Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1357 ATGTCATTCCGCAGCATACTTCGGGATGTGAGGGATGGATTTGGAAGCTTATCGAGGCGTAGTTTTGAGCTGCGGCTGTCTGGCCATTCCAGGGATAAATCTCATGGACCAGTTCATGAGTTCCATGATGAACCTCTGCTAGGCCAGACTAGCCTCTGGGCTAACCTCCCACCTGAGTTATTATGTGACGTGGTCCGGAGATTGGAGGCAAGTGAAAATACTTGGCCTTCTCGGAAACATGTTGTATCTTGTGCTGCTGTATGTAGATCGTGGAGGGACATGTGCAAAGAAATCGTCAAAAGTCCAGAGCTCTCCGGGCAAATTACCTTCCCTATCGCCTTGAAGCAGCCGGGACCGCGTGATGAAACCATGAAATGCTTTATCAAAAGGAACAAATCTAATTTGACTTATCATCTTTATCTGTGCCTTAGTCCTGCTTTGCTTGTTGAGAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCAGATGATATATCAAGATCGAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTGGGAACCAAGTTCATTATATATGATACACAGCCTCCATATAACAGCAACCAAATTCCAACTCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCTCCGAAAGTCCCGGCTGGTAATTACAGCATTGCACAAATTGCATACGAGTTGAATGTGTTAGGTACGAGGGGCCCCCGGAGGATGCACTGCACCATGTACTCAATCCCCAATTCATCTCTTGAGCCAGGTTGCTCTGTTCCAGGCCAGCCCGAGCTCAAGCCTCGACCCCTCGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCGATCGATCATTCCACAGAGTTCAGCAGTTCCCACTTCTCTGATATTGCAGGAATGCTTTCTGGTGAAGATGGCGAGGGGAAGGACCGACCCTTGATTCTCCGAAACAAGGCACCGAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGGGGGAGGGTGACGGTTGCATCTGTAAAGAATTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAGCACCAGTACCGTCGCAGCCGCCTCCCCAACCCGTGCAGCCTACTCATTCCGACCACGACAAGATCATTCTTCAGTTTGGTAAGGTCGGCAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACCAAATTGGCATGTGAATAG 1299 47.73 MSFRSILRDVRDGFGSLSRRSFELRLSGHSRDKSHGPVHEFHDEPLLGQTSLWANLPPELLCDVVRRLEASENTWPSRKHVVSCAAVCRSWRDMCKEIVKSPELSGQITFPIALKQPGPRDETMKCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGNYSIAQIAYELNVLGTRGPRRMHCTMYSIPNSSLEPGCSVPGQPELKPRPLEDSFRSISFSKSIDHSTEFSSSHFSDIAGMLSGEDGEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPVQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29602846 29606811 + Sed0027599.4 Sed11g1357 730003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1357 432 CDD F-box_AtTLP-like 53 97 - -
Sed11g1357 432 PANTHER TUBBY-RELATED 46 431 - -
Sed11g1357 432 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Sed11g1357 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Sed11g1357 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Sed11g1357 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Sed11g1357 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Sed11g1357 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Sed11g1357 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Sed11g1357 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Sed11g1357 432 FunFam Tubby-like F-box protein 110 432 - -
Sed11g1357 432 MobiDBLite consensus disorder prediction 368 387 - -
Sed11g1357 432 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515(InterPro)
Sed11g1357 432 Pfam Tub family 114 427 IPR000007 -
Sed11g1357 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Sed11g1357 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Sed11g1357 432 Gene3D - 53 98 - -
Sed11g1357 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Sed11g1357 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1355 Sed-Chr11:29602846 Sed11g1357 Sed-Chr11:29602846 7.90E-256 dispersed
Sed11g1357 Sed-Chr11:29602846 Sed13g0511 Sed-Chr13:3488451 8.90E-183 dispersed
Sed11g1356 Sed-Chr11:29602846 Sed11g1357 Sed-Chr11:29602846 7.90E-256 tandem
Sed11g1357 Sed-Chr11:29602846 Sed11g1358 Sed-Chr11:29602846 7.90E-256 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39983 PF01167 Tub 3.80E-115 CL0395 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1357 K19600 - csv:101203074 805.823