Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1357 | ATGTCATTCCGCAGCATACTTCGGGATGTGAGGGATGGATTTGGAAGCTTATCGAGGCGTAGTTTTGAGCTGCGGCTGTCTGGCCATTCCAGGGATAAATCTCATGGACCAGTTCATGAGTTCCATGATGAACCTCTGCTAGGCCAGACTAGCCTCTGGGCTAACCTCCCACCTGAGTTATTATGTGACGTGGTCCGGAGATTGGAGGCAAGTGAAAATACTTGGCCTTCTCGGAAACATGTTGTATCTTGTGCTGCTGTATGTAGATCGTGGAGGGACATGTGCAAAGAAATCGTCAAAAGTCCAGAGCTCTCCGGGCAAATTACCTTCCCTATCGCCTTGAAGCAGCCGGGACCGCGTGATGAAACCATGAAATGCTTTATCAAAAGGAACAAATCTAATTTGACTTATCATCTTTATCTGTGCCTTAGTCCTGCTTTGCTTGTTGAGAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCAGATGATATATCAAGATCGAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTGGGAACCAAGTTCATTATATATGATACACAGCCTCCATATAACAGCAACCAAATTCCAACTCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCTCCGAAAGTCCCGGCTGGTAATTACAGCATTGCACAAATTGCATACGAGTTGAATGTGTTAGGTACGAGGGGCCCCCGGAGGATGCACTGCACCATGTACTCAATCCCCAATTCATCTCTTGAGCCAGGTTGCTCTGTTCCAGGCCAGCCCGAGCTCAAGCCTCGACCCCTCGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCGATCGATCATTCCACAGAGTTCAGCAGTTCCCACTTCTCTGATATTGCAGGAATGCTTTCTGGTGAAGATGGCGAGGGGAAGGACCGACCCTTGATTCTCCGAAACAAGGCACCGAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGGGGGAGGGTGACGGTTGCATCTGTAAAGAATTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAGCACCAGTACCGTCGCAGCCGCCTCCCCAACCCGTGCAGCCTACTCATTCCGACCACGACAAGATCATTCTTCAGTTTGGTAAGGTCGGCAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACCAAATTGGCATGTGAATAG | 1299 | 47.73 | MSFRSILRDVRDGFGSLSRRSFELRLSGHSRDKSHGPVHEFHDEPLLGQTSLWANLPPELLCDVVRRLEASENTWPSRKHVVSCAAVCRSWRDMCKEIVKSPELSGQITFPIALKQPGPRDETMKCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGNYSIAQIAYELNVLGTRGPRRMHCTMYSIPNSSLEPGCSVPGQPELKPRPLEDSFRSISFSKSIDHSTEFSSSHFSDIAGMLSGEDGEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPVQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 29602846 | 29606811 | + | Sed0027599.4 | Sed11g1357 | 730003 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1357 | 432 | CDD | F-box_AtTLP-like | 53 | 97 | - | - | |
Sed11g1357 | 432 | PANTHER | TUBBY-RELATED | 46 | 431 | - | - | |
Sed11g1357 | 432 | Pfam | F-box-like | 53 | 96 | IPR001810 | GO:0005515(InterPro) | |
Sed11g1357 | 432 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
Sed11g1357 | 432 | PRINTS | Tubby superfamily signature | 389 | 408 | IPR000007 | - | |
Sed11g1357 | 432 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Sed11g1357 | 432 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Sed11g1357 | 432 | PRINTS | Tubby superfamily signature | 410 | 432 | IPR000007 | - | |
Sed11g1357 | 432 | PRINTS | Tubby superfamily signature | 329 | 346 | IPR000007 | - | |
Sed11g1357 | 432 | PRINTS | Tubby superfamily signature | 347 | 363 | IPR000007 | - | |
Sed11g1357 | 432 | FunFam | Tubby-like F-box protein | 110 | 432 | - | - | |
Sed11g1357 | 432 | MobiDBLite | consensus disorder prediction | 368 | 387 | - | - | |
Sed11g1357 | 432 | SUPERFAMILY | F-box domain | 48 | 96 | IPR036047 | GO:0005515(InterPro) | |
Sed11g1357 | 432 | Pfam | Tub family | 114 | 427 | IPR000007 | - | |
Sed11g1357 | 432 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 432 | IPR025659 | - | |
Sed11g1357 | 432 | ProSitePatterns | Tub family signature 2. | 417 | 432 | IPR018066 | - | |
Sed11g1357 | 432 | Gene3D | - | 53 | 98 | - | - | |
Sed11g1357 | 432 | Gene3D | Tubby Protein; Chain A | 113 | 426 | IPR025659 | - | |
Sed11g1357 | 432 | ProSitePatterns | Tub family signature 1. | 347 | 360 | IPR018066 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g1355 | Sed-Chr11:29602846 | Sed11g1357 | Sed-Chr11:29602846 | 7.90E-256 | dispersed | |
Sed11g1357 | Sed-Chr11:29602846 | Sed13g0511 | Sed-Chr13:3488451 | 8.90E-183 | dispersed | |
Sed11g1356 | Sed-Chr11:29602846 | Sed11g1357 | Sed-Chr11:29602846 | 7.90E-256 | tandem | |
Sed11g1357 | Sed-Chr11:29602846 | Sed11g1358 | Sed-Chr11:29602846 | 7.90E-256 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39983 | PF01167 | Tub | 3.80E-115 | CL0395 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1357 | K19600 | - | csv:101203074 | 805.823 |