Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1421 | ATGTTGCGCCAACCATTTTCAGCGTCTGTTCACATCGATGATCCGGAAAAGACTAACAAAGAGTTTCATTTCGCTGGAAATTCGATTCGTACTAGCAAGTACTCTATTCTAACTTTTCTGCCCATGAATCTGTTTGAACAATTTCATAGAATTGCTTATCTATATTTCCTTGTTCTTGCGGTTCTTAGTCAACTTCCCCAGCTTGCCGTTTTTGGTCCGGGTGTCTCCATTTTCCCTCTTGCATCCGTGCTGCTAGTTACAGCAGTTAAAGATGCCTATGTTGATTGGAGAAAGCATCGTTCTGACAATTTTGTGAACAATAGAGAGGCTTCTGTTTTGATAAATGGGCGTTTTCAAGACAAGAAATGGAAGGATATTAGAGTTGGGGAGATTGTTAAGGTTCATAATAATGAGACTATTCCTAGTGATATGGTGCTTCTCTCTACCAGTGATCCCACTGGGGTTGCCTATGTGAATACTATGGCAGTGGATGGGGGATCAACTTTGAAAACTGCATACGCGATACCAGAGACGATGTCGAAAAGGCCGGAAGAGGAGAAGATTTTTGGGTGGATTCGTTGTAAGGAATCTAGAATGTATCACTATAACTTTGAAGCTGATATGGAGATTGATGGGAAACGTCGTTGTCTTGGAATTTCTAACCTACTTCTTCGTGGCTGTGAGCTCAAGAATACTAGTTGGGCTGTAGGTTTTGTTGTATATGCCGGTCGCCAGACCAGCACCATAGTTAATAGCTCGACTGCTTCATCGAAAAGAAGCAGGCTTGCGACGCGTAAGAATGTGGAGATCATTATACTATTTTTCTTGCTTAGTGTTTTGTGTATTGTTGTTAGTGTCTGTTCTGCCGTTTGGTTCATCGGAAAGGGGAAAGGTTTGGATATTTTGACTTATTTCAGAAAGAAAGATTTCTCTAAAGATCCACCTCAAACCTATAAGTATTATGGCAGGGGATTGGATGCATTTTTTGCACTCCTCATGTCAGCCATTGTGTTGCAGATCATGGTCCCCATTTCTCTTTACATTTCAATGGATTTCGTTCGCCTAGGCCAGGCTTATTTCATGATCAAAGCCGTCGGAATGTACGATGAAACAACAAATTCAAGATTACAGTGTCGAGCTTTGAGTATAAATGAGGATTTAGGACAAATAAGGTATGTGTTTTCAGCCACAACAGCCCTTACTGAGAATAAGATAGAATTTCGATGTGCGAGTATCGGGGGGATCAATTATGAAGGTGAAAGAACCATTCCCATAGGCGAGCAGATTGGATACTCTGTTCAAGTGAATGGAAAGTTGTTGAGACCAAAAATCGCAGTCAAAATCAATTCTGAGCTTCTAGAGTTATTGAAAAGTGGAAAGCATACCGACGAAGAGAAATATGTTCACAGTTTCTTCCTTGCTTTAGCCACTTGCAATACCATTTGTCCTCTCATTACTGAAACTTCTGATCCTTCTGTACAATTAATTGAATACCGAGGGGGGTCTTCGGATGAGCAAGCTTCGGTTTATGCTGCTGCGGCATATGGTTTTATGCTAATTGAACGAACTGCTGGCCATATGGTTATCAACGTGCATGGTGAAATGAAAAGGTATAACATTTTGGGAGTGCATGATTTTGATCCTGCCAGGAAGCGAATGTCAGTGATACTGGGGTGTCCTGATACGACCTTCAAAGTATTTGTAAAAGGTGCTGACACCTCCATGTTCAATGTGATGGGTGAAATTCTGAACATGGATATCATTCAAGCGACTAAAGCCCATCTTCATTCATACTCCTCAAAGGGTCTTAGGACACTAGTTATTGGGATGAAAGTGCTCAGTCCTTTCGACTTCGAAAAATGGTATTTGATGTTTGAGGAAGTAAGCACTGCTCTGACCAACAAGGACGCTAAGCTTCGCAAGGTTGCCAATAGCATAGAAAACAATTTGTTCATATTGGGTGCATGTGCATCAGGCACTGAAGATAAATTGCAAAAAGGTGTTCCAGAAGCCATCAAATCTTTAAGAACTGCCGGAATTAAAGTATGGGTTTTGGGGACAAGCAAGAAAATGCCATATCAACTGGTTATTCCTCAGGGCTATTAA | 2106 | 41.17 | MLRQPFSASVHIDDPEKTNKEFHFAGNSIRTSKYSILTFLPMNLFEQFHRIAYLYFLVLAVLSQLPQLAVFGPGVSIFPLASVLLVTAVKDAYVDWRKHRSDNFVNNREASVLINGRFQDKKWKDIRVGEIVKVHNNETIPSDMVLLSTSDPTGVAYVNTMAVDGGSTLKTAYAIPETMSKRPEEEKIFGWIRCKESRMYHYNFEADMEIDGKRRCLGISNLLLRGCELKNTSWAVGFVVYAGRQTSTIVNSSTASSKRSRLATRKNVEIIILFFLLSVLCIVVSVCSAVWFIGKGKGLDILTYFRKKDFSKDPPQTYKYYGRGLDAFFALLMSAIVLQIMVPISLYISMDFVRLGQAYFMIKAVGMYDETTNSRLQCRALSINEDLGQIRYVFSATTALTENKIEFRCASIGGINYEGERTIPIGEQIGYSVQVNGKLLRPKIAVKINSELLELLKSGKHTDEEKYVHSFFLALATCNTICPLITETSDPSVQLIEYRGGSSDEQASVYAAAAYGFMLIERTAGHMVINVHGEMKRYNILGVHDFDPARKRMSVILGCPDTTFKVFVKGADTSMFNVMGEILNMDIIQATKAHLHSYSSKGLRTLVIGMKVLSPFDFEKWYLMFEEVSTALTNKDAKLRKVANSIENNLFILGACASGTEDKLQKGVPEAIKSLRTAGIKVWVLGTSKKMPYQLVIPQGY | 701 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30093994 | 30096358 | + | Sed0008423.1 | Sed11g1421 