Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1420 ATGGATTCCCAAACCCTAACCGGGATCTCGCCGAATGTCGAACTCGCTTCCACCTCTTCCTCGGGGCCAGCTCAATCGTCCGTGGAATCCAAGCCTATTTTCCAGAACGAGACCGGCCATGAAGATTCGAGGTTAGTTTACATCGATGATCCGGATAAGACGAATCAAAACTTTGATTTCGCTGGAAATTTGATTCGTACTGGCAAGTATTCGATTCTTACTTTTCTACCCAGGAATCTGTTTGAACAATTTCATAGAATTGCTTATGTTTATTTCCTTGTTCTTGCGGTTCTTTGTCAACTTCCCCAGCTTGCTGTTTTTGGTCGGGGTGTCTCGATTTTACCTCTTGCATCTGTGCTGCTTGTTACAGCAGTTAAAGATGCATATGAGGATTGGAGAAGGTATCGTTCTGATAATTTTGTGAACAATAGGTTGGCTTCTGTTTTGATAAATGGGTGTTTTCGAGCTAAGAAATGGAAGGATATTAGAGTTGGGGAGATTGTTAAGGTTTATGCTGATGATACTGTTCCTTGTGATATGGTGCTTCTCTCTACCAGTGATTCCACTGGGGTTGCGTATGTGCGGACTCTGAATTTGGATGGGGAATCGACTTTGAAAACTAAGTACGCGAAGCAAGAGACCATGTCGAAGAGGCTGGCCGAGGAGAAGATTGTTGGGTTGATTAAATGTGAGAACCCCAATAGGCATATCTATGGATTTCATGCTAATATGGAGATTGATGGGAAACTTCTTTCTCTTGGATTTTCTAACATTCTTCTTCGTGGCTGTGAGCTCAAGAATACTAGTTGGGCTGTTGGTGTTGCTGTCTATACTGGATGTGAGACCAAAGCCATGCTTAACTGTTCCAGTGCTCCATCAAAAAGAAGCCGGCTCGAGATGCGCAAGAATGTGGAGATCATTATACTCTTTTTTTTTCTAATTGCTTTGTGCACTGTTGTTAGTGTTTGTGCTGCCTTCTGGTTCATCAGAAAGGGGGAAGTGTTGGACATTTTGCCTTATTTCAGAAAGAAGGATTTCTCGAAAGACCCACCTGAAACCTATAATTACTATGGCAGGGGATTGGATGCATTTTTTGTATTCCTCATGTCAGCCATTGTGTTTCAGATCATGGTCCCCATTTCTCTTTACATTTCAGTGGAGTTAGTTCGCCTAGGCCAGGCTTTTTTCCTGATCCGAGACATTGGAATGTATGATGAAACAACAAATTCAAGATTACAGTGTCGAGCTTTGAGCATAAATGAGGATTTAGGACAAATAAGGTATGTGTTTTCGGACAAAACAGGTACCCTTACTGAGAACAAGATGGAATTTCGATGTGCAAGCATCGGGGGGATCAATTATGATGGTGAAAGAACCAATCCCTTAGGCGAGCAGATTGGATACTCTGTTCAAGTGAATGGAAAGGTGCTGAGACCAAAAATGGCAGTTAAAATCAATTATGAGCTTCTAGGGTTAGTAAAAAGTGGAAAGCGTACTGATAAAGGGAAATATATTCACGATTTCTTCCTTGCATTAGCCGTTTGCAATACCCTTTTTCCTATCATTACTGAAACTTTTGATCCTTCGGTACAATTAATTGAATACCAAGGGCAATCTTCGGATGAACAGGCTTTGGTTTATGCTGCTGCGGCATATGGTTTTATGCTAATTGAACGAACTGCTGGCCATATGGTTATCAACGTGCATGGTGAAATGAAAAGGTATAACATTTTGGGAGTGCATGATTTTGATCCTGCCAGGAAGCGGATGTCAGTGATACTGGGGTGTCCTGATAGGACCTTCAAAGTATTTGTAAAAGGTGCTGACACCTCCATGTTCAATGTGATGGGTGAAATTCTGAACATGGATATCATTCAAGCGACTAAAGCCCATCTTCATTCATACTCCTCAGAGGGTCTTAGGACACTAGTTATTGGGATGAAAGAGCTCAGTCCTTCCGACTTTGAGAAATGGTACTTGATGTTTGAGCAAGCAAGCACTGCTTTGACCGGCCGGGGCGCTAAGCTTCGCAAGGTTGCCAGTACCATAGAAAACAATTTGTCCATATTGGGTGCATCAGGCACTGAAGATAAATTGCAAAAAGGTGTTCCAGAAGCCATAGAATCTTTAAGAACTGCCGGAATTAAAGTATGGGTTTTGACAGGGGACAAGCAAGAAAATGCCATATCAATTGGTTATTCCTCAGGGCTATTAACAAGCAAGATGACTCAAATTATAGTTAACAGCCACTCGGCAGAATCATGCCAAAGGATTTTAGAGAATGCAACTATCATGTCGAAAAAGTTTGCTAATGTGCCAGGGGCTACGCTGGATATAAGGGGAAAAAGCACTGAAATTGTAACAAATTCGATTGCGTTGATCATTGATGGTAGCAGCCTCGTGTATGTACTTGAACGTGAACTTGAAGAACAGTTTCTCGAACTAGCTTGTTGCTGTTCAGTTGTGTTATGTTGTCGCGTTGCCCCGTTGCAGAAAGCTGGAATTGTATCTCTTGTCAAGGAAAAGACTTCTGACATGACACTTGCGATTGGTGATGGTGTGAATGACGTGCCAATGATCCAAAAGGCGGATGTTGGCATAGGTATCAGCGGTAAAGAAGGTCAGCAAGCCGTCATGGCATCAGATTTTGCCATTGGGCAGTTTAGATTTTTGGTTCCTCTTCTATTGGTTCATGGACATTGGAATTACCAGAGGATGGGCTACATGATTTTGCACACTTTTTACAGGAGCGTAGTGTTTGTGCTTGTTTTATTTTGGTATGTGCTCTTTACTAGTTTCTCGCTGACAACGGCGATCAACCAATGGAGCAATGTGCTCTACCCTATAATCTCTACTTGTTTGCCTTCAATTGTTGTCGGAATTTTTGACAAGGACTTGGGTAAAAGGACTCTTCTTAGATACCCTCAGCTCTATAGGGCTGGCTATAGACAGGAGGGTTACAACTCTAGATTGTTCTGGTTAACGATGATTGACATTGTGTGGCAAAGCATTACTATTTTTTTCATCCCCCTCCTTGCATACTGGGCTACCACCATTGACGTTTCGAGCCTCGGAGATCTCTGGCTACTTGCCTTAGTCATCGTTGTCAATTTGCACTTGGCAATGGACATTGTTCAATGGAATTTCATAATTCATGCTGTGATTTGGGGTTCCGTTTTCACAACTGTCATTTGCGTCATTGTGTTTGATTCGTTGGTGTTGCTTCCCGGTTACTGGGCAATATACCATGTGGTAGGCACGGCGTTGTTTTGGCTATGTTTGTTAGCGGTTATCGTTGTAGCATTACTTCCTCGCTTTGTTGTAAAATACGTTTACCAGTACTGGAATCCATCTGATATCCAGGTAGCAAGAGAAGCTGATAAATTTGGAAGGACAGGAGAGTTGGGAGATGTTCAAACTTCAAATAGAGATGACCACAGTCCTCAATAA 3450 42.29 MDSQTLTGISPNVELASTSSSGPAQSSVESKPIFQNETGHEDSRLVYIDDPDKTNQNFDFAGNLIRTGKYSILTFLPRNLFEQFHRIAYVYFLVLAVLCQLPQLAVFGRGVSILPLASVLLVTAVKDAYEDWRRYRSDNFVNNRLASVLINGCFRAKKWKDIRVGEIVKVYADDTVPCDMVLLSTSDSTGVAYVRTLNLDGESTLKTKYAKQETMSKRLAEEKIVGLIKCENPNRHIYGFHANMEIDGKLLSLGFSNILLRGCELKNTSWAVGVAVYTGCETKAMLNCSSAPSKRSRLEMRKNVEIIILFFFLIALCTVVSVCAAFWFIRKGEVLDILPYFRKKDFSKDPPETYNYYGRGLDAFFVFLMSAIVFQIMVPISLYISVELVRLGQAFFLIRDIGMYDETTNSRLQCRALSINEDLGQIRYVFSDKTGTLTENKMEFRCASIGGINYDGERTNPLGEQIGYSVQVNGKVLRPKMAVKINYELLGLVKSGKRTDKGKYIHDFFLALAVCNTLFPIITETFDPSVQLIEYQGQSSDEQALVYAAAAYGFMLIERTAGHMVINVHGEMKRYNILGVHDFDPARKRMSVILGCPDRTFKVFVKGADTSMFNVMGEILNMDIIQATKAHLHSYSSEGLRTLVIGMKELSPSDFEKWYLMFEQASTALTGRGAKLRKVASTIENNLSILGASGTEDKLQKGVPEAIESLRTAGIKVWVLTGDKQENAISIGYSSGLLTSKMTQIIVNSHSAESCQRILENATIMSKKFANVPGATLDIRGKSTEIVTNSIALIIDGSSLVYVLERELEEQFLELACCCSVVLCCRVAPLQKAGIVSLVKEKTSDMTLAIGDGVNDVPMIQKADVGIGISGKEGQQAVMASDFAIGQFRFLVPLLLVHGHWNYQRMGYMILHTFYRSVVFVLVLFWYVLFTSFSLTTAINQWSNVLYPIISTCLPSIVVGIFDKDLGKRTLLRYPQLYRAGYRQEGYNSRLFWLTMIDIVWQSITIFFIPLLAYWATTIDVSSLGDLWLLALVIVVNLHLAMDIVQWNFIIHAVIWGSVFTTVICVIVFDSLVLLPGYWAIYHVVGTALFWLCLLAVIVVALLPRFVVKYVYQYWNPSDIQVAREADKFGRTGELGDVQTSNRDDHSPQ 1149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30085629 30090172 + Sed0007573.1 Sed11g1420 730066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1420 1149 SFLD Haloacid Dehalogenase 414 901 - -
