Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1420 | ATGGATTCCCAAACCCTAACCGGGATCTCGCCGAATGTCGAACTCGCTTCCACCTCTTCCTCGGGGCCAGCTCAATCGTCCGTGGAATCCAAGCCTATTTTCCAGAACGAGACCGGCCATGAAGATTCGAGGTTAGTTTACATCGATGATCCGGATAAGACGAATCAAAACTTTGATTTCGCTGGAAATTTGATTCGTACTGGCAAGTATTCGATTCTTACTTTTCTACCCAGGAATCTGTTTGAACAATTTCATAGAATTGCTTATGTTTATTTCCTTGTTCTTGCGGTTCTTTGTCAACTTCCCCAGCTTGCTGTTTTTGGTCGGGGTGTCTCGATTTTACCTCTTGCATCTGTGCTGCTTGTTACAGCAGTTAAAGATGCATATGAGGATTGGAGAAGGTATCGTTCTGATAATTTTGTGAACAATAGGTTGGCTTCTGTTTTGATAAATGGGTGTTTTCGAGCTAAGAAATGGAAGGATATTAGAGTTGGGGAGATTGTTAAGGTTTATGCTGATGATACTGTTCCTTGTGATATGGTGCTTCTCTCTACCAGTGATTCCACTGGGGTTGCGTATGTGCGGACTCTGAATTTGGATGGGGAATCGACTTTGAAAACTAAGTACGCGAAGCAAGAGACCATGTCGAAGAGGCTGGCCGAGGAGAAGATTGTTGGGTTGATTAAATGTGAGAACCCCAATAGGCATATCTATGGATTTCATGCTAATATGGAGATTGATGGGAAACTTCTTTCTCTTGGATTTTCTAACATTCTTCTTCGTGGCTGTGAGCTCAAGAATACTAGTTGGGCTGTTGGTGTTGCTGTCTATACTGGATGTGAGACCAAAGCCATGCTTAACTGTTCCAGTGCTCCATCAAAAAGAAGCCGGCTCGAGATGCGCAAGAATGTGGAGATCATTATACTCTTTTTTTTTCTAATTGCTTTGTGCACTGTTGTTAGTGTTTGTGCTGCCTTCTGGTTCATCAGAAAGGGGGAAGTGTTGGACATTTTGCCTTATTTCAGAAAGAAGGATTTCTCGAAAGACCCACCTGAAACCTATAATTACTATGGCAGGGGATTGGATGCATTTTTTGTATTCCTCATGTCAGCCATTGTGTTTCAGATCATGGTCCCCATTTCTCTTTACATTTCAGTGGAGTTAGTTCGCCTAGGCCAGGCTTTTTTCCTGATCCGAGACATTGGAATGTATGATGAAACAACAAATTCAAGATTACAGTGTCGAGCTTTGAGCATAAATGAGGATTTAGGACAAATAAGGTATGTGTTTTCGGACAAAACAGGTACCCTTACTGAGAACAAGATGGAATTTCGATGTGCAAGCATCGGGGGGATCAATTATGATGGTGAAAGAACCAATCCCTTAGGCGAGCAGATTGGATACTCTGTTCAAGTGAATGGAAAGGTGCTGAGACCAAAAATGGCAGTTAAAATCAATTATGAGCTTCTAGGGTTAGTAAAAAGTGGAAAGCGTACTGATAAAGGGAAATATATTCACGATTTCTTCCTTGCATTAGCCGTTTGCAATACCCTTTTTCCTATCATTACTGAAACTTTTGATCCTTCGGTACAATTAATTGAATACCAAGGGCAATCTTCGGATGAACAGGCTTTGGTTTATGCTGCTGCGGCATATGGTTTTATGCTAATTGAACGAACTGCTGGCCATATGGTTATCAACGTGCATGGTGAAATGAAAAGGTATAACATTTTGGGAGTGCATGATTTTGATCCTGCCAGGAAGCGGATGTCAGTGATACTGGGGTGTCCTGATAGGACCTTCAAAGTATTTGTAAAAGGTGCTGACACCTCCATGTTCAATGTGATGGGTGAAATTCTGAACATGGATATCATTCAAGCGACTAAAGCCCATCTTCATTCATACTCCTCAGAGGGTCTTAGGACACTAGTTATTGGGATGAAAGAGCTCAGTCCTTCCGACTTTGAGAAATGGTACTTGATGTTTGAGCAAGCAAGCACTGCTTTGACCGGCCGGGGCGCTAAGCTTCGCAAGGTTGCCAGTACCATAGAAAACAATTTGTCCATATTGGGTGCATCAGGCACTGAAGATAAATTGCAAAAAGGTGTTCCAGAAGCCATAGAATCTTTAAGAACTGCCGGAATTAAAGTATGGGTTTTGACAGGGGACAAGCAAGAAAATGCCATATCAATTGGTTATTCCTCAGGGCTATTAACAAGCAAGATGACTCAAATTATAGTTAACAGCCACTCGGCAGAATCATGCCAAAGGATTTTAGAGAATGCAACTATCATGTCGAAAAAGTTTGCTAATGTGCCAGGGGCTACGCTGGATATAAGGGGAAAAAGCACTGAAATTGTAACAAATTCGATTGCGTTGATCATTGATGGTAGCAGCCTCGTGTATGTACTTGAACGTGAACTTGAAGAACAGTTTCTCGAACTAGCTTGTTGCTGTTCAGTTGTGTTATGTTGTCGCGTTGCCCCGTTGCAGAAAGCTGGAATTGTATCTCTTGTCAAGGAAAAGACTTCTGACATGACACTTGCGATTGGTGATGGTGTGAATGACGTGCCAATGATCCAAAAGGCGGATGTTGGCATAGGTATCAGCGGTAAAGAAGGTCAGCAAGCCGTCATGGCATCAGATTTTGCCATTGGGCAGTTTAGATTTTTGGTTCCTCTTCTATTGGTTCATGGACATTGGAATTACCAGAGGATGGGCTACATGATTTTGCACACTTTTTACAGGAGCGTAGTGTTTGTGCTTGTTTTATTTTGGTATGTGCTCTTTACTAGTTTCTCGCTGACAACGGCGATCAACCAATGGAGCAATGTGCTCTACCCTATAATCTCTACTTGTTTGCCTTCAATTGTTGTCGGAATTTTTGACAAGGACTTGGGTAAAAGGACTCTTCTTAGATACCCTCAGCTCTATAGGGCTGGCTATAGACAGGAGGGTTACAACTCTAGATTGTTCTGGTTAACGATGATTGACATTGTGTGGCAAAGCATTACTATTTTTTTCATCCCCCTCCTTGCATACTGGGCTACCACCATTGACGTTTCGAGCCTCGGAGATCTCTGGCTACTTGCCTTAGTCATCGTTGTCAATTTGCACTTGGCAATGGACATTGTTCAATGGAATTTCATAATTCATGCTGTGATTTGGGGTTCCGTTTTCACAACTGTCATTTGCGTCATTGTGTTTGATTCGTTGGTGTTGCTTCCCGGTTACTGGGCAATATACCATGTGGTAGGCACGGCGTTGTTTTGGCTATGTTTGTTAGCGGTTATCGTTGTAGCATTACTTCCTCGCTTTGTTGTAAAATACGTTTACCAGTACTGGAATCCATCTGATATCCAGGTAGCAAGAGAAGCTGATAAATTTGGAAGGACAGGAGAGTTGGGAGATGTTCAAACTTCAAATAGAGATGACCACAGTCCTCAATAA | 3450 | 42.29 | MDSQTLTGISPNVELASTSSSGPAQSSVESKPIFQNETGHEDSRLVYIDDPDKTNQNFDFAGNLIRTGKYSILTFLPRNLFEQFHRIAYVYFLVLAVLCQLPQLAVFGRGVSILPLASVLLVTAVKDAYEDWRRYRSDNFVNNRLASVLINGCFRAKKWKDIRVGEIVKVYADDTVPCDMVLLSTSDSTGVAYVRTLNLDGESTLKTKYAKQETMSKRLAEEKIVGLIKCENPNRHIYGFHANMEIDGKLLSLGFSNILLRGCELKNTSWAVGVAVYTGCETKAMLNCSSAPSKRSRLEMRKNVEIIILFFFLIALCTVVSVCAAFWFIRKGEVLDILPYFRKKDFSKDPPETYNYYGRGLDAFFVFLMSAIVFQIMVPISLYISVELVRLGQAFFLIRDIGMYDETTNSRLQCRALSINEDLGQIRYVFSDKTGTLTENKMEFRCASIGGINYDGERTNPLGEQIGYSVQVNGKVLRPKMAVKINYELLGLVKSGKRTDKGKYIHDFFLALAVCNTLFPIITETFDPSVQLIEYQGQSSDEQALVYAAAAYGFMLIERTAGHMVINVHGEMKRYNILGVHDFDPARKRMSVILGCPDRTFKVFVKGADTSMFNVMGEILNMDIIQATKAHLHSYSSEGLRTLVIGMKELSPSDFEKWYLMFEQASTALTGRGAKLRKVASTIENNLSILGASGTEDKLQKGVPEAIESLRTAGIKVWVLTGDKQENAISIGYSSGLLTSKMTQIIVNSHSAESCQRILENATIMSKKFANVPGATLDIRGKSTEIVTNSIALIIDGSSLVYVLERELEEQFLELACCCSVVLCCRVAPLQKAGIVSLVKEKTSDMTLAIGDGVNDVPMIQKADVGIGISGKEGQQAVMASDFAIGQFRFLVPLLLVHGHWNYQRMGYMILHTFYRSVVFVLVLFWYVLFTSFSLTTAINQWSNVLYPIISTCLPSIVVGIFDKDLGKRTLLRYPQLYRAGYRQEGYNSRLFWLTMIDIVWQSITIFFIPLLAYWATTIDVSSLGDLWLLALVIVVNLHLAMDIVQWNFIIHAVIWGSVFTTVICVIVFDSLVLLPGYWAIYHVVGTALFWLCLLAVIVVALLPRFVVKYVYQYWNPSDIQVAREADKFGRTGELGDVQTSNRDDHSPQ | 1149 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30085629 | 30090172 | + | Sed0007573.1 | Sed11g1420 | 730066 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1420 | 1149 | SFLD | Haloacid Dehalogenase | 414 | 901 | - | - | |
