Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1418 | ATGGATTCTTCAACAACCCCAAACCAGGACTCGGCGAATATCGAACCCGCGGTGCGATCGCAGTCCTCGATTCCGGAAGCGGGCTCGAATGGTTCTGGATCGAAGCCTGTACTCCAAGGCTCGGTTCTGAACAAGATCCGCAAGAAACCTAGGAGGTTGGTTTACATTGGCGATCCGGAAATGACGAACCGGGATTCTGGAATTGCTGGCAATTCGATTCGTACTGGTAAATATACAATTCTAAATTTTCTACCTAGGAATCTGTTTGAACAGTTTCATAGGATCGTCTATTTGTATTTCCTTGTTGTTTCTGTTCTGAATCAACTCCCTCAGCTTTCCGTTTTTGGTCGGGGAGTCTCCATTTTGCCTCTAGTTTCTGTGCTTTTAGTTACGGCGGTTAAAGATGCGTATGAGGATTGGAGATGTCATTGTTGTGATGAAATTGAGAACAATAGGTTAGGTTTAGTTTTGGTGAATGGTGAGTTTCAGTTGAAGAAATGGAAGGATATTAGAGTTGGTCAGATAATTAAAATTTGTGAAAATGAGGCTATTCCCTGCGATATGGTGCTTCTCTCGACGAGTGATTCCGTAGGGATTGCGTACGTGCAGACTCTGAATTTGGATGGGGAACCAACTTTGAAAACCAATTATACAAAACAAGAAACACTGTCGAAAATGCGTGAAAAGGAAAAGATTGATGGGTTGATTAAATGTGAATATCCAAATAGGAATATCTATCAATTTGATGATGGTGAGTTGGAGATTGATGGCGAGCGTCTATCCCTTTGGCAATCAAACATGGTTCTTCGTGGCTGTGAGCTCAAGAATACCAGCTGGGCTGTTGGTGTTGCTGTATATGCCGGCGGTGAGACTAAAGTTATGCTTAACAGTTCCAATGCTCCATCGAAAAGAAGCCGTCTTGAGACCAGGAAGGACAGAGAGATTATCATACTCTCTTTGTTTCTTATTGCTTTGTGTACAATTATTTGTGTTTGTGCAGCTGTTTGGTTCATCAGAAAGGGGGAATATTTGGACGTTTTACCTTATTTCAGAAAGAAGGATTTCTCAAAAGACCCACCTGAAACTTATAAATACTATGGCTGGAGATTGGATGCATTTTTTGTGTTCCTCATGTCAGTCATTTTGTTTCAGAGCATGATCCCGATTTCATTGTATATTTCAATGGAGATTGCTCGGATCGGCCAGGTTTATTTCGTGATTCAAGACACCCAAATGTATGATGAAACATCAAACTCAAGATTTCAGTATCGGGCTTTGAACATAAATGAGGATCTAGGACAAGTAAGACATATGTTTCTGGACAAAACTGGTACGCTTACTGAGAATAAGATGAAATTTCGATGCGCAAGCATTTGGGGAATTGATTATGGAGGTGAAAGAACCAATCCCGCAGACAAGCAAATTGGTTCCCCTATTCAGGTTTTGAGACCAACATTGGCCATCAAAACCAATTCTGAACTTGTGCGGTTGTTGAAAAGTGGAAAGCACACCAAGGAAAGAAGATATATTCATGATTTTTTCCTCACATTAGCCGCTTGCAATACCATTTGGGAGTCTCCAGATGAACAGGCATTGGCTTATGCTGCTACAACATATGGTTTTACACTAATCGAACGAACGTCTGACCATATAGTTATTGACATACATGGTGAAAAGCAAAGGTATAGTATTATGGGAATGCATGAGTTTGATAGTGAGAGGAAGCGGATGTCGGTGATCCTGGGTTTCCCTGATATGACCTTCAAACTATTTGTAAAAGGTGCTGATACCTCCATGTTCAAGGTGATGGATGAAACTCTGAACATGGATAATATTCAAGCAACTAAAGCTCATCTTGCTTCATACTCCTCAAAAGGTCTCAGGACACTAGTTATTGGGATGAAAGAACTTGACCCTTATGACTTCGAGAAATGGAACTTGATGTATGAGGAAGCAAATTCTGCTGTAAGTGGTCGGGTTTCTTTGCTTCGCAAGGTTGCCAACAGCATAGAAAACAATCTGTGCGTATTGGGTGCCGTAGGCATCAAAGATAAGTTGCAAAAAGGTGTGCCAGAAGCCATGGAATCTTTGAGAACGACAGGAATTAAAGTATGGGTTTTGACTGGAGATAAGCAAGAAACTGTCATATCAATTGGTTACTCCTCGAGGCTCTTAACAAACAAGATGGTCAAACTCATGATTAACAGCGACTCAGCCGAATCATGCAGAAGGAGTTTAGAAAATGCAATAATCATGTTGAACAAGCATGCTAGTGTGTTGGGGGTTACACTGGACAGTGGAAAAGCTATAAGGCCTTTGGTTGCGTTGATCATTGATGGTACCAGCCTCGTATATATTCTTGAAACTGAACTCGAAGAACAGTTTTTCGAATTAGCTTCTATCTGTTCAGTTGTCTTATGTTCTCGGGTTGCCCCATTTCAAAAATCTGGAATCGTCGCTCTTGTTAAGAGAAAGACTTCTGACGTGACACTTGCCTTCGGTGATGGTGCGAATGATGTGGGAATGATCCAAAAGTCAGATGTAGGCATTGCTCTCAGTGGTCCAGAGGGTCAACAAGCTGTCATGGCATCAGATTTTGCCATAGGGCAATTTAGATTCTTGGTTCCTCTTCTATTGGTCCATGGACATTGGAATTACCAACGGATGGGCTACATGATTCTATCCAACTTTTACAGAAATGCAGTATTTGTGCTTGTATTATTTTGGTATGTTCTTTTTACTGGTTTCTCGTTGACGACCGCCATCAACCAATGGAGCAATATGCTGTATACTATAATCTATACTTGTTTGCCCACAATTGTTGTTGGAATTCTTGACAAGGACTTGGGAAGAAGGATTCTTCTTAGCTACCCTCAGCTCTATGGGGCTGGCCACAGACAGGAGAGTTACAACTGTAGATTGTTTTGGTTAACCATGATTGATGCCGTGTGGCAAAGTATTGCTATTTTCTTCATCCCCCTCCTTGCATACTGGGGTACCACCATTGACGATCCGAGCCTCGGTGATCTCTGGCTACTTGCTTTAGTCATCGTTGTCAACTTGCACTTGGCGATGGACGTCGTTCGATGGCATTCCATTACCCATGTTGTGATTTGGGGATCCACTCTTGCAACTGTCGTTTGTGTCATATCCTTGATTCGATAG | 3165 | 41.86 | MDSSTTPNQDSANIEPAVRSQSSIPEAGSNGSGSKPVLQGSVLNKIRKKPRRLVYIGDPEMTNRDSGIAGNSIRTGKYTILNFLPRNLFEQFHRIVYLYFLVVSVLNQLPQLSVFGRGVSILPLVSVLLVTAVKDAYEDWRCHCCDEIENNRLGLVLVNGEFQLKKWKDIRVGQIIKICENEAIPCDMVLLSTSDSVGIAYVQTLNLDGEPTLKTNYTKQETLSKMREKEKIDGLIKCEYPNRNIYQFDDGELEIDGERLSLWQSNMVLRGCELKNTSWAVGVAVYAGGETKVMLNSSNAPSKRSRLETRKDREIIILSLFLIALCTIICVCAAVWFIRKGEYLDVLPYFRKKDFSKDPPETYKYYGWRLDAFFVFLMSVILFQSMIPISLYISMEIARIGQVYFVIQDTQMYDETSNSRFQYRALNINEDLGQVRHMFLDKTGTLTENKMKFRCASIWGIDYGGERTNPADKQIGSPIQVLRPTLAIKTNSELVRLLKSGKHTKERRYIHDFFLTLAACNTIWESPDEQALAYAATTYGFTLIERTSDHIVIDIHGEKQRYSIMGMHEFDSERKRMSVILGFPDMTFKLFVKGADTSMFKVMDETLNMDNIQATKAHLASYSSKGLRTLVIGMKELDPYDFEKWNLMYEEANSAVSGRVSLLRKVANSIENNLCVLGAVGIKDKLQKGVPEAMESLRTTGIKVWVLTGDKQETVISIGYSSRLLTNKMVKLMINSDSAESCRRSLENAIIMLNKHASVLGVTLDSGKAIRPLVALIIDGTSLVYILETELEEQFFELASICSVVLCSRVAPFQKSGIVALVKRKTSDVTLAFGDGANDVGMIQKSDVGIALSGPEGQQAVMASDFAIGQFRFLVPLLLVHGHWNYQRMGYMILSNFYRNAVFVLVLFWYVLFTGFSLTTAINQWSNMLYTIIYTCLPTIVVGILDKDLGRRILLSYPQLYGAGHRQESYNCRLFWLTMIDAVWQSIAIFFIPLLAYWGTTIDDPSLGDLWLLALVIVVNLHLAMDVVRWHSITHVVIWGSTLATVVCVISLIR | 1054 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30071204 | 30076923 | + | Sed0012164.1 | Sed11g1418 | 730064 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1418 | 1054 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Sed11g1418 | 1054 | NCBIfam | HAD-IC family P-type ATPase | 802 | 917 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed11g1418 | 1054 | NCBIfam | phospholipid-translocating P-type ATPase | 70 | 1050 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
