Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1351 ATGGAAGGGAACATATCACAGGGAGGGTTGATTCCAGGAGGGGCTTCTTATGGAGGTCTTGATTTGCAAGGACCGTTTAAGGTTCATAATCAGCCACAACACTCTCACGCTATACATCAGCAATATCATCATCCTCACACTCGTCCGGGATCTTCGGCAAATTCTTCAATTCACGAGGGATTTACACTTTCCATGGGAGCCCTACCAAATTGTGACCATTCCCTGTCTTTGGTTGATTATAACAAGGGAGAAAGGTGTAAAAACTCACCTAGTGACGATGAGCCGAGCTTCACGGAGGATGGTTTTGATGGTCATAATGAGATGAGTAAGGGGAGGAAGGGATCGATGTGGCATCGCGTGAAGTGGACGGATAAAATGGTGAAGCTTTTGATTACAGCAGTGTCTTATATAGGAGATGACATTGGTTCTGATTTTGAAGGGAGTGGAAGAAGGAAATTTCAAATCATACAGAAGAAAGGTAAATGGAAATTGATATCAAAGGTCATGGCTGAAAGGGGTTTTCAAGTTTCACCTCAGCAATGTGAGGATAAATTTAATGACCTCAATAAGAGGTATAAGAGACTCAATGATATAATTGGGAGGGGCACTTCTTGCGAGGTTGTTGAGAACCCTGCACTTCTTGATGTCATTGATTATTTAACAGATAAAGATAAGGATGATGTGAGAAAAATTTTAAACTCAAAGCAACTGTTCTATGAGGAGATGTGTTCGTATCATAACTCGAATCGACTCCATCTGCCCCATGATCCTGCTTTGCAGCGTTCGTTGCAGTTGGCTTTCAGAGCTAGGGATGACCATGATAATGATGAGCCAAGGAGACACCAAAATGATGATGTTGATGATAATGAACATGATGAAACTGATGAGCATGATGATTTTGAGGAGAATTTTGCGCCCCATGGAGACAATAAGCGATCACTTGGGGTATTAGGAGGCTCGGTGAAGAGACTAAGGCGAGGCCAGGACCTCGACGATGCTCATGCCTGTGGAAACTCCTTGAATTCTCTTGATTGCAAAAAGAGTTTGCATGCTTACTCACAAACACAATATGCTCAAGCCGATACAGCTCACTTAGAGACCGAAAGCATGAAGGCTTCTACATCGCAAAAACAGTGGATGGAGCATTGCTTACTTCGGATGGAAGATCAGAAGCTTCAAATTCAAGTTGAAATGTTGGAATTGGAGAAACAGAAGTTCAAGTGGGAGAGATTTAACAAGAAAAAGGACCGCGAGTTGGAAAAAATGAGGATGGAAAATGAAAGGATGAAGCTTGAAAATGAACGCATTGCACTCGACTTAAAGCAAAAGGAACTCGGATCGGGATTTCATTAA 1353 42.28 MEGNISQGGLIPGGASYGGLDLQGPFKVHNQPQHSHAIHQQYHHPHTRPGSSANSSIHEGFTLSMGALPNCDHSLSLVDYNKGERCKNSPSDDEPSFTEDGFDGHNEMSKGRKGSMWHRVKWTDKMVKLLITAVSYIGDDIGSDFEGSGRRKFQIIQKKGKWKLISKVMAERGFQVSPQQCEDKFNDLNKRYKRLNDIIGRGTSCEVVENPALLDVIDYLTDKDKDDVRKILNSKQLFYEEMCSYHNSNRLHLPHDPALQRSLQLAFRARDDHDNDEPRRHQNDDVDDNEHDETDEHDDFEENFAPHGDNKRSLGVLGGSVKRLRRGQDLDDAHACGNSLNSLDCKKSLHAYSQTQYAQADTAHLETESMKASTSQKQWMEHCLLRMEDQKLQIQVEMLELEKQKFKWERFNKKKDRELEKMRMENERMKLENERIALDLKQKELGSGFH 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29538849 29541563 + Sed0011174.1 Sed11g1351 729997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1351 450 PANTHER F16F4.11 PROTEIN-RELATED 1 446 - -
Sed11g1351 450 MobiDBLite consensus disorder prediction 271 316 - -
Sed11g1351 450 MobiDBLite consensus disorder prediction 84 113 - -
Sed11g1351 450 Pfam Myb/SANT-like DNA-binding domain 119 209 IPR044822 -
Sed11g1351 450 Gene3D - 122 194 - -
Sed11g1351 450 Coils Coil 384 404 - -
Sed11g1351 450 MobiDBLite consensus disorder prediction 271 287 - -
Sed11g1351 450 MobiDBLite consensus disorder prediction 85 113 - -
Sed11g1351 450 Coils Coil 412 444 - -
Sed11g1351 450 MobiDBLite consensus disorder prediction 22 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1351 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1433 Sed-Chr4:28920642 Sed11g1351 Sed-Chr11:29538849 1.20E-46 transposed
Sed05g1133 Sed-Chr5:11426671 Sed11g1351 Sed-Chr11:29538849 1.30E-56 transposed
Sed11g1351 Sed-Chr11:29538849 Sed03g0482 Sed-Chr3:2939407 1.60E-105 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1382 . Blo12g00789 . Bda03g00389 . Bpe04g00349 Bma04g00366 . Cmo04g02563 Cmo15g00604 . . . . Sed11g1351 . Cpe13g00682 Bhi04g01778 Tan11g1141 Cmetu03g2202 . Hepe02g2794 . Lcy10g1351 Cla08g00710 Cam08g1138 Cec08g0727 Cco08g0835 Clacu08g0846 . Cre08g0647 Cone4ag1503 . Cone17ag0787 Cone20ag0381 . . . Cme03g00318 . . . . . . . . . . . . . Car04g02356 Car15g00553 Cpe01g02116 . . . . . . . . . . . . . . . . . Chy03g00512 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003875 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 3 3 1 3 1 1 2 2 0 2 2 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39978 PF13837 Myb_DNA-bind_4 2.10E-21 CL0123 Sed TF