Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1403 | ATGATGAACAGCATGGGAATCTTTGAAGATATTGGCTTTTGCCGAAATCTCGATTACTTTTCGATCCCGTCAGGGGAACAAGAGACAGCTCAGGAGCATGAAGCTGAGGTTAATCTGGAGGAGGATTATAGCGATGAAGAGCTGGATGTTGATGAGCTCGAGAGAAGGATGTGGCGAGACCGAATGCTTTTGAGGCGACTCAAAGAACAAGGAAAAGAAAAGGAAGGGGCTGATAATTCAAAGCAGCGTCAATCCCAGGAGCAGGCTCGAAGGAAGAAGATGTCTCGGGCTCAAGACGGCATCTTGAAATATATGTTGAAAATGATGGAGGTCTGTAAAGCTCAAGGCTTCGTTTATGGGATCATTCCCGAGAAAGGAAAGCCTGTAAGTGGAGCTTCTGATAATCTTCGTGCCTGGTGGAAAGAAAAAGTCAGATTCGATAGAAATGGCCCCGCGGCCATTGCCAAATATCAGGCTGACCACGCAATTCCCGGGATGAACGATGACTGCAATACAGTGACATCCACTCCTCACACTTTACAAGAGCTCCAAGATACGACTCTCGGATCACTCTTATCGGCTTTGATGCAACACTGTGATCCACCCCAGCGACGTTTTCCACTGGAGAAGGGAGTTTCGCCGCCGTGGTGGCCAACTGGAAATGAGGTATGGTGGCCCGAGTTGGGGCTACCCAAGGACCAGGGTCCTCCCCCTTACAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTCAGTGTTCTCACTGCAGTGATTAAGCACATGTCGCCCGATATTGCCAAGATTCGCAAGCTTGTTCGTCAGTCTAAATGTTTGCAGGATAAGATGACCGCAAAGGAGAGCGCTACATGGCTGGCCATTGTAAACCAGGAAGAATCCTTGGCCAGGAAATTATATCCTGATAAATGCCCGCCTATGTCGATCTGTGGGAGCGGATCTATTTTAATCAGTGACGTTAGTGATTACGATGTTGAAGGTGTAGAAGATGAACCTAATGTCGAAACAGACGAAAGCAAGCCTCATGATCTTAACTTCTTTAATATGGCAGCTCCTGGACATAGAGAGAGGCTTATGATCCCACCTGTGGGACCTCAAATTAAGGAAGAATTTATGGAGAACAATTCTGACTTCATTCAAAAGAGGAAGCAGATGACTGATGAGTCGAATACAATGATGACTCCAAAGATATATACTTGCGAGTATTCTCAGTGCCCGTACAACAGTTCGCGCCTCGGGTTTCTTGACAGGACTTCGAGAAACAACCACCAATTGAATTGCCCATTTAGGAGTGATTCTTCCCACATATTTGGCATGCCAAGCTTTCAAATTAGCGATGATAAATCGTCCCCGGTTCCTCCATCCTTCAACCATTCTAAGCCACCTAATCGATCGATGAACCCGACTCCACCCTTCAGGGTATCAGGACTCGGACTTCCCGAAGATGGCCAGAAAACGATCACTGACCTCCTGAGTTTCTACGATTCTAACCACCAACAGGACAGAAACTTGAATCCCGGGAATGTCGAAGCTAGAGACGACCACAACCAACAGCTGCCAAAATTCCAACTCCAAGTTGATGATAACTTGTATTGCCAAGGAGCAATGGTGGGAAATAATAGCATGCCGCCAATGCAGCACCCTGATTTCTCTTCCACAAAAGTCCCATTCGACGAGTTCAAAGCGTTCGATTCTCCCTTCGCCATGTATCCCAACGATAACATTCCCGATTTTAGATTTGGTTCGCCATTTAACTTGGCATCGATCGACTATCAAGTCGACCCACCATTGCCGAAGCAAGACACACAGTTATGGTACCTTTGA | 1839 | 46.82 | MMNSMGIFEDIGFCRNLDYFSIPSGEQETAQEHEAEVNLEEDYSDEELDVDELERRMWRDRMLLRRLKEQGKEKEGADNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGMNDDCNTVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEVWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEESLARKLYPDKCPPMSICGSGSILISDVSDYDVEGVEDEPNVETDESKPHDLNFFNMAAPGHRERLMIPPVGPQIKEEFMENNSDFIQKRKQMTDESNTMMTPKIYTCEYSQCPYNSSRLGFLDRTSRNNHQLNCPFRSDSSHIFGMPSFQISDDKSSPVPPSFNHSKPPNRSMNPTPPFRVSGLGLPEDGQKTITDLLSFYDSNHQQDRNLNPGNVEARDDHNQQLPKFQLQVDDNLYCQGAMVGNNSMPPMQHPDFSSTKVPFDEFKAFDSPFAMYPNDNIPDFRFGSPFNLASIDYQVDPPLPKQDTQLWYL | 612 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 29994556 | 29998448 | - | Sed0011376.1 | Sed11g1403 | 730049 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1403 | 612 | FunFam | Ethylene insensitive 3-like 1 | 171 | 308 | - | - | |
Sed11g1403 | 612 | Coils | Coil | 36 | 70 | - | - | |
Sed11g1403 | 612 | MobiDBLite | consensus disorder prediction | 69 | 94 | - | - | |
Sed11g1403 | 612 | MobiDBLite | consensus disorder prediction | 449 | 474 | - | - | |
Sed11g1403 | 612 | Gene3D | - | 175 | 308 | IPR023278 | GO:0003700(InterPro)|GO:0005634(InterPro) | |
Sed11g1403 | 612 | MobiDBLite | consensus disorder prediction | 449 | 468 | - | - | |
Sed11g1403 | 612 | Gene3D | - | 83 | 163 | IPR023278 | GO:0003700(InterPro)|GO:0005634(InterPro) | |
Sed11g1403 | 612 | SUPERFAMILY | DNA-binding domain of EIN3-like | 177 | 301 | IPR023278 | GO:0003700(InterPro)|GO:0005634(InterPro) | |
Sed11g1403 | 612 | FunFam | Ethylene insensitive 3-like 1 | 83 | 161 | - | - | |
Sed11g1403 | 612 | PANTHER | ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN | 7 | 601 | IPR006957 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro) | |
Sed11g1403 | 612 | Pfam | Ethylene insensitive 3, DNA-binding domain | 51 | 298 | IPR047091 | GO:0003700(InterPro) | |
Sed11g1403 | 612 | MobiDBLite | consensus disorder prediction | 26 | 46 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g1748 | Sed-Chr7:17462282 | Sed11g1403 | Sed-Chr11:29994556 | 4.40E-81 | dispersed | |
Sed08g1058 | Sed-Chr8:14153488 | Sed11g1403 | Sed-Chr11:29994556 | 6.30E-97 | dispersed | |
Sed11g1403 | Sed-Chr11:29994556 | Sed12g1593 | Sed-Chr12:26087537 | 2.90E-94 | dispersed | |
Sed12g1623 | Sed-Chr12:27273232 | Sed11g1403 | Sed-Chr11:29994556 | 9.90E-199 | transposed | |
Sed11g1403 | Sed-Chr11:29994556 | Sed03g0538 | Sed-Chr3:3311908 | 2.1e-310 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39988 | PF04873 | EIN3 | 2.90E-131 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1403 | K14514 | - | csv:101214396 | 1088.94 |