Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1386 ATGGCGGCTGCGATTCCGGCGACGGCGATTGCCGCTACGGCGGCGATTTCTTCTCCGACTGGCTCTGTGGCCACTGGCGTCGGGTTTATTAGTTCGTCGTTGTATGTTGGCGATCTGGACCAGACTGTGAACGAGGCGCAGCTTTTGGAAGTGTTCGGCCACGCGGCTCAGGTTGTATCGATTAGGGTTTGTAGGGATCAGACTCGCAGGTCGCTTGGTTATGCTTATGTTAATTTTAACAATCATCAGGATGCTTCCAGTGCCTTGGAACATTTGAATTTCACCCCTATTAATGGGAAGCCTATCAGGATTATGATCTCTAATCGAGATCCTAGCATTCGAAGAAGTGGACATGGAAATGTTTTTATAAAAAATCTGGACAAAACGATCGATAACAAGGCACTACATGATACGTTTGCTACCTTTGGTACTGTTCTTTCTTGTAAAGTTGCCATTGATAGCAATGGTCAATCAAAAGGTTATGGATTTGTGCAATTTGAAAATGAGGAAGCTGCGGATCTTGCTATAGAAAAATTGAATGGCATGCTGCTCAATGACAAGCAAGTTTATGTTGGACATTTTATTCGACGCCAAGAAAGGGCCCGAGCAAATGGGTCGGTGTTTACTAATGTTTATGTGAAGAATTTGCCAGAAACTACCACAGATGATGAGTTAAAAAACATTTTTACCCCGCATGGTGACATTACTAGTGCAGTTGTCATGAGAGATTCGAATGGGAAGTCAAGATGTTTTGGTTTTGTGAACTTCCAGAATGCGGACTCTGCTGCTGCTGCAGTTGAAAAGTTGAATGGTACCGTCCATGGTGATGACAGGGTTTTGTATGTAGGCAGGGCTCAGAGGAAATCTGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAAAGAAAGAGTAGATTTGAAAAATTGCAAGGTGCTAATTTGTATGTCAAAAATCTTGATGACCATATTGATGATGAGAAGCTCAAAGAGTTTTTCTCTGAATATGGAACAATCACATCATGCAAGGTTATGCTTGACCAGCATGGGCGGAGCAAGGGGTCTGGTTTTGTAGCATTTTCTTCACCAGATGAAGCAACAAGAGCCTTAAATGAAATGAATGGAAAGATGAAAGGAAATAAACCTTTGTATGTGGCTATCGCCCAGCGCAAAGAAGAGAGGAAGGCTCGGCTACAGGCGCAATTTTCTCAAATCAGAGCCGCTGGAATACCCTCTTTGCCTTCCGGAATTCCGGGATTTCATCCAGCGACACCACGACTTGCTGCACCTCAGCAGTTGTATTATGGTCCGGGAAATCCCGGGCTGGTGCCCCCGCAACCTTCTGGATACGGCTTCCAGCCTCAACTTATGACCGGAATGCGACCTGGTATGAACCCGAACTTTATCATGCCTTACCAATTTTCGAGGCAAGGACAACCTGTGCCACGCTCTGGAATGAGGCGAGGCGGAAATTCACAACCAGTTCAGCAGCAGTTAATGCACCGGAGCTCCGGACAAGGTTTTCGATACATTAACAACGTCCAAAATGGCTTAGAGTCACCAGTCCTGCCTCAAGGTTTTGTTGGTCCAATGATGCCCTTTGATAATTCAAGAGTGTCTAGCTCTCCCATTGACAACCAGCGAAGGGTCGTGCCTTCTTCAACACTCGCTTCTACGTTAGCTTCCGCCACACCCGAAAATCAGCGTTTGATGCTTGGCGAGCAACTGTATCCACTCGTGGAACGTCTCAAGCCAGGCAATGCAGCAAAGGTTACTGGAATGTTGCTGGAGATGGATCAACCCGAAGTCCTTCATCTCATCGAGTCGCCGGATGACTTGAAGAGTAAGGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCATCGGAACCCGAGCTCTCTGACCAGCTGGGGTCACTAGCCTTGGCCAAATGA 1935 46.56 MAAAIPATAIAATAAISSPTGSVATGVGFISSSLYVGDLDQTVNEAQLLEVFGHAAQVVSIRVCRDQTRRSLGYAYVNFNNHQDASSALEHLNFTPINGKPIRIMISNRDPSIRRSGHGNVFIKNLDKTIDNKALHDTFATFGTVLSCKVAIDSNGQSKGYGFVQFENEEAADLAIEKLNGMLLNDKQVYVGHFIRRQERARANGSVFTNVYVKNLPETTTDDELKNIFTPHGDITSAVVMRDSNGKSRCFGFVNFQNADSAAAAVEKLNGTVHGDDRVLYVGRAQRKSEREAELKAKFEQERKSRFEKLQGANLYVKNLDDHIDDEKLKEFFSEYGTITSCKVMLDQHGRSKGSGFVAFSSPDEATRALNEMNGKMKGNKPLYVAIAQRKEERKARLQAQFSQIRAAGIPSLPSGIPGFHPATPRLAAPQQLYYGPGNPGLVPPQPSGYGFQPQLMTGMRPGMNPNFIMPYQFSRQGQPVPRSGMRRGGNSQPVQQQLMHRSSGQGFRYINNVQNGLESPVLPQGFVGPMMPFDNSRVSSSPIDNQRRVVPSSTLASTLASATPENQRLMLGEQLYPLVERLKPGNAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELSDQLGSLALAK 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29852935 29857003 - Sed0001395.1 Sed11g1386 730032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1386 644 Gene3D - 549 629 - -
Sed11g1386 644 SMART rrm1_1 33 105 IPR000504 GO:0003723(InterPro)
Sed11g1386 644 SMART rrm1_1 210 283 IPR000504 GO:0003723(InterPro)
Sed11g1386 644 SMART rrm1_1 314 386 IPR000504 GO:0003723(InterPro)
Sed11g1386 644 SMART rrm1_1 120 192 IPR000504 GO:0003723(InterPro)
Sed11g1386 644 Coils Coil 388 408 - -
Sed11g1386 644 Gene3D - 294 402 IPR012677 -
Sed11g1386 644 Gene3D - 194 293 IPR012677 -
Sed11g1386 644 SUPERFAMILY RNA-binding domain, RBD 32 198 IPR035979 GO:0003676(InterPro)
