Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1410 | ATGGGGGTTCAAACCATGGGGTCTCAGGCTGAAGGGGATCCAAATGGAAAACAATCACAATTCCAGCCATTGGTTCGGCAAAACTCACTATATAGTCTCACGCTCAATGAGGTCCAAAATCATTTGGGTGATCTAGGGAAGCCATTAATGAGCATGAACCTTGATGAGCTTCTTAAGAATGTGTGGATTGCTGAGGCCAATGGTAAGGAAAATGGGGAAAATACCGTCTTGGCGAATATAACATCCCAACAACGTCAGGCTAGTCTTACATTGAATGGTGCTCTGAGTAAAAAGACAGTTGATGAAGTGTGGAAAGACATTCAACAAAGCAAAAACATCGAGGAGAAGAAGTCATGTGAACGACATCCTACCTTGGGAGAGATGACATTAGAAGATTTTCTTGTGAAAGCAGGGGTGGTGCCCGAGACGTCGTCAAATAAGAAAGGTGCAGGTTCTGTTGTTGAAATTGATGCAAATATCACACCCCAGTTTCCCCAACAGGGGCTGTGGATGCAGTACCCCCAAGCTCAATATCAGCCTCACCAAGCAGCAATGATGGGGGCTTACATGTCGGGTCAGCCTATTCCGCATACACTGCATGTCGGGGCTGGCGCTGTGATGGATGTTTCATATGTAGACAACCAGTTGGCATTGTCAGCACCATTGATGGGAACTTTATCAGACACACAAACATCTGGAAGGAAAAGGGGTGCGCCTGAAGACATGATTGAGAAAACTGTCGAGCGTCGACAGAAGAGGATGATAAAGAATCGGGAATCTGCTGCTCGTTCACGAGCGAGGAAGCAGGCTTATACCACTGAACTGGAGAACAAAGTTTCACGTTTGGAAGAGGAAAATGAAAAGCTCAGAAAACGGAAGGTTTGCCTCATATTGAATGAAGCCCAAAAGAGAGCTGCACAAGTTGCTACCCTTGGCTCCCTTGCCCGAGCCGAAGTATCAGCTTCGAAGAACGTCGTCAGCGCCATTGTAACTTGCACATCAGCTCTCTCTTTCTCCTTTCATACTCATAAAGTTCATGGTTGGGTGTTGTTGATAGTTTGTTTCTAA | 1068 | 45.88 | MGVQTMGSQAEGDPNGKQSQFQPLVRQNSLYSLTLNEVQNHLGDLGKPLMSMNLDELLKNVWIAEANGKENGENTVLANITSQQRQASLTLNGALSKKTVDEVWKDIQQSKNIEEKKSCERHPTLGEMTLEDFLVKAGVVPETSSNKKGAGSVVEIDANITPQFPQQGLWMQYPQAQYQPHQAAMMGAYMSGQPIPHTLHVGAGAVMDVSYVDNQLALSAPLMGTLSDTQTSGRKRGAPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTTELENKVSRLEEENEKLRKRKVCLILNEAQKRAAQVATLGSLARAEVSASKNVVSAIVTCTSALSFSFHTHKVHGWVLLIVCF | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30035602 | 30044536 | - | Sed0014567.4 | Sed11g1410 | 730056 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1410 | 355 | SUPERFAMILY | Leucine zipper domain | 249 | 293 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1410 | 355 | PANTHER | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | 26 | 303 | IPR043452 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro) | |
Sed11g1410 | 355 | Coils | Coil | 265 | 299 | - | - | |
Sed11g1410 | 355 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 252 | 267 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1410 | 355 | SMART | brlzneu | 245 | 310 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1410 | 355 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 247 | 292 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1410 | 355 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Sed11g1410 | 355 | CDD | bZIP_plant_BZIP46 | 249 | 296 | - | - | |
Sed11g1410 | 355 | Gene3D | - | 247 | 296 | - | - | |
Sed11g1410 | 355 | FunFam | ABSCISIC ACID-INSENSITIVE 5-like protein 2 | 247 | 304 | - | - | |
Sed11g1410 | 355 | Pfam | bZIP transcription factor | 249 | 292 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g1408 | Sed-Chr11:30035602 | Sed11g1410 | Sed-Chr11:30035602 | 5.40E-194 | dispersed | |
Sed11g1410 | Sed-Chr11:30035602 | Sed11g1412 | Sed-Chr11:30035602 | 1.10E-159 | dispersed | |
Sed11g1409 | Sed-Chr11:30035602 | Sed11g1410 | Sed-Chr11:30035602 | 5.40E-194 | tandem | |
Sed11g1410 | Sed-Chr11:30035602 | Sed11g1411 | Sed-Chr11:30035602 | 1.10E-159 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39992 | PF00170 | bZIP_1 | 4.00E-13 | CL0018 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1410 | K14432 | - | csv:101213915 | 469.159 |