Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1321 ATGGTAACATCCGGGCCACCCGCTCCTATGGGTGGTGGTGGTGCACAGTCTGTTTCGCCGTCCCTTATGCGATCTAATTCTGCAATGCTGGGAGCTCAAGGTGGTCTGCTGCCTTCTCAGGCGGCGTTTTCTTCGCTTGTATCGCCCCGCAATCAGTTCAATAATATGAATATGCTTGGTAATATGTCCAATGTGTCGTCTCTCATTAATCAATCATTTGGAAATGGGGCTCCTAATTCTGGACTTCCATGTCCTGGCAGTAGCCACCCGGGTGCGGAGCCGGACCCTCTTTCTGGCGCTGGCAATGGAATGAGCTTTAATAATCCGTCGTCCTCATTTGTAGCATCAAATATGACAAACCCCGTTTCGTCTGTCCAAGGGCAGAATTCTCAATTTTCTAACCTTTCTAGCAGCCAGTTGTTATCAGATCAGCAGCAGTTGCAACAACTTGAACCCCAGAACTTCCAACATACTCATCAGTCGATGGAACAGTTTTCAGCACTTCAGAGCAATCAGCAATCACAATTTCAAGCAATCCGAGGGATGACTGGTGTTGGACCTGTAAAGTTGGAGCCTCAAGTGACCAGCAATGATCTACATGGACAACAACAACAGCAGCAACAACATCATTTGCAAGCATTGAGAAGTCTTGGTCCAGCTAAATTGGAATCACAACGGCTTCAATCGCTGCGAGGTTTGGCACCAGTGAAAATGGAACCCCAACAATCCGACCAATCGTTATTTCTGCAGCAGCATCAGCATCAGCATCCACACCAACAACAACCGCAACCGCAACAGTTTCTTCATATGTCTAGACAGTCCTCTCAGGCAGCGGCTGCGCATATTAATCTAATGCACCAACAAAGGCTTTTGCATTTGCAACAACAACAGCAACAACATCTCTTAAAAACTATGCCTTCTCAACGGCCACAATTGCAACAACATTTCCAACAGCAGAACCTTCCGCTAAGATCTCCCGTAAAACCAGGGTATGAACCTGGAATGTGTGCTCGGCGACTGACTTATTACATGTATCATCAGCAAAACAGACCTGAAGACAACAACATAGATTTCTGGAGAAAATTTGTTAACGAGTACTTTGCACCTCATGCCAAAAAGAAGTGGTGCGTTTCCATGTATGGAAGTGGGCGACAAACACCTGGAGTTTTTCCTCAGGATGTATGGCATTGTGAAATATGCAATCGCAAGCCTGGACGTGGCTTTGAAGCAACTGCTGAAGTTCTTCCCAGGCTTTTTAAGATCAAGTATGAAAGTGGTACTATGGAGGAACTACTTTATATCGACATGCCTCGTGAATATCAAAATGCATCTGGTCAGATCGTTCTGGATTATGCAAAAGCAATACAGGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGCGATGGCCAACTTCGAATTGTTTTTTCTCCAGACCTTAAGATATGTTCATGGGAATTCTGTGCTCGACGCCACGAAGAACTTATTCCTAGGAGATTATTGATACCTCAGGTTAGTCATCTTGGGGCAGCAGCTCAGAAGTACCAGTCTGCCATTCAAAACGCATCGTCCAATTTATCAACTCCTGAATTGCAAAATAATTGTAACATGTTCGTGGCTTCAGCGCGACAACTAGCTAAAGCCTTGGAAGTTCCGCTGGTAAATGACTTGGGATATACAAAGAGATACGTACGTTGTCTTCAGATATCAGAAGTGGTAAATAGCATGAAGGACTTGATTGATTACAGCAAAGAAACAGGGATTGGGCCAATGGATAGTCTAGCCAAGTTTCCTCGAAGGACTAGTTCGTCATCGGGGCTTAATAATCAAGCTCAAGTTTCAGATGAGCAGCAGCAACAACAGCAATCATCTGCCCAACAGTCAAATAATAACCAGAGCTCTGTCCAGGCTTCTTCTGTGCAGCTTACTGCTAGCAATGGTGTAACCAATGTAAATAATGCCGCCAACCAACCTTCGACATCAAACTCAGCAACCACCATTGTTGGGCTTCTTCACCAGAATTCTATGAACTCCAGACAGCAGAACTCACTGGCTAATCCTAGCAACTCATATGGGGGAAGTTCTGCTCAGATTCCATCTCCTGGTTCATCCAGTACAATTCCACCCGTGCAATCGAACCCTTCTACGTTTCAGCCACCAACTCCCTCATCATCTAACAATCTTTCACAGCCATCCCATACAGCTGCAAAGAGTGCCAATCAGATGAGTGCTGCTAATTCTCCTGCAAATATCTCTATGCAACAACCCGCTTTATCCGGTGATGGTGATCCTATCGATACACAGTCCTCCGTGCAAAAGATCTTACAAGAGATGATGATGAATAATCAAATACATGGCCCAACAAGTATGGTTGGCGTAGGTTCGATTGTCAATGAAATGAAAAATATGAACGGAGTTGTGCCGACAAGCAATACCGGTCTCAACAATGGGAATTGTATAGGGGGAAATGGAACAGCCAACGGTGGCTCAGGCATGGGAGGAGGCTATGGATCAATGGGGAGTGGGCTAGGGCAGCCTGCCATGGTTAATGGAATGAGGAATGCAATTGGAAATAATTCCATTATGAACAGACGAATAGGAATGGCGTCGCTCGCACTAGAACAAAGCATGAACGGTCAACCACAGGATTTGGGGAACCAGCAGCTTCTAAGCGGACCAGGAGCGGTAAATGGCTTTAGTAATCTCCAATATGACTGGAAGCCATCCCCATGA 