Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1345 | ATGGATTTGAACTTCTCCGCCGGAAAACAGCCGCAGAAGGCGGCGACGACGGACACAGAGTACACGCCGGAGGCACCACAGCGCGGCGGCTACCACCACCGGCGCTCCCACTCCGACACCTCCTTCCGCTTCGCCAATTTCGACGATCTCCTCCTCTTCGAACCTCCAGATCTCGATTCGCCGTCTTCTCTTCCTTATCCCTCGCCAGCGGAGCCCGTCACGGCACTCGATTCCTTCAATTCCAAATCCTCAAACCCTAGGGTTGAGATCGGCAACTGCGATTCGGTCTTCGGCGCTCACTGCCGGAGCTTGTCGATGGATTCGGAGTTCTTCGATCGCTTCGGAATGGCTGGAGACGGCAGTGACGGTGGCGGTAGAGCGTCGGCGACGGCGACATCGTCGTCGTTTGAAGGTGGTGAGGAGTCTATTGGCGTAACGGATGGCTTCAAGAAGGCTATGGCGCCTGATAAGCTTGCTGAGCTTGCTTTGATGGATCCTAAAAGAGCTAAGAGGATTTTGGCGAATAGACAATCAGCTACACGATCGAAGGAGAGGAAAATACGTTACACAAACGAATTAGAGAAGAAATTGCAGGTGCTTCAATCAGAAGCCACTTCCCTTTCTGCACAGATCACAGTGTTACAGAGAGATACCACTGGATTGACCACTGAGAACAGAGAACTCAAGCTAAGGTTGCAGGCCATGGAGCAGCAGGCCCAACTGAGAGATGCCTTGAATGATACACTGAGGGAGGAAGTGCAGCATCTTAAGATAGTTGCTGCCCAACTGCCTATTGCAAATGGCAACTCATTCAACATTGGAGGGCTACCACTCATTATTCAGTATGGCAACTCTATTAACCATCAACAGCAACAGATGCTTCACCTGTCTCAACCTGATGCTCGAGGAGGGTCTTCCCCGTCCGAGCTTCCCGGAGCTTGA | 942 | 52.97 | MDLNFSAGKQPQKAATTDTEYTPEAPQRGGYHHRRSHSDTSFRFANFDDLLLFEPPDLDSPSSLPYPSPAEPVTALDSFNSKSSNPRVEIGNCDSVFGAHCRSLSMDSEFFDRFGMAGDGSDGGGRASATATSSSFEGGEESIGVTDGFKKAMAPDKLAELALMDPKRAKRILANRQSATRSKERKIRYTNELEKKLQVLQSEATSLSAQITVLQRDTTGLTTENRELKLRLQAMEQQAQLRDALNDTLREEVQHLKIVAAQLPIANGNSFNIGGLPLIIQYGNSINHQQQQMLHLSQPDARGGSSPSELPGA | 313 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 29504717 | 29508203 | - | Sed0019060.1 | Sed11g1345 | 729991 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1345 | 313 | Pfam | bZIP transcription factor | 167 | 224 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1345 | 313 | SMART | brlzneu | 163 | 227 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1345 | 313 | Gene3D | - | 166 | 218 | - | - | |
Sed11g1345 | 313 | SUPERFAMILY | Leucine zipper domain | 167 | 219 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1345 | 313 | MobiDBLite | consensus disorder prediction | 60 | 85 | - | - | |
Sed11g1345 | 313 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 21 | 295 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed11g1345 | 313 | MobiDBLite | consensus disorder prediction | 118 | 142 | - | - | |
Sed11g1345 | 313 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Sed11g1345 | 313 | MobiDBLite | consensus disorder prediction | 126 | 140 | - | - | |
Sed11g1345 | 313 | Coils | Coil | 190 | 238 | - | - | |
Sed11g1345 | 313 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 165 | 228 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1345 | 313 | CDD | bZIP_plant_RF2 | 168 | 217 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1345 | 313 | MobiDBLite | consensus disorder prediction | 291 | 313 | - | - | |
Sed11g1345 | 313 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g2108 | Sed-Chr10:37574587 | Sed11g1345 | Sed-Chr11:29504717 | 1.30E-67 | dispersed | |
Sed10g2109 | Sed-Chr10:37574587 | Sed11g1345 | Sed-Chr11:29504717 | 8.50E-45 | dispersed | |
Sed11g1345 | Sed-Chr11:29504717 | Sed12g0691 | Sed-Chr12:4124522 | 3.30E-38 | dispersed | |
Sed11g1345 | Sed-Chr11:29504717 | Sed03g0479 | Sed-Chr3:2914077 | 6.00E-96 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39977 | PF00170 | bZIP_1 | 1.70E-07 | CL0018 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1345 | K20557 | - | csv:101215277 | 336.65 |