Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1371 ATGTCATCAATCCCCTTCGCCAAAATCAAAATCTCGCCGGCCGCCGCCACTTCCCCGGCGGCATCAGCCGCAGGATCCGCTGCCGCTTCTTCCTCGCCGGCTCACAGTTCCGTCAGATTCTCTGCCTCCAAGCCTTTTGTCTTCACCATTCGGAGCTCTCAGACCGAAGGTCCGATTCGGAGACCGGCGGCTCCTTCTCTTAGAGAGCCTACGCCCCCGCCGCCGTCTCCTCCGTCGCAATCGCCTCCGTATTCGGCGGCGGCTCCTGTTGCTCAGCCGGCGGCGAAGGCGAAACAGGAAAATGCGATCACGTTGGAGTTTCAGAGGCAGAAGGCTAAGGAGCTTCAGGAGTATTTCAAGCAGAAGAAACTTGAGGAAGCTGATCAGGGACCCTTCTTTGGCTTCATTGGGAAGAATGAGATTTCTAATGGAAGGTGGGCAATGTTTGGTTTTGCTGTTGGATTGCTCACAGAATATGCAACTGGTTCAAACTTTGTTGTTCAAGTAAAAATCCTCCTCTCAAATTTTGGGATAGTAGATCTCGATTAA 549 53.01 MSSIPFAKIKISPAAATSPAASAAGSAAASSSPAHSSVRFSASKPFVFTIRSSQTEGPIRRPAAPSLREPTPPPPSPPSQSPPYSAAAPVAQPAAKAKQENAITLEFQRQKAKELQEYFKQKKLEEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVVQVKILLSNFGIVDLD 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29725975 29729501 - Sed0015682.1 Sed11g1371 730017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1371 182 MobiDBLite consensus disorder prediction 23 38 - -
Sed11g1371 182 MobiDBLite consensus disorder prediction 51 97 - -
Sed11g1371 182 Gene3D Chlorophyll a/b binding protein domain 78 175 - -
Sed11g1371 182 MobiDBLite consensus disorder prediction 65 84 - -
Sed11g1371 182 MobiDBLite consensus disorder prediction 13 38 - -
Sed11g1371 182 Coils Coil 105 125 - -
Sed11g1371 182 PANTHER OS02G0610700 PROTEIN 23 175 IPR053091 GO:0009535(PANTHER)
Sed11g1371 182 SUPERFAMILY Chlorophyll a-b binding protein 128 169 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1371 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0498 Sed-Chr3:3041852 Sed11g1371 Sed-Chr11:29725975 2.80E-55 dispersed
Sed03g0499 Sed-Chr3:3042295 Sed11g1371 Sed-Chr11:29725975 1.00E-34 dispersed
Sed11g1371 Sed-Chr11:29725975 Sed03g0497 Sed-Chr3:3041433 6.00E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1342 Blo01g01739 . . Bda03g00402 Bpe02g00203 Bpe04g00366 Bma04g00383 . Cmo04g02572 Cmo15g00589 . . . . Sed11g1371 . Cpe13g00694 Bhi04g01756 Tan11g1116 Cmetu03g0534 . Hepe02g2808 . Lcy10g1365 . . . . . . . Cone4ag1473 Cone7ag1467 . . . . . . . . Bda11g00864 . . . . . . . . . . Car04g02365 Car15g00541 Cpe01g02127 . . . . . . . . . . . . . . . Lsi08g00569 . Chy03g00492 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006504 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 38