Sed11g1418 | 1054 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 861 | 1050 | IPR032630 | - | |
Sed11g1418 | 1054 | Pfam | Phospholipid-translocating ATPase N-terminal | 54 | 120 | IPR032631 | - | |
Sed11g1418 | 1054 | Gene3D | - | 514 | 677 | IPR023299 | GO:0000166(InterPro) | |
Sed11g1418 | 1054 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 71 | 1052 | IPR023298 | - | |
Sed11g1418 | 1054 | FunFam | Phospholipid-transporting ATPase | 677 | 873 | - | - | |
Sed11g1418 | 1054 | Pfam | Cation transport ATPase (P-type) | 522 | 601 | - | - | |
Sed11g1418 | 1054 | SUPERFAMILY | HAD-like | 426 | 874 | IPR036412 | - | |
Sed11g1418 | 1054 | SFLD | Haloacid Dehalogenase | 424 | 884 | - | - | |
Sed11g1418 | 1054 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 441 | 447 | IPR018303 | - | |
Sed11g1418 | 1054 | Gene3D | - | 148 | 296 | - | - | |
Sed11g1418 | 1054 | PRINTS | P-type cation-transporting ATPase superfamily signature | 439 | 453 | - | - | |
Sed11g1418 | 1054 | PRINTS | P-type cation-transporting ATPase superfamily signature | 833 | 852 | - | - | |
Sed11g1418 | 1054 | Gene3D | - | 678 | 873 | IPR023214 | - | |
Sed11g1418 | 1054 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 48 | 1050 | - | GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER) | |
Sed11g1418 | 1054 | SUPERFAMILY | Calcium ATPase, transduction domain A | 153 | 294 | IPR008250 | - | |
Sed11g1418 | 1054 | SFLD | p-type atpase | 424 | 884 | IPR044492 | - | |
Sed11g1418 | 1054 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 445 | 690 | IPR023299 | GO:0000166(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g1418 | Sed-Chr11:30071204 | Sed11g1422 | Sed-Chr11:30107393 | 0.00E+00 | dispersed | |
Sed11g1418 | Sed-Chr11:30071204 | Sed11g1420 | Sed-Chr11:30085629 | 0.00E+00 | proximal | |
Sed11g1418 | Sed-Chr11:30071204 | Sed03g0546 | Sed-Chr3:3374973 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1418 | K14802 | - | csv:101212953 | 1520.75 |