Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1334 ATGGAAACCAGACTCGCCGCCGCTCTCGGCCTTCCCTCGCCGGAATTCATTAGTTATCCTTCTCTTTTCGAATTCCCCACTCTTTTCTCCAGCTTCGATTCACTTCTCGCCGGAAACAGATCCTCCACCAGACACCGGAATCAATTCCATCACTCTCCACTTCCATTTTCTTCCTTATCCTTATCCACCGAAGAGCCAATTTTCACTCCCAAACCCCCAAAACCCCCCAAAATCCAAACCCTAATGAAGAAGAACTTATCCGTCCTCGAACGGGCACTCGTCGGCGCCGGCGGAGGCGCCATCGCCGGCGCCTTCACGTACGTGTGCCTCCTCCCAATCGACACCGTCAAAACCAAGCTCCAGGCGAAAGGGGCGTCCGAGATTTACAAGGGCACATTCGACGCCATCGTCAAAACCTTCCAATCCAGAGGGATTCTAGGGTTTTACAGCGGAATTTCCGCTGTAATCGTCGGCTCTGCAGCTTCCTCCGCCGTGTATTTTGGAACCTGCGAGTTCGGTAAGTCGATTCTGTCGAAATTCGATTGCCCTAATTTGCTTATTCCCCCAATTGCTGGGGCTATGGGGAATATCATCTCCTCGGCGATAATGGTGCCGAAGGAGTTGATTACGCAGCGAATGCAGGTTGGGGCTAAAGGGAGGTCTTGGCAGGTTTTGATTCAGATTCTTGAGAAAGATGGTGTAATGGGTCTTTATGCTGGCTATTTTGCTACATTGCTTAGGAATTTACCTGCTGGGGTTTTGAGTTACTCTTCATTTGAGTATTTGAAAGCTGCGGTTCTGAACCGGACGAAGAGTAGCAACCTCGAACCGATACAGAGTGTTTGTTGTGGAGCATTGGCGGGTGTTATATCGGCTACTCTTACGACTCCTCTTGATGTGGTGAAGACTAGGTTGATGACTCAGGTTCGTGGGGAGGCTTCGAATAAAGTTTCGGCTGTAATGTACAGCGGGGTATCGTCTACGATCAAGCAGATATTGCAGGAAGAAGGGTGGATTGGATTAACCCGTGGGATGGGTCCTAGAGTTGTGCACAGTGCTTGCTTTGCGGCGATTGGCTACTTTGCTTTCGAGACGGCGAAACTTGCCATTTTGCATCATTATCTTAGACAGAAGGAGGCTTCAGAATTGGCTTCTGCTTCAACTTGA 1167 49.79 METRLAAALGLPSPEFISYPSLFEFPTLFSSFDSLLAGNRSSTRHRNQFHHSPLPFSSLSLSTEEPIFTPKPPKPPKIQTLMKKNLSVLERALVGAGGGAIAGAFTYVCLLPIDTVKTKLQAKGASEIYKGTFDAIVKTFQSRGILGFYSGISAVIVGSAASSAVYFGTCEFGKSILSKFDCPNLLIPPIAGAMGNIISSAIMVPKELITQRMQVGAKGRSWQVLIQILEKDGVMGLYAGYFATLLRNLPAGVLSYSSFEYLKAAVLNRTKSSNLEPIQSVCCGALAGVISATLTTPLDVVKTRLMTQVRGEASNKVSAVMYSGVSSTIKQILQEEGWIGLTRGMGPRVVHSACFAAIGYFAFETAKLAILHHYLRQKEASELASAST 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29090661 29096655 - Sed0024209.1 Sed11g1334 729980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1334 388 ProSiteProfiles Solute carrier (Solcar) repeat profile. 90 176 IPR018108 -
Sed11g1334 388 FunFam protein MITOFERRINLIKE 1, chloroplastic 221 388 - -
Sed11g1334 388 Pfam Mitochondrial carrier protein 275 371 IPR018108 -
Sed11g1334 388 Pfam Mitochondrial carrier protein 98 179 IPR018108 -
Sed11g1334 388 Pfam Mitochondrial carrier protein 190 267 IPR018108 -
Sed11g1334 388 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 84 379 - GO:0000095(PANTHER)|GO:0005743(PANTHER)|GO:0009941(PANTHER)
Sed11g1334 388 FunFam Protein MITOFERRINLIKE 1, chloroplastic 60 220 - -
Sed11g1334 388 Gene3D Mitochondrial carrier domain 219 388 IPR023395 -
Sed11g1334 388 ProSiteProfiles Solute carrier (Solcar) repeat profile. 275 369 IPR018108 -
Sed11g1334 388 ProSiteProfiles Solute carrier (Solcar) repeat profile. 183 265 IPR018108 -
Sed11g1334 388 SUPERFAMILY Mitochondrial carrier 94 364 IPR023395 -
Sed11g1334 388 Gene3D Mitochondrial carrier domain 54 218 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1334 K15111 - - csv:116404632 604.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0789 Sed-Chr5:6206303 Sed11g1334 Sed-Chr11:29090661 2.40E-30 dispersed
Sed05g0790 Sed-Chr5:6206303 Sed11g1334 Sed-Chr11:29090661 2.40E-30 dispersed
Sed11g1334 Sed-Chr11:29090661 Sed11g1377 Sed-Chr11:29777421 2.00E-32 dispersed
Sed11g1334 Sed-Chr11:29090661 Sed03g0468 Sed-Chr3:2794746 4.70E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1243 . . . . . . . . Cmo04g02550 . . . . . Sed11g1334 . . Bhi04g01803 Tan11g1171 Cmetu03g1357 . Hepe02g2779 . Lcy10g1329 Cla08g00676 Cam08g1106 Cec08g0691 Cco08g0800 Clacu08g0812 . Cre08g0616 . . Cone17ag0795 Cone20ag0392 . . . Cme03g01094 Blo17g00218 Blo18g00217 . Bda13g01526 Bpe02g01604 Bpe14g00335 Bma01g00866 Bma02g00276 . . . . . Car04g02347 . Cpe01g02106 . . . . . . . . . . . . . . . Lsi08g00608 . Chy03g00543 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006009 3 1 2 2 2 1 1 1 1 2 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 2 1 39