Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1403 ATGATGAACAGCATGGGAATCTTTGAAGATATTGGCTTTTGCCGAAATCTCGATTACTTTTCGATCCCGTCAGGGGAACAAGAGACAGCTCAGGAGCATGAAGCTGAGGTTAATCTGGAGGAGGATTATAGCGATGAAGAGCTGGATGTTGATGAGCTCGAGAGAAGGATGTGGCGAGACCGAATGCTTTTGAGGCGACTCAAAGAACAAGGAAAAGAAAAGGAAGGGGCTGATAATTCAAAGCAGCGTCAATCCCAGGAGCAGGCTCGAAGGAAGAAGATGTCTCGGGCTCAAGACGGCATCTTGAAATATATGTTGAAAATGATGGAGGTCTGTAAAGCTCAAGGCTTCGTTTATGGGATCATTCCCGAGAAAGGAAAGCCTGTAAGTGGAGCTTCTGATAATCTTCGTGCCTGGTGGAAAGAAAAAGTCAGATTCGATAGAAATGGCCCCGCGGCCATTGCCAAATATCAGGCTGACCACGCAATTCCCGGGATGAACGATGACTGCAATACAGTGACATCCACTCCTCACACTTTACAAGAGCTCCAAGATACGACTCTCGGATCACTCTTATCGGCTTTGATGCAACACTGTGATCCACCCCAGCGACGTTTTCCACTGGAGAAGGGAGTTTCGCCGCCGTGGTGGCCAACTGGAAATGAGGTATGGTGGCCCGAGTTGGGGCTACCCAAGGACCAGGGTCCTCCCCCTTACAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTCAGTGTTCTCACTGCAGTGATTAAGCACATGTCGCCCGATATTGCCAAGATTCGCAAGCTTGTTCGTCAGTCTAAATGTTTGCAGGATAAGATGACCGCAAAGGAGAGCGCTACATGGCTGGCCATTGTAAACCAGGAAGAATCCTTGGCCAGGAAATTATATCCTGATAAATGCCCGCCTATGTCGATCTGTGGGAGCGGATCTATTTTAATCAGTGACGTTAGTGATTACGATGTTGAAGGTGTAGAAGATGAACCTAATGTCGAAACAGACGAAAGCAAGCCTCATGATCTTAACTTCTTTAATATGGCAGCTCCTGGACATAGAGAGAGGCTTATGATCCCACCTGTGGGACCTCAAATTAAGGAAGAATTTATGGAGAACAATTCTGACTTCATTCAAAAGAGGAAGCAGATGACTGATGAGTCGAATACAATGATGACTCCAAAGATATATACTTGCGAGTATTCTCAGTGCCCGTACAACAGTTCGCGCCTCGGGTTTCTTGACAGGACTTCGAGAAACAACCACCAATTGAATTGCCCATTTAGGAGTGATTCTTCCCACATATTTGGCATGCCAAGCTTTCAAATTAGCGATGATAAATCGTCCCCGGTTCCTCCATCCTTCAACCATTCTAAGCCACCTAATCGATCGATGAACCCGACTCCACCCTTCAGGGTATCAGGACTCGGACTTCCCGAAGATGGCCAGAAAACGATCACTGACCTCCTGAGTTTCTACGATTCTAACCACCAACAGGACAGAAACTTGAATCCCGGGAATGTCGAAGCTAGAGACGACCACAACCAACAGCTGCCAAAATTCCAACTCCAAGTTGATGATAACTTGTATTGCCAAGGAGCAATGGTGGGAAATAATAGCATGCCGCCAATGCAGCACCCTGATTTCTCTTCCACAAAAGTCCCATTCGACGAGTTCAAAGCGTTCGATTCTCCCTTCGCCATGTATCCCAACGATAACATTCCCGATTTTAGATTTGGTTCGCCATTTAACTTGGCATCGATCGACTATCAAGTCGACCCACCATTGCCGAAGCAAGACACACAGTTATGGTACCTTTGA 1839 46.82 MMNSMGIFEDIGFCRNLDYFSIPSGEQETAQEHEAEVNLEEDYSDEELDVDELERRMWRDRMLLRRLKEQGKEKEGADNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGMNDDCNTVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEVWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEESLARKLYPDKCPPMSICGSGSILISDVSDYDVEGVEDEPNVETDESKPHDLNFFNMAAPGHRERLMIPPVGPQIKEEFMENNSDFIQKRKQMTDESNTMMTPKIYTCEYSQCPYNSSRLGFLDRTSRNNHQLNCPFRSDSSHIFGMPSFQISDDKSSPVPPSFNHSKPPNRSMNPTPPFRVSGLGLPEDGQKTITDLLSFYDSNHQQDRNLNPGNVEARDDHNQQLPKFQLQVDDNLYCQGAMVGNNSMPPMQHPDFSSTKVPFDEFKAFDSPFAMYPNDNIPDFRFGSPFNLASIDYQVDPPLPKQDTQLWYL 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29994556 29998448 - Sed0011376.1 Sed11g1403 730049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1403 612 FunFam Ethylene insensitive 3-like 1 171 308 - -
Sed11g1403 612 Coils Coil 36 70 - -
Sed11g1403 612 MobiDBLite consensus disorder prediction 69 94 - -
Sed11g1403 612 MobiDBLite consensus disorder prediction 449 474 - -
Sed11g1403 612 Gene3D - 175 308 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed11g1403 612 MobiDBLite consensus disorder prediction 449 468 - -
Sed11g1403 612 Gene3D - 83 163 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed11g1403 612 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed11g1403 612 FunFam Ethylene insensitive 3-like 1 83 161 - -
Sed11g1403 612 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 7 601 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Sed11g1403 612 Pfam Ethylene insensitive 3, DNA-binding domain 51 298 IPR047091 GO:0003700(InterPro)
Sed11g1403 612 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1748 Sed-Chr7:17462282 Sed11g1403 Sed-Chr11:29994556 4.40E-81 dispersed
Sed08g1058 Sed-Chr8:14153488 Sed11g1403 Sed-Chr11:29994556 6.30E-97 dispersed
Sed11g1403 Sed-Chr11:29994556 Sed12g1593 Sed-Chr12:26087537 2.90E-94 dispersed
Sed12g1623 Sed-Chr12:27273232 Sed11g1403 Sed-Chr11:29994556 9.90E-199 transposed
Sed11g1403 Sed-Chr11:29994556 Sed03g0538 Sed-Chr3:3311908 2.1e-310 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39988 PF04873 EIN3 2.90E-131 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1403 K14514 - csv:101214396 1088.94