Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1382 ATGGAAGGAACAATCCATCGAGTTCTTAATCTGTGTTTATTGTATCTAAGTTTAACAATGGGGGTTTCTTCTTTGTCTCCTGATGGAGAAGCCCTAATTTCTCTAATTTCTGCTGCTGGTGGTTCTTCTAAATCTGTTCTTAGTTCTTGGAATCCATCTAGTGAAAACCCTTGTTCTTGGGAAGGAATCACTTGTTCTCCTCAGAATAGAGTGATTTCACTTTCTCTTCCAAAAATGTTCTTAAACCTCTCTTATTTGCCCAATGAGTTGTCTTCTTTATCATCTCTGCAACTTCTTAATCTCTCTTCAACCAATGTTTCTGGTTCAATCCCTTCTTCGTTTGGTTTACTTACTAATCTTCGTTTGTTGGATCTTTCATCCAACAATCTCTATGGCTTAATTCCCCCTCAGCTTGGTTCTCTTTCTTCACTACAGTTTCTATTTCTGAATTCCAATAGGTTGTCTGGTAAGATTCCTCCACAGCTTTCGAATTTGAGTTCTCTGCAAAGCCTTTGCCTCAAAGATAATCTGTTTAATGGGTCCATACCATCTCGGTTTGGTTCTTTGCTGTCCCTCCAAGAGTTTCGAATCGGTGGGAACCCGTATCTTTCGGGAGAGATTCCATCGCAGATTGGGCTGCTTACTAATCTCACTACGTTCGGGGCTGCGGCTACTGCCCTTTCCGGGGCTATACCGTCTACGTTTGGGAACTTGATCAACCTACAAACTTTGTCACTCTATGATACTGAGATTTCTGGTTCAATTCCTCCTGAGTTGGGACTTTGTTCTGAGCTAAGGGATTTGTATTTGCACATGAATAAGTTGAGTGGTTATATTCCTCCTCAGCTGGGTAGGTTGCAGAAACTTACTAGTTTGTTTCTCTGGGGCAATGAGTTATCGGGGGCGATACCGTCTGAAATTTCGAATTGTTCGGCTCTTGTTGTTTTTGATGCCTCTGAGAATGATCTTTCTGGTGAAATCCCAAGTGATTTAGGGAAATCAGTGGTTCTTGAACAGTTTCATGTATCGGACAATTCAATCTCGGGTTCGATACCATGGCAGTTGGGCAACTGCACAAGCTTAACTGCCCTGCAGCTGGATAATAATCAATTATCAGGCGTAATTCCATCAGAACTTGGCAATTTGAAATCCCTGCAAAGCTTTTTCTTGTGGGGCAATTCTGTATCAGGAACCATACCATCTTCCTTTGGCAATTGTACTGAGTTATATGCACTTGATCTTTCAAGAAACAAACTCACTGGGATTATCCCAGAAGAAATTTTCGGCTTGAAGAAGTTGAGCAAGCTTTTACTCCTTGGAAATTCGTTATCTGGTGTGTTGCCACCAAGTGTTGCGAATTGTCAATCATTGGTGAGGTTGAGGCTCGGAGAAAACCAGCTTTCGGGTCAGATTCCGAAGGAGGTAGGCCGGTTGCAGAATCTCGTCTTTCTTGACTTGTATATGAATCATTTTTCGGGTGGTCTTCCGTCTGAGATTGCTAATATCACAGTTCTTGAGCTACTTGATGTGCATAATAATCATATAACTGGGGAAATTCCTCTCCTGCTTGGGGAGTTGGTGAACTTGGAGCAGCTTGATCTCAGTCGAAACAGCTTCATTGGTGAAATTCCTGAGAGCTTTGGAAACTTCAGCTATTTGAATAAACTTATTCTCAACAATAATCTACTGACTGGGTCAATTCCAAAGTCCATCAAGAACCTGGAGAAACTAACTCTACTTGATTTGAGTTACAACAATCTCTCTGGTGCTATACCACCAGAAATTGGTTACATGAAGAGCTTGTCGATCAGTCTGGACTTGAGCTCGAACTGGTTAACCGGAGAAATTCCTGAGATGATTTCCAGTTTGACACAGTTACAATCACTTGATCTTTCCCATAATATGCTTTATGGAAATATTAAAGTGTTGGGTCTCTTGACTAGTCTCACTTCCCTCAATATCTCCTACAACAATTTCTCAGGTCCTATGCCTGTAACACCATTTTTCAGAACCCTATCACAAGATGCATATTATCAGAACCTAAATCTTTGTGAATCACTAGATGGATTTATCTGTTCCTCGAGTTCAATGGGAAGAAATGGCTTAAAGTCTGCTAAAGCTGCTGCTTTAATAACCATCATTCTTGCTGTAGTTTTCATCCTAGTTTTTGCTTTGTGGATTCTAGTTTCGCGAAACCGTAAGTACATGGTGGAGAAACATTCTGGGACATTGTCGTCTGCATCAGCTGCTGAGGATTTCTCTTATCCATGGACCTTCATCCCATTTCAGAAGCTCAGTTTTTCCATAGATAACATCTTGGATTCCATGAAAGATGAAAATATTATTGGAAAAGGTTGCTCTGGGGTTGTTTATAAGGCAGACATGCCCAATGGAGAATTAGTTGCTGTAAAGAAACTGTGGAAAACAAAGCAAGATGAAGAGGCAGTTGACTCGTGTGCGGCCGAGATTCAAATTCTTGGGCATATTCGTCATCGTAACATAGTGAAGCTCATAGGTTATTGTTCCAATAGAAGTGTCAAGCTACTTCTCTACAACTACGTTCCAAACGGTAATCTGCAACAACTCTTGCAAGGAAACAGGAATTTGGACTGGGAGACGAGGTATAAGATTGCGGTCGGGATAGCCCAGGGTCTGGCTTATCTTCATCATGATTGTGTTCCAGCAATTCTTCACAGAGATGTCAAGTGCAATAACATTCTTCTGGATTCAAAGTTTGATGCTTATCTAGCAGATTTTGGCCTGGCGAAGTTGATGAACACTCCAAATTATCACCATGCAATTTCGAGAGTAGCCGGATCTTATGGTTATATCGCCCCAGAGTATGGGTACACCATGAACATAACCGAGAAGAGCGATGTCTATAGCTATGGAGTTGTTTTGCTAGCAATACTAAGCGGCCGTAGTGCAATCGAGACACAAGTCGGAGATGGTCTCCACATTGTTGAATGGGTGAAGAAGAAGATGGCAAGCTTCGAACCTGCCATATCGATACTCGATATGAAGCTCCAAAGTTTACCAGATCAGATGGTGCAAGAAATGCTTCAAACACTTGGAATAGCAATGTTTTGTGTGAACTCCTCTCCAGCAGAAAGGCCAACCATGAAGGAAGTGGTAGCATTATTGATGGAAGTAAAGAGTTCTCCAGAAGAATGGGGTAAAACCTCTTCCCAACCTCTAATAAAGCAGTCCTCAACTTTAAGTTGA 3225 41.55 MEGTIHRVLNLCLLYLSLTMGVSSLSPDGEALISLISAAGGSSKSVLSSWNPSSENPCSWEGITCSPQNRVISLSLPKMFLNLSYLPNELSSLSSLQLLNLSSTNVSGSIPSSFGLLTNLRLLDLSSNNLYGLIPPQLGSLSSLQFLFLNSNRLSGKIPPQLSNLSSLQSLCLKDNLFNGSIPSRFGSLLSLQEFRIGGNPYLSGEIPSQIGLLTNLTTFGAAATALSGAIPSTFGNLINLQTLSLYDTEISGSIPPELGLCSELRDLYLHMNKLSGYIPPQLGRLQKLTSLFLWGNELSGAIPSEISNCSALVVFDASENDLSGEIPSDLGKSVVLEQFHVSDNSISGSIPWQLGNCTSLTALQLDNNQLSGVIPSELGNLKSLQSFFLWGNSVSGTIPSSFGNCTELYALDLSRNKLTGIIPEEIFGLKKLSKLLLLGNSLSGVLPPSVANCQSLVRLRLGENQLSGQIPKEVGRLQNLVFLDLYMNHFSGGLPSEIANITVLELLDVHNNHITGEIPLLLGELVNLEQLDLSRNSFIGEIPESFGNFSYLNKLILNNNLLTGSIPKSIKNLEKLTLLDLSYNNLSGAIPPEIGYMKSLSISLDLSSNWLTGEIPEMISSLTQLQSLDLSHNMLYGNIKVLGLLTSLTSLNISYNNFSGPMPVTPFFRTLSQDAYYQNLNLCESLDGFICSSSSMGRNGLKSAKAAALITIILAVVFILVFALWILVSRNRKYMVEKHSGTLSSASAAEDFSYPWTFIPFQKLSFSIDNILDSMKDENIIGKGCSGVVYKADMPNGELVAVKKLWKTKQDEEAVDSCAAEIQILGHIRHRNIVKLIGYCSNRSVKLLLYNYVPNGNLQQLLQGNRNLDWETRYKIAVGIAQGLAYLHHDCVPAILHRDVKCNNILLDSKFDAYLADFGLAKLMNTPNYHHAISRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLAILSGRSAIETQVGDGLHIVEWVKKKMASFEPAISILDMKLQSLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSSPEEWGKTSSQPLIKQSSTLS 1074
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29833441 29837271 + Sed0020933.1 Sed11g1382 730028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1382 1074 Pfam Leucine rich repeat 384 443 IPR001611 GO:0005515(InterPro)
Sed11g1382 1074 Pfam Leucine rich repeat 528 587 IPR001611 GO:0005515(InterPro)
Sed11g1382 1074 SUPERFAMILY RNI-like 317 681 - -
Sed11g1382 1074 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g1382 1074 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 423 - -
Sed11g1382 1074 Gene3D Ribonuclease Inhibitor 184 427 IPR032675 -
Sed11g1382 1074 Gene3D Ribonuclease Inhibitor 436 688 IPR032675 -
Sed11g1382 1074 MobiDBLite consensus disorder prediction 1054 1074 - -
Sed11g1382 1074 FunFam Piriformospora indica-insensitive protein 2 424 517 - -
Sed11g1382 1074 MobiDBLite consensus disorder prediction 1056 1074 - -
Sed11g1382 1074 SUPERFAMILY Protein kinase-like (PK-like) 761 1048 IPR011009 -
Sed11g1382 1074 ProSiteProfiles Protein kinase domain profile. 776 1067 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1382 1074 FunFam Putative LRR receptor-like serine/threonine-protein kinase 761 853 - -
Sed11g1382 1074 Pfam Protein kinase domain 778 1045 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1382 1074 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515(InterPro)
