Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1346 ATGGAGCCCAACAAATTAACCCTAAGTAATTTGGAGCAACAATCCAATTTAGAGATCGAAACCAAGGAATTCGACTACTCAAAACGTGCTCAATGGCTACGCGCCGCCGTGCTTGGAGCCAACGACGGGCTCGTCTCCACGGCATCGCTCATGATGGGAGTTGGAGCTGTGAAACAAGACATCAAGGCCATGATCCTCACCGGCTTCGCCGGGTTGGTCGCAGGCGCATGCAGTATGGCCATCGGTGAGTTCGTGTCCGTTTACTCGCAGTTGGACATTGAATTGGCTCAAATGGAGAGACAGAAGTTACAAAGAAATAATTTGGAAACTCAAGGCTATGAAGAGAAACTGCCTAGCCCGATCCAAGCCGCCGCGGCCTCCGCCTTGGCTTTCTCTCTAGGAGCGATGGTGCCTTTGTTGGCTGCTTCGTTTATAGGAGACTATAAAGTAAGGCTCGTGGTGGTTGTGGCAGCGGTGACGTTGGCTCTCGGCATGTTCGGGTGGTTGGGCGCTGTCCTCGGGAAAGCATCACCGATCAAATCGGCAATGAGAGTGTTAGTCGGAGGTTGGCTAGCCATGGCCATAACCTTTGGACTAACAAAGCTAATTGGAGCAAGTGGACTCTAG 627 51.83 MEPNKLTLSNLEQQSNLEIETKEFDYSKRAQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIELAQMERQKLQRNNLETQGYEEKLPSPIQAAAASALAFSLGAMVPLLAASFIGDYKVRLVVVVAAVTLALGMFGWLGAVLGKASPIKSAMRVLVGGWLAMAITFGLTKLIGASGL 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29523951 29525097 + Sed0007933.1 Sed11g1346 729992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1346 208 Coils Coil 91 111 - -
Sed11g1346 208 Pfam VIT family 33 107 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
Sed11g1346 208 Pfam VIT family 114 200 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
Sed11g1346 208 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 10 204 IPR008217 GO:0005381(PANTHER)|GO:0005384(PANTHER)|GO:0005384(InterPro)|GO:0006880(PANTHER)|GO:0016020(PANTHER)|GO:0030026(PANTHER)|GO:0030026(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2863 Sed-Chr7:43367755 Sed11g1346 Sed-Chr11:29523951 3.00E-70 dispersed
Sed11g1346 Sed-Chr11:29523951 Sed03g0480 Sed-Chr3:2927380 4.40E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1346 K22736 - csv:116402413 325.479