Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1410 ATGGGGGTTCAAACCATGGGGTCTCAGGCTGAAGGGGATCCAAATGGAAAACAATCACAATTCCAGCCATTGGTTCGGCAAAACTCACTATATAGTCTCACGCTCAATGAGGTCCAAAATCATTTGGGTGATCTAGGGAAGCCATTAATGAGCATGAACCTTGATGAGCTTCTTAAGAATGTGTGGATTGCTGAGGCCAATGGTAAGGAAAATGGGGAAAATACCGTCTTGGCGAATATAACATCCCAACAACGTCAGGCTAGTCTTACATTGAATGGTGCTCTGAGTAAAAAGACAGTTGATGAAGTGTGGAAAGACATTCAACAAAGCAAAAACATCGAGGAGAAGAAGTCATGTGAACGACATCCTACCTTGGGAGAGATGACATTAGAAGATTTTCTTGTGAAAGCAGGGGTGGTGCCCGAGACGTCGTCAAATAAGAAAGGTGCAGGTTCTGTTGTTGAAATTGATGCAAATATCACACCCCAGTTTCCCCAACAGGGGCTGTGGATGCAGTACCCCCAAGCTCAATATCAGCCTCACCAAGCAGCAATGATGGGGGCTTACATGTCGGGTCAGCCTATTCCGCATACACTGCATGTCGGGGCTGGCGCTGTGATGGATGTTTCATATGTAGACAACCAGTTGGCATTGTCAGCACCATTGATGGGAACTTTATCAGACACACAAACATCTGGAAGGAAAAGGGGTGCGCCTGAAGACATGATTGAGAAAACTGTCGAGCGTCGACAGAAGAGGATGATAAAGAATCGGGAATCTGCTGCTCGTTCACGAGCGAGGAAGCAGGCTTATACCACTGAACTGGAGAACAAAGTTTCACGTTTGGAAGAGGAAAATGAAAAGCTCAGAAAACGGAAGGTTTGCCTCATATTGAATGAAGCCCAAAAGAGAGCTGCACAAGTTGCTACCCTTGGCTCCCTTGCCCGAGCCGAAGTATCAGCTTCGAAGAACGTCGTCAGCGCCATTGTAACTTGCACATCAGCTCTCTCTTTCTCCTTTCATACTCATAAAGTTCATGGTTGGGTGTTGTTGATAGTTTGTTTCTAA 1068 45.88 MGVQTMGSQAEGDPNGKQSQFQPLVRQNSLYSLTLNEVQNHLGDLGKPLMSMNLDELLKNVWIAEANGKENGENTVLANITSQQRQASLTLNGALSKKTVDEVWKDIQQSKNIEEKKSCERHPTLGEMTLEDFLVKAGVVPETSSNKKGAGSVVEIDANITPQFPQQGLWMQYPQAQYQPHQAAMMGAYMSGQPIPHTLHVGAGAVMDVSYVDNQLALSAPLMGTLSDTQTSGRKRGAPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTTELENKVSRLEEENEKLRKRKVCLILNEAQKRAAQVATLGSLARAEVSASKNVVSAIVTCTSALSFSFHTHKVHGWVLLIVCF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30035602 30044536 - Sed0014567.4 Sed11g1410 730056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1410 355 SUPERFAMILY Leucine zipper domain 249 293 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1410 355 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 26 303 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Sed11g1410 355 Coils Coil 265 299 - -
Sed11g1410 355 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 252 267 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1410 355 SMART brlzneu 245 310 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1410 355 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 247 292 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1410 355 MobiDBLite consensus disorder prediction 1 23 - -
Sed11g1410 355 CDD bZIP_plant_BZIP46 249 296 - -
Sed11g1410 355 Gene3D - 247 296 - -
Sed11g1410 355 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 247 304 - -
Sed11g1410 355 Pfam bZIP transcription factor 249 292 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1408 Sed-Chr11:30035602 Sed11g1410 Sed-Chr11:30035602 5.40E-194 dispersed
Sed11g1410 Sed-Chr11:30035602 Sed11g1412 Sed-Chr11:30035602 1.10E-159 dispersed
Sed11g1409 Sed-Chr11:30035602 Sed11g1410 Sed-Chr11:30035602 5.40E-194 tandem
Sed11g1410 Sed-Chr11:30035602 Sed11g1411 Sed-Chr11:30035602 1.10E-159 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39992 PF00170 bZIP_1 4.00E-13 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1410 K14432 - csv:101213915 469.159