Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1418 ATGGATTCTTCAACAACCCCAAACCAGGACTCGGCGAATATCGAACCCGCGGTGCGATCGCAGTCCTCGATTCCGGAAGCGGGCTCGAATGGTTCTGGATCGAAGCCTGTACTCCAAGGCTCGGTTCTGAACAAGATCCGCAAGAAACCTAGGAGGTTGGTTTACATTGGCGATCCGGAAATGACGAACCGGGATTCTGGAATTGCTGGCAATTCGATTCGTACTGGTAAATATACAATTCTAAATTTTCTACCTAGGAATCTGTTTGAACAGTTTCATAGGATCGTCTATTTGTATTTCCTTGTTGTTTCTGTTCTGAATCAACTCCCTCAGCTTTCCGTTTTTGGTCGGGGAGTCTCCATTTTGCCTCTAGTTTCTGTGCTTTTAGTTACGGCGGTTAAAGATGCGTATGAGGATTGGAGATGTCATTGTTGTGATGAAATTGAGAACAATAGGTTAGGTTTAGTTTTGGTGAATGGTGAGTTTCAGTTGAAGAAATGGAAGGATATTAGAGTTGGTCAGATAATTAAAATTTGTGAAAATGAGGCTATTCCCTGCGATATGGTGCTTCTCTCGACGAGTGATTCCGTAGGGATTGCGTACGTGCAGACTCTGAATTTGGATGGGGAACCAACTTTGAAAACCAATTATACAAAACAAGAAACACTGTCGAAAATGCGTGAAAAGGAAAAGATTGATGGGTTGATTAAATGTGAATATCCAAATAGGAATATCTATCAATTTGATGATGGTGAGTTGGAGATTGATGGCGAGCGTCTATCCCTTTGGCAATCAAACATGGTTCTTCGTGGCTGTGAGCTCAAGAATACCAGCTGGGCTGTTGGTGTTGCTGTATATGCCGGCGGTGAGACTAAAGTTATGCTTAACAGTTCCAATGCTCCATCGAAAAGAAGCCGTCTTGAGACCAGGAAGGACAGAGAGATTATCATACTCTCTTTGTTTCTTATTGCTTTGTGTACAATTATTTGTGTTTGTGCAGCTGTTTGGTTCATCAGAAAGGGGGAATATTTGGACGTTTTACCTTATTTCAGAAAGAAGGATTTCTCAAAAGACCCACCTGAAACTTATAAATACTATGGCTGGAGATTGGATGCATTTTTTGTGTTCCTCATGTCAGTCATTTTGTTTCAGAGCATGATCCCGATTTCATTGTATATTTCAATGGAGATTGCTCGGATCGGCCAGGTTTATTTCGTGATTCAAGACACCCAAATGTATGATGAAACATCAAACTCAAGATTTCAGTATCGGGCTTTGAACATAAATGAGGATCTAGGACAAGTAAGACATATGTTTCTGGACAAAACTGGTACGCTTACTGAGAATAAGATGAAATTTCGATGCGCAAGCATTTGGGGAATTGATTATGGAGGTGAAAGAACCAATCCCGCAGACAAGCAAATTGGTTCCCCTATTCAGGTTTTGAGACCAACATTGGCCATCAAAACCAATTCTGAACTTGTGCGGTTGTTGAAAAGTGGAAAGCACACCAAGGAAAGAAGATATATTCATGATTTTTTCCTCACATTAGCCGCTTGCAATACCATTTGGGAGTCTCCAGATGAACAGGCATTGGCTTATGCTGCTACAACATATGGTTTTACACTAATCGAACGAACGTCTGACCATATAGTTATTGACATACATGGTGAAAAGCAAAGGTATAGTATTATGGGAATGCATGAGTTTGATAGTGAGAGGAAGCGGATGTCGGTGATCCTGGGTTTCCCTGATATGACCTTCAAACTATTTGTAAAAGGTGCTGATACCTCCATGTTCAAGGTGATGGATGAAACTCTGAACATGGATAATATTCAAGCAACTAAAGCTCATCTTGCTTCATACTCCTCAAAAGGTCTCAGGACACTAGTTATTGGGATGAAAGAACTTGACCCTTATGACTTCGAGAAATGGAACTTGATGTATGAGGAAGCAAATTCTGCTGTAAGTGGTCGGGTTTCTTTGCTTCGCAAGGTTGCCAACAGCATAGAAAACAATCTGTGCGTATTGGGTGCCGTAGGCATCAAAGATAAGTTGCAAAAAGGTGTGCCAGAAGCCATGGAATCTTTGAGAACGACAGGAATTAAAGTATGGGTTTTGACTGGAGATAAGCAAGAAACTGTCATATCAATTGGTTACTCCTCGAGGCTCTTAACAAACAAGATGGTCAAACTCATGATTAACAGCGACTCAGCCGAATCATGCAGAAGGAGTTTAGAAAATGCAATAATCATGTTGAACAAGCATGCTAGTGTGTTGGGGGTTACACTGGACAGTGGAAAAGCTATAAGGCCTTTGGTTGCGTTGATCATTGATGGTACCAGCCTCGTATATATTCTTGAAACTGAACTCGAAGAACAGTTTTTCGAATTAGCTTCTATCTGTTCAGTTGTCTTATGTTCTCGGGTTGCCCCATTTCAAAAATCTGGAATCGTCGCTCTTGTTAAGAGAAAGACTTCTGACGTGACACTTGCCTTCGGTGATGGTGCGAATGATGTGGGAATGATCCAAAAGTCAGATGTAGGCATTGCTCTCAGTGGTCCAGAGGGTCAACAAGCTGTCATGGCATCAGATTTTGCCATAGGGCAATTTAGATTCTTGGTTCCTCTTCTATTGGTCCATGGACATTGGAATTACCAACGGATGGGCTACATGATTCTATCCAACTTTTACAGAAATGCAGTATTTGTGCTTGTATTATTTTGGTATGTTCTTTTTACTGGTTTCTCGTTGACGACCGCCATCAACCAATGGAGCAATATGCTGTATACTATAATCTATACTTGTTTGCCCACAATTGTTGTTGGAATTCTTGACAAGGACTTGGGAAGAAGGATTCTTCTTAGCTACCCTCAGCTCTATGGGGCTGGCCACAGACAGGAGAGTTACAACTGTAGATTGTTTTGGTTAACCATGATTGATGCCGTGTGGCAAAGTATTGCTATTTTCTTCATCCCCCTCCTTGCATACTGGGGTACCACCATTGACGATCCGAGCCTCGGTGATCTCTGGCTACTTGCTTTAGTCATCGTTGTCAACTTGCACTTGGCGATGGACGTCGTTCGATGGCATTCCATTACCCATGTTGTGATTTGGGGATCCACTCTTGCAACTGTCGTTTGTGTCATATCCTTGATTCGATAG 3165 41.86 MDSSTTPNQDSANIEPAVRSQSSIPEAGSNGSGSKPVLQGSVLNKIRKKPRRLVYIGDPEMTNRDSGIAGNSIRTGKYTILNFLPRNLFEQFHRIVYLYFLVVSVLNQLPQLSVFGRGVSILPLVSVLLVTAVKDAYEDWRCHCCDEIENNRLGLVLVNGEFQLKKWKDIRVGQIIKICENEAIPCDMVLLSTSDSVGIAYVQTLNLDGEPTLKTNYTKQETLSKMREKEKIDGLIKCEYPNRNIYQFDDGELEIDGERLSLWQSNMVLRGCELKNTSWAVGVAVYAGGETKVMLNSSNAPSKRSRLETRKDREIIILSLFLIALCTIICVCAAVWFIRKGEYLDVLPYFRKKDFSKDPPETYKYYGWRLDAFFVFLMSVILFQSMIPISLYISMEIARIGQVYFVIQDTQMYDETSNSRFQYRALNINEDLGQVRHMFLDKTGTLTENKMKFRCASIWGIDYGGERTNPADKQIGSPIQVLRPTLAIKTNSELVRLLKSGKHTKERRYIHDFFLTLAACNTIWESPDEQALAYAATTYGFTLIERTSDHIVIDIHGEKQRYSIMGMHEFDSERKRMSVILGFPDMTFKLFVKGADTSMFKVMDETLNMDNIQATKAHLASYSSKGLRTLVIGMKELDPYDFEKWNLMYEEANSAVSGRVSLLRKVANSIENNLCVLGAVGIKDKLQKGVPEAMESLRTTGIKVWVLTGDKQETVISIGYSSRLLTNKMVKLMINSDSAESCRRSLENAIIMLNKHASVLGVTLDSGKAIRPLVALIIDGTSLVYILETELEEQFFELASICSVVLCSRVAPFQKSGIVALVKRKTSDVTLAFGDGANDVGMIQKSDVGIALSGPEGQQAVMASDFAIGQFRFLVPLLLVHGHWNYQRMGYMILSNFYRNAVFVLVLFWYVLFTGFSLTTAINQWSNMLYTIIYTCLPTIVVGILDKDLGRRILLSYPQLYGAGHRQESYNCRLFWLTMIDAVWQSIAIFFIPLLAYWGTTIDDPSLGDLWLLALVIVVNLHLAMDVVRWHSITHVVIWGSTLATVVCVISLIR 1054