Sed11g1420 | 1149 | Gene3D | - | 687 | 890 | IPR023214 | - | |
Sed11g1420 | 1149 | Pfam | Cation transport ATPase (P-type) | 538 | 613 | - | - | |
Sed11g1420 | 1149 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 436 | 702 | IPR023299 | GO:0000166(InterPro) | |
Sed11g1420 | 1149 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Sed11g1420 | 1149 | NCBIfam | HAD-IC family P-type ATPase | 816 | 934 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed11g1420 | 1149 | FunFam | Phospholipid-transporting ATPase | 689 | 890 | - | - | |
Sed11g1420 | 1149 | FunFam | Phospholipid-transporting ATPase | 118 | 287 | - | - | |
Sed11g1420 | 1149 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 432 | 438 | IPR018303 | - | |
Sed11g1420 | 1149 | PRINTS | P-type cation-transporting ATPase superfamily signature | 850 | 869 | - | - | |
Sed11g1420 | 1149 | PRINTS | P-type cation-transporting ATPase superfamily signature | 2 | 16 | - | - | |
Sed11g1420 | 1149 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 878 | 1118 | IPR032630 | - | |
Sed11g1420 | 1149 | Pfam | Phospholipid-translocating ATPase N-terminal | 46 | 112 | IPR032631 | - | |
Sed11g1420 | 1149 | SUPERFAMILY | HAD-like | 425 | 896 | IPR036412 | - | |
Sed11g1420 | 1149 | Gene3D | - | 114 | 288 | - | - | |
Sed11g1420 | 1149 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 62 | 1117 | IPR023298 | - | |
Sed11g1420 | 1149 | CDD | P-type_ATPase_APLT_Dnf-like | 62 | 1010 | - | - | |
Sed11g1420 | 1149 | SUPERFAMILY | Calcium ATPase, transduction domain A | 143 | 284 | IPR008250 | - | |
Sed11g1420 | 1149 | NCBIfam | phospholipid-translocating P-type ATPase | 60 | 1125 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
Sed11g1420 | 1149 | Gene3D | - | 531 | 667 | IPR023299 | GO:0000166(InterPro) | |
Sed11g1420 | 1149 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 31 | 1118 | - | GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER) | |
Sed11g1420 | 1149 | SFLD | p-type atpase | 414 | 901 | IPR044492 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g1420 | Sed-Chr11:30085629 | Sed11g1422 | Sed-Chr11:30107393 | 0.00E+00 | dispersed | |
Sed11g1418 | Sed-Chr11:30071204 | Sed11g1420 | Sed-Chr11:30085629 | 0.00E+00 | proximal | |
Sed11g1420 | Sed-Chr11:30085629 | Sed11g1421 | Sed-Chr11:30093994 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1420 | K14802 | - | csv:101212953 | 1729.53 |