Sed11g1420 1149 Gene3D - 687 890 IPR023214 -
Sed11g1420 1149 Pfam Cation transport ATPase (P-type) 538 613 - -
Sed11g1420 1149 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 436 702 IPR023299 GO:0000166(InterPro)
Sed11g1420 1149 MobiDBLite consensus disorder prediction 1 33 - -
Sed11g1420 1149 NCBIfam HAD-IC family P-type ATPase 816 934 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed11g1420 1149 FunFam Phospholipid-transporting ATPase 689 890 - -
Sed11g1420 1149 FunFam Phospholipid-transporting ATPase 118 287 - -
Sed11g1420 1149 ProSitePatterns E1-E2 ATPases phosphorylation site. 432 438 IPR018303 -
Sed11g1420 1149 PRINTS P-type cation-transporting ATPase superfamily signature 850 869 - -
Sed11g1420 1149 PRINTS P-type cation-transporting ATPase superfamily signature 2 16 - -
Sed11g1420 1149 Pfam Phospholipid-translocating P-type ATPase C-terminal 878 1118 IPR032630 -
Sed11g1420 1149 Pfam Phospholipid-translocating ATPase N-terminal 46 112 IPR032631 -
Sed11g1420 1149 SUPERFAMILY HAD-like 425 896 IPR036412 -
Sed11g1420 1149 Gene3D - 114 288 - -
Sed11g1420 1149 SUPERFAMILY Calcium ATPase, transmembrane domain M 62 1117 IPR023298 -
Sed11g1420 1149 CDD P-type_ATPase_APLT_Dnf-like 62 1010 - -
Sed11g1420 1149 SUPERFAMILY Calcium ATPase, transduction domain A 143 284 IPR008250 -
Sed11g1420 1149 NCBIfam phospholipid-translocating P-type ATPase 60 1125 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Sed11g1420 1149 Gene3D - 531 667 IPR023299 GO:0000166(InterPro)
Sed11g1420 1149 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 31 1118 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Sed11g1420 1149 SFLD p-type atpase 414 901 IPR044492 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1420 Sed-Chr11:30085629 Sed11g1422 Sed-Chr11:30107393 0.00E+00 dispersed
Sed11g1418 Sed-Chr11:30071204 Sed11g1420 Sed-Chr11:30085629 0.00E+00 proximal
Sed11g1420 Sed-Chr11:30085629 Sed11g1421 Sed-Chr11:30093994 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1420 K14802 - csv:101212953 1729.53