANTHER GEO12009P1 46 174 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Sed11g1319 176 FunFam Thioredoxin 65 174 - -
Sed11g1319 176 SUPERFAMILY Thioredoxin-like 59 175 IPR036249 -
Sed11g1319 176 Gene3D Glutaredoxin 58 175 - -
Sed11g1319 176 Pfam Thioredoxin 70 172 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1319 K03671 - - csv:101218257 258.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1868 Sed-Chr7:28970637 Sed11g1319 Sed-Chr11:28954127 1.90E-35 dispersed
Sed10g2026 Sed-Chr10:36816966 Sed11g1319 Sed-Chr11:28954127 1.90E-24 dispersed
Sed11g1319 Sed-Chr11:28954127 Sed13g1607 Sed-Chr13:21275685 1.00E-12 dispersed
Sed11g1319 Sed-Chr11:28954127 Sed10g0968 Sed-Chr10:7910197 3.60E-13 transposed
Sed11g1319 Sed-Chr11:28954127 Sed01g2529 Sed-Chr1:18889181 3.60E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1199 Blo01g01324 Blo12g01109 . Bda03g00029 . Bpe04g00019 . . Cmo04g02534 Cmo15g00640 . . . . Sed11g1319 . Cpe13g00660 Bhi04g01828 Tan11g1203 Cmetu01g1872 . Hepe02g2753 . Lcy10g1305 Cla08g00654 Cam08g1084 Cec08g0670 Cco08g0779 Clacu08g0788 . Cre08g0593 . . Cone17ag0803 Cone20ag0407 . . . Cme03g00422 . . . . . . . . . . . . . Car04g02331 Car15g00581 Cpe01g02094 . . . . . . . . . . . . . . . Lsi08g00514 . Chy03g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008381 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35