Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1378 ATGAAGTTTCTCATCTCGTTCTTACTTCTCTCTCTTACTTCTCCAGCTTTGTTTCTCGTTGCGCTCGCTCGAGGCGGCCTCACCCGCTCCAATTCCTCAGTAGATTTCAATGGCAGTTCTGCTAGATTTTTACTTGAGGACAATAATTCTCCAGGAAGCATCATGCAAGGTTATATGACCAATAAAGAGCTTGAGCAGGCCGTTAAAGCTTTTGGTCGAAAATGTAGTAAGATTTCTAGGATATACAGTATTGGAGACAGTGTGCAAGGGTTTCCACTGTGGGTAATGGAAATCTCTGACAAGCCTGGCCAGGAAGAAGCTGAACCTGCATTTAAGTACATAGGAAATGTACATGGAGATGAACCTGTTGGCAGGGAGCTTCTTTTACAATTTGCCAACTGGATATGTGATAATTACCAGAAGGATCCATTGGCTACACTGATTGTGGAGAATGTTCACCTTCATATACTTCCATCTTTGAATCCCGATGGGTTTTCTCTTAGCAGACGTAACAATGCAAATAATATTGATCTAAACAGAGATTTCCCCGACCAGTTCTTTGTTGCCAATGATAATGAATATGAACGCCAACCTGAAACACAAGCAATAATGAAGTGGATGAGAGATGTACATTTCACTGCCTCTGCCACTTTGCATGGGGGTGCACTTGTCGCAAATTATCCATGGGATGGCACTGCAGATAAAAGCAAAGAATATTATGCGTGCCCTGATGATGAAACATTCCGATTCATGGCTGGTGTCTATAGTCGCTCACATCATAACATGTCCTTTAGCCAAGAATTTCAAGGAGGAATTACAAATGGGGCTTCATGGTACCCCATATATGGTGGCATGCAAGATTGGAACTATATACATGGTGGCTGTTTTGAGCTCACGTTAGAGATTACAGATAACAAATGGCCTCCTGCTAATGAGCTTGCTACCCTTTTCGAGTATAACAAGTTGAGCATGCTAAATCTTGTTGCGAGCCTTTTTCAGACCGGAATACATGGAAGAATTTTTTCATCGGAGAATGGAAGGCCGTTACCTGGAACCATTACACTCAAGGGAATAGATTACTTGGTTAATGCTAGTAAAACGTTTGCGGACTACCATCGTTTAGCTGCACCAAAACAGAAATATGAAGTAATTGCGACAATGCCCGGGTACAAGTCGAAGAACACGAGCATCTGGTTGGAAGAGGGAGCTACATCTCTGGACTTCATTCTTGATCCGGACACGGCAACAAAAGGAAACCCAACACAAAACTTGAATGTCTACAAGGACAATAAGCTGGACTTTGCAGGCTATATATGGGGACACTACTTTGAGGCGTATATTTTCTTGGCGGTTGTTTTAGTATTTATTTGCTTTTTATTTCAGAGGAGGATGAAATGTAGACTTTCTAAGCAAAGACTAGCAGCATTGCCAAAGAGGAGTGTGGTCTGA 1449 42.17 MKFLISFLLLSLTSPALFLVALARGGLTRSNSSVDFNGSSARFLLEDNNSPGSIMQGYMTNKELEQAVKAFGRKCSKISRIYSIGDSVQGFPLWVMEISDKPGQEEAEPAFKYIGNVHGDEPVGRELLLQFANWICDNYQKDPLATLIVENVHLHILPSLNPDGFSLSRRNNANNIDLNRDFPDQFFVANDNEYERQPETQAIMKWMRDVHFTASATLHGGALVANYPWDGTADKSKEYYACPDDETFRFMAGVYSRSHHNMSFSQEFQGGITNGASWYPIYGGMQDWNYIHGGCFELTLEITDNKWPPANELATLFEYNKLSMLNLVASLFQTGIHGRIFSSENGRPLPGTITLKGIDYLVNASKTFADYHRLAAPKQKYEVIATMPGYKSKNTSIWLEEGATSLDFILDPDTATKGNPTQNLNVYKDNKLDFAGYIWGHYFEAYIFLAVVLVFICFLFQRRMKCRLSKQRLAALPKRSVV 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29786111 29795485 - Sed0007537.1 Sed11g1378 730024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1378 482 Gene3D - 334 413 - -
Sed11g1378 482 Gene3D Zn peptidases 56 332 - -
Sed11g1378 482 FunFam Carboxypeptidase D 53 333 - -
Sed11g1378 482 CDD M14_CP_plant 58 330 - -
Sed11g1378 482 SMART zn_carb 58 318 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Sed11g1378 482 SUPERFAMILY Carboxypeptidase regulatory domain-like 335 420 IPR008969 -
Sed11g1378 482 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 2 signature. 219 229 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Sed11g1378 482 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 175 183 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Sed11g1378 482 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 84 96 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Sed11g1378 482 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 109 123 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Sed11g1378 482 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 216 229 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Sed11g1378 482 PANTHER PROTEASE M14 CARBOXYPEPTIDASE 49 405 IPR050753 GO:0004181(PANTHER)|GO:0005615(PANTHER)|GO:0006518(PANTHER)|GO:0016485(PANTHER)
Sed11g1378 482 Pfam Zinc carboxypeptidase 65 318 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Sed11g1378 482 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 1 signature. 109 131 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Sed11g1378 482 SUPERFAMILY Zn-dependent exopeptidases 54 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1378 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1320 . . . . . . . . Cmo04g02579 . . . . . Sed11g1378 . . Bhi04g01745 Tan11g1099 . . Hepe02g2814 . Lcy10g1371 Cla08g00746 Cam08g1173 Cec08g0763 Cco08g0870 Clacu08g0879 . Cre08g0681 . . . Cone20ag0364 . . . Cme03g01053 Blo17g00133 . . Bda13g01417 . . . Bma02g00153 . . . . . Car04g02372 . Cpe01g02133 . . . . . . . . . . . . . . . Lsi08g00575 . Chy03g00488 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010573 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32