Sed11g1386 644 PRINTS Paraneoplastic encephalomyelitis antigen family signature 209 224 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Sed11g1386 644 PRINTS Paraneoplastic encephalomyelitis antigen family signature 300 317 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Sed11g1386 644 PRINTS Paraneoplastic encephalomyelitis antigen family signature 333 345 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Sed11g1386 644 PRINTS Paraneoplastic encephalomyelitis antigen family signature 318 333 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Sed11g1386 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723(InterPro)
Sed11g1386 644 FunFam Polyadenylate-binding protein 114 200 - -
Sed11g1386 644 CDD RRM2_I_PABPs 117 193 IPR045305 -
Sed11g1386 644 SMART poly_2 564 627 IPR002004 GO:0003723(InterPro)
Sed11g1386 644 CDD RRM4_I_PABPs 312 390 - -
Sed11g1386 644 FunFam Polyadenylate-binding protein 9 113 - -
Sed11g1386 644 Pfam RNA recognition motif 121 189 IPR000504 GO:0003723(InterPro)
Sed11g1386 644 Pfam RNA recognition motif 211 275 IPR000504 GO:0003723(InterPro)
Sed11g1386 644 Pfam RNA recognition motif 315 383 IPR000504 GO:0003723(InterPro)
Sed11g1386 644 Pfam RNA recognition motif 34 103 IPR000504 GO:0003723(InterPro)
Sed11g1386 644 SMART rrm2_1 210 282 IPR003954 GO:0003676(InterPro)
Sed11g1386 644 SMART rrm2_1 120 192 IPR003954 GO:0003676(InterPro)
Sed11g1386 644 SMART rrm2_1 314 386 IPR003954 GO:0003676(InterPro)
Sed11g1386 644 SMART rrm2_1 33 105 IPR003954 GO:0003676(InterPro)
Sed11g1386 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723(InterPro)
Sed11g1386 644 PANTHER RNA BINDING PROTEIN 25 212 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Sed11g1386 644 SUPERFAMILY RNA-binding domain, RBD 310 409 IPR035979 GO:0003676(InterPro)
Sed11g1386 644 SUPERFAMILY RNA-binding domain, RBD 209 294 IPR035979 GO:0003676(InterPro)
Sed11g1386 644 Gene3D - 120 193 IPR012677 -
Sed11g1386 644 FunFam Polyadenylate-binding protein 548 630 - -
Sed11g1386 644 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723(InterPro)
Sed11g1386 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 191 IPR000504 GO:0003723(InterPro)
Sed11g1386 644 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723(InterPro)
Sed11g1386 644 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 32 625 IPR006515 GO:0003723(InterPro)
Sed11g1386 644 FunFam Polyadenylate-binding protein 201 295 - -
Sed11g1386 644 CDD RRM3_I_PABPs 208 288 - -
Sed11g1386 644 Gene3D - 30 119 IPR012677 -
Sed11g1386 644 FunFam Polyadenylate-binding protein 296 401 - -
Sed11g1386 644 SUPERFAMILY PABC (PABP) domain 464 632 IPR036053 GO:0003723(InterPro)
Sed11g1386 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723(InterPro)
Sed11g1386 644 MobiDBLite consensus disorder prediction 625 644 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0517 Sed-Chr3:3130994 Sed11g1386 Sed-Chr11:29852935 3.00E-299 dispersed
Sed05g2592 Sed-Chr5:37650850 Sed11g1386 Sed-Chr11:29852935 2.60E-186 dispersed
Sed10g1289 Sed-Chr10:28453050 Sed11g1386 Sed-Chr11:29852935 1.60E-27 dispersed
Sed10g2019 Sed-Chr10:36768905 Sed11g1386 Sed-Chr11:29852935 2.10E-183 dispersed
Sed11g1386 Sed-Chr11:29852935 Sed13g0482 Sed-Chr13:3303081 6.60E-190 dispersed
Sed11g1386 Sed-Chr11:29852935 Sed03g0515 Sed-Chr3:3124180 1.50E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1386 K13126 - csv:101219081 1043.88