2730 45.42 MVTSGPPAPMGGGGAQSVSPSLMRSNSAMLGAQGGLLPSQAAFSSLVSPRNQFNNMNMLGNMSNVSSLINQSFGNGAPNSGLPCPGSSHPGAEPDPLSGAGNGMSFNNPSSSFVASNMTNPVSSVQGQNSQFSNLSSSQLLSDQQQLQQLEPQNFQHTHQSMEQFSALQSNQQSQFQAIRGMTGVGPVKLEPQVTSNDLHGQQQQQQQHHLQALRSLGPAKLESQRLQSLRGLAPVKMEPQQSDQSLFLQQHQHQHPHQQQPQPQQFLHMSRQSSQAAAAHINLMHQQRLLHLQQQQQQHLLKTMPSQRPQLQQHFQQQNLPLRSPVKPGYEPGMCARRLTYYMYHQQNRPEDNNIDFWRKFVNEYFAPHAKKKWCVSMYGSGRQTPGVFPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTMEELLYIDMPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSHLGAAAQKYQSAIQNASSNLSTPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKETGIGPMDSLAKFPRRTSSSSGLNNQAQVSDEQQQQQQSSAQQSNNNQSSVQASSVQLTASNGVTNVNNAANQPSTSNSATTIVGLLHQNSMNSRQQNSLANPSNSYGGSSAQIPSPGSSSTIPPVQSNPSTFQPPTPSSSNNLSQPSHTAAKSANQMSAANSPANISMQQPALSGDGDPIDTQSSVQKILQEMMMNNQIHGPTSMVGVGSIVNEMKNMNGVVPTSNTGLNNGNCIGGNGTANGGSGMGGGYGSMGSGLGQPAMVNGMRNAIGNNSIMNRRIGMASLALEQSMNGQPQDLGNQQLLSGPGAVNGFSNLQYDWKPSP 909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28958595 28967706 - Sed0026488.2 Sed11g1321 729967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1321 909 MobiDBLite consensus disorder prediction 596 638 - -
Sed11g1321 909 MobiDBLite consensus disorder prediction 1 21 - -
Sed11g1321 909 MobiDBLite consensus disorder prediction 677 745 - -
Sed11g1321 909 MobiDBLite consensus disorder prediction 101 145 - -
Sed11g1321 909 MobiDBLite consensus disorder prediction 239 277 - -
Sed11g1321 909 MobiDBLite consensus disorder prediction 589 638 - -
Sed11g1321 909 PANTHER LIM DOMAIN-BINDING PROTEIN 1 900 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
Sed11g1321 909 MobiDBLite consensus disorder prediction 238 277 - -
Sed11g1321 909 MobiDBLite consensus disorder prediction 79 145 - -
Sed11g1321 909 Pfam LIM-domain binding protein 339 593 IPR029005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0449 Sed-Chr3:2690155 Sed11g1321 Sed-Chr11:28958595 0.00E+00 dispersed
Sed11g1321 Sed-Chr11:28958595 Sed13g0163 Sed-Chr13:1039241 5.00E-95 dispersed
Sed11g1320 Sed-Chr11:28958595 Sed11g1321 Sed-Chr11:28958595 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1321 - - - 0.0