Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1366 ATGGATTCCACTCTTGTGCAGCTATCGCCCCCTCAATCGCTCAAACACACATTCCTCAGCGCAATTCACAAATCTCCTTCCATTGGAAGAAATTTCCAGTTCCAGATTCGGAACAAGCCGGTGATTGTTCGTAGCAGTAGTAGTAGAGGCAATAGCACCAAAGCCGGCTTCGACGAAGCCGCCTTCGAGGCCGAGAGATCTCGCCTCGACGCCCAAGCTCGCAAATCCATGGCCGAAGCTTCGGCCAGGGACTCCGACGACGGCGACCCCAAAGCTTGGAAGTGGGCCATCCGGAAACGGGTTTGGGATTTCATGGAATCGAAGAACATTGCCGCCAATCCCCGACCCGTTCACCATCGGATCCCTAATTTCGTCGCCGCCATGGAAGCTGCTCATAGATTGTGCGATTTGGATGTGTTTAGGGATTCGCAATGTGTGAAGGTTAATCCGGATTCTCCTCAGAAGGGTGTGAGGCTTCTTACTCTTACGGGTGGCAAAAAACTATTAACACCTCAGCCTCGATTAAGAACAGGGTTTTTCTCCATAGTCGAATCTGGAATGCTGACTCCTGCTACCATCAACGAGGCCTGCACTTCAGTTGGGGTAGCAAAGTATGGAAAGCCAATTGGACTGGATGAAAAGATCAAAGTTGATCTGATCGTCATTGGTTCTGTTGCTGTCGACCCGAGAACAGGTGCACGGCTTGGCAAGGGAGAGGGATTTGCAGAACTCGAATATGCAATGCTGCGGTACATGGGAGCCATTGATGATTCAACTCCAATTGTTACTTCTGTGCACGATTGTCAATTGGTTGATGATATTCCAGCTGAGAAGCTATTAGTCCACGACGTGCCAGTAGACATCGTATGCACTCCGACACAGGTCATATTAACGAACACGAAAATTCCCAAACCCCAAGGCATTTACTGGGAAATGTTGTCTCCTGAGAAGCTGAGTCAAGTTCGAATACTAAGAGAGCTCAAACGTCGGATCGAACGGGAGACCGGGCAACCACTGCCGTGTGGTCCATCTGAGAAACTACCACCTACAGCGCAACGAAGCCCGAAATCTGTTAAACGTGCATCCTCTAAGAACTGA 1098 49.82 MDSTLVQLSPPQSLKHTFLSAIHKSPSIGRNFQFQIRNKPVIVRSSSSRGNSTKAGFDEAAFEAERSRLDAQARKSMAEASARDSDDGDPKAWKWAIRKRVWDFMESKNIAANPRPVHHRIPNFVAAMEAAHRLCDLDVFRDSQCVKVNPDSPQKGVRLLTLTGGKKLLTPQPRLRTGFFSIVESGMLTPATINEACTSVGVAKYGKPIGLDEKIKVDLIVIGSVAVDPRTGARLGKGEGFAELEYAMLRYMGAIDDSTPIVTSVHDCQLVDDIPAEKLLVHDVPVDIVCTPTQVILTNTKIPKPQGIYWEMLSPEKLSQVRILRELKRRIERETGQPLPCGPSEKLPPTAQRSPKSVKRASSKN 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29663961 29669651 + Sed0023841.1 Sed11g1366 730012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1366 365 FunFam 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 125 301 - -
Sed11g1366 365 Gene3D - 89 301 IPR024185 -
Sed11g1366 365 Pfam 5-formyltetrahydrofolate cyclo-ligase family 94 292 IPR002698 -
Sed11g1366 365 SUPERFAMILY NagB/RpiA/CoA transferase-like 93 311 IPR037171 -
Sed11g1366 365 MobiDBLite consensus disorder prediction 334 365 - -
Sed11g1366 365 PANTHER 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED 74 360 IPR002698 GO:0005737(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1366 K01934 - - csv:101222878 580.482
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1366 Sed-Chr11:29663961 Sed11g1367 Sed-Chr11:29663961 6.40E-134 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1354 . . . . . . . . . Cmo15g00594 . . . . Sed11g1366 . Cpe13g00688 Bhi04g01760 Tan11g1122 Cmetu03g1405 . Hepe02g2802 . Lcy10g1360 Cla08g00721 Cam08g1149 Cec08g0739 Cco08g0845 Clacu08g0857 . Cre08g0657 . . Cone17ag0777 . . . . Cme03g00300 Blo17g00140 . . Bda13g01424 . Bpe14g00433 . Bma02g00159 . . . . . . Car15g00546 . . . . . . . . . . . . . . . . Lsi08g00563 . Chy03g00497 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009182 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 34