Sed11g1382 1074 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515(InterPro)
Sed11g1382 1074 Pfam Leucine Rich Repeat 119 141 IPR001611 GO:0005515(InterPro)
Sed11g1382 1074 Pfam Leucine Rich Repeat 604 623 IPR001611 GO:0005515(InterPro)
Sed11g1382 1074 Pfam Leucine Rich Repeat 360 382 IPR001611 GO:0005515(InterPro)
Sed11g1382 1074 Pfam Leucine Rich Repeat 95 116 IPR001611 GO:0005515(InterPro)
Sed11g1382 1074 Pfam Leucine Rich Repeat 480 501 IPR001611 GO:0005515(InterPro)
Sed11g1382 1074 Pfam Leucine Rich Repeat 648 664 IPR001611 GO:0005515(InterPro)
Sed11g1382 1074 Pfam Leucine Rich Repeat 505 526 IPR001611 GO:0005515(InterPro)
Sed11g1382 1074 Pfam Leucine Rich Repeat 240 260 IPR001611 GO:0005515(InterPro)
Sed11g1382 1074 Gene3D Transferase(Phosphotransferase) domain 1 854 1067 - -
Sed11g1382 1074 FunFam Putative LRR receptor-like serine/threonine-protein kinase 604 688 - -
Sed11g1382 1074 PRINTS Leucine-rich repeat signature 623 636 - -
Sed11g1382 1074 PRINTS Leucine-rich repeat signature 577 590 - -
Sed11g1382 1074 SMART serkin_6 776 1052 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1382 1074 Gene3D Ribonuclease Inhibitor 27 183 IPR032675 -
Sed11g1382 1074 SUPERFAMILY L domain-like 45 396 - -
Sed11g1382 1074 FunFam LRR receptor-like serine/threonine-protein kinase 525 599 - -
Sed11g1382 1074 PANTHER OS04G0122200 PROTEIN 441 1048 IPR051809 -
Sed11g1382 1074 FunFam Nuclear pore complex protein NUP107 26 184 - -
Sed11g1382 1074 Gene3D Phosphorylase Kinase; domain 1 745 853 - -
Sed11g1382 1074 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Sed11g1382 1074 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 854 1066 - -
Sed11g1382 1074 ProSitePatterns Protein kinases ATP-binding region signature. 782 805 IPR017441 GO:0005524(InterPro)
Sed11g1382 1074 SMART LRR_typ_2 574 598 IPR003591 -
Sed11g1382 1074 SMART LRR_typ_2 286 310 IPR003591 -
Sed11g1382 1074 SMART LRR_typ_2 141 165 IPR003591 -
Sed11g1382 1074 SMART LRR_typ_2 117 140 IPR003591 -
Sed11g1382 1074 SMART LRR_typ_2 238 262 IPR003591 -
Sed11g1382 1074 SMART LRR_typ_2 93 116 IPR003591 -
Sed11g1382 1074 SMART LRR_typ_2 623 648 IPR003591 -
Sed11g1382 1074 SMART LRR_typ_2 358 382 IPR003591 -
Sed11g1382 1074 SMART LRR_typ_2 406 430 IPR003591 -
Sed11g1382 1074 SMART LRR_typ_2 526 549 IPR003591 -
Sed11g1382 1074 ProSiteProfiles Leucine-rich repeat profile. 625 647 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2846 Sed-Chr7:43276885 Sed11g1382 Sed-Chr11:29833441 5.80E-103 dispersed
Sed11g1382 Sed-Chr11:29833441 Sed12g0413 Sed-Chr12:2490362 9.50E-101 dispersed
Sed11g1382 Sed-Chr11:29833441 Sed03g0512 Sed-Chr3:3112160 3.90E-219 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79908 PF00069 Pkinase 7.90E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1382 - - - 0.0