Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1345 ATGGATTTGAACTTCTCCGCCGGAAAACAGCCGCAGAAGGCGGCGACGACGGACACAGAGTACACGCCGGAGGCACCACAGCGCGGCGGCTACCACCACCGGCGCTCCCACTCCGACACCTCCTTCCGCTTCGCCAATTTCGACGATCTCCTCCTCTTCGAACCTCCAGATCTCGATTCGCCGTCTTCTCTTCCTTATCCCTCGCCAGCGGAGCCCGTCACGGCACTCGATTCCTTCAATTCCAAATCCTCAAACCCTAGGGTTGAGATCGGCAACTGCGATTCGGTCTTCGGCGCTCACTGCCGGAGCTTGTCGATGGATTCGGAGTTCTTCGATCGCTTCGGAATGGCTGGAGACGGCAGTGACGGTGGCGGTAGAGCGTCGGCGACGGCGACATCGTCGTCGTTTGAAGGTGGTGAGGAGTCTATTGGCGTAACGGATGGCTTCAAGAAGGCTATGGCGCCTGATAAGCTTGCTGAGCTTGCTTTGATGGATCCTAAAAGAGCTAAGAGGATTTTGGCGAATAGACAATCAGCTACACGATCGAAGGAGAGGAAAATACGTTACACAAACGAATTAGAGAAGAAATTGCAGGTGCTTCAATCAGAAGCCACTTCCCTTTCTGCACAGATCACAGTGTTACAGAGAGATACCACTGGATTGACCACTGAGAACAGAGAACTCAAGCTAAGGTTGCAGGCCATGGAGCAGCAGGCCCAACTGAGAGATGCCTTGAATGATACACTGAGGGAGGAAGTGCAGCATCTTAAGATAGTTGCTGCCCAACTGCCTATTGCAAATGGCAACTCATTCAACATTGGAGGGCTACCACTCATTATTCAGTATGGCAACTCTATTAACCATCAACAGCAACAGATGCTTCACCTGTCTCAACCTGATGCTCGAGGAGGGTCTTCCCCGTCCGAGCTTCCCGGAGCTTGA 942 52.97 MDLNFSAGKQPQKAATTDTEYTPEAPQRGGYHHRRSHSDTSFRFANFDDLLLFEPPDLDSPSSLPYPSPAEPVTALDSFNSKSSNPRVEIGNCDSVFGAHCRSLSMDSEFFDRFGMAGDGSDGGGRASATATSSSFEGGEESIGVTDGFKKAMAPDKLAELALMDPKRAKRILANRQSATRSKERKIRYTNELEKKLQVLQSEATSLSAQITVLQRDTTGLTTENRELKLRLQAMEQQAQLRDALNDTLREEVQHLKIVAAQLPIANGNSFNIGGLPLIIQYGNSINHQQQQMLHLSQPDARGGSSPSELPGA 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29504717 29508203 - Sed0019060.1 Sed11g1345 729991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1345 313 Pfam bZIP transcription factor 167 224 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1345 313 SMART brlzneu 163 227 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1345 313 Gene3D - 166 218 - -
Sed11g1345 313 SUPERFAMILY Leucine zipper domain 167 219 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1345 313 MobiDBLite consensus disorder prediction 60 85 - -
Sed11g1345 313 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 21 295 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed11g1345 313 MobiDBLite consensus disorder prediction 118 142 - -
Sed11g1345 313 MobiDBLite consensus disorder prediction 1 37 - -
Sed11g1345 313 MobiDBLite consensus disorder prediction 126 140 - -
Sed11g1345 313 Coils Coil 190 238 - -
Sed11g1345 313 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 165 228 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1345 313 CDD bZIP_plant_RF2 168 217 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1345 313 MobiDBLite consensus disorder prediction 291 313 - -
Sed11g1345 313 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g2108 Sed-Chr10:37574587 Sed11g1345 Sed-Chr11:29504717 1.30E-67 dispersed
Sed10g2109 Sed-Chr10:37574587 Sed11g1345 Sed-Chr11:29504717 8.50E-45 dispersed
Sed11g1345 Sed-Chr11:29504717 Sed12g0691 Sed-Chr12:4124522 3.30E-38 dispersed
Sed11g1345 Sed-Chr11:29504717 Sed03g0479 Sed-Chr3:2914077 6.00E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39977 PF00170 bZIP_1 1.70E-07 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1345 K20557 - csv:101215277 336.65