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30071204 30076923 + Sed0012164.1 Sed11g1418 730064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1418 1054 MobiDBLite consensus disorder prediction 1 38 - -
Sed11g1418 1054 NCBIfam HAD-IC family P-type ATPase 802 917 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed11g1418 1054 NCBIfam phospholipid-translocating P-type ATPase 70 1050 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Sed11g1418 1054 Pfam Phospholipid-translocating P-type ATPase C-terminal 861 1050 IPR032630 -
Sed11g1418 1054 Pfam Phospholipid-translocating ATPase N-terminal 54 120 IPR032631 -
Sed11g1418 1054 Gene3D - 514 677 IPR023299 GO:0000166(InterPro)
Sed11g1418 1054 SUPERFAMILY Calcium ATPase, transmembrane domain M 71 1052 IPR023298 -
Sed11g1418 1054 FunFam Phospholipid-transporting ATPase 677 873 - -
Sed11g1418 1054 Pfam Cation transport ATPase (P-type) 522 601 - -
Sed11g1418 1054 SUPERFAMILY HAD-like 426 874 IPR036412 -
Sed11g1418 1054 SFLD Haloacid Dehalogenase 424 884 - -
Sed11g1418 1054 ProSitePatterns E1-E2 ATPases phosphorylation site. 441 447 IPR018303 -
Sed11g1418 1054 Gene3D - 148 296 - -
Sed11g1418 1054 PRINTS P-type cation-transporting ATPase superfamily signature 439 453 - -
Sed11g1418 1054 PRINTS P-type cation-transporting ATPase superfamily signature 833 852 - -
Sed11g1418 1054 Gene3D - 678 873 IPR023214 -
Sed11g1418 1054 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 48 1050 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Sed11g1418 1054 SUPERFAMILY Calcium ATPase, transduction domain A 153 294 IPR008250 -
Sed11g1418 1054 SFLD p-type atpase 424 884 IPR044492 -
Sed11g1418 1054 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 445 690 IPR023299 GO:0000166(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1418 Sed-Chr11:30071204 Sed11g1422 Sed-Chr11:30107393 0.00E+00 dispersed
Sed11g1418 Sed-Chr11:30071204 Sed11g1420 Sed-Chr11:30085629 0.00E+00 proximal
Sed11g1418 Sed-Chr11:30071204 Sed03g0546 Sed-Chr3:3374973 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1418 K14802 - csv:101212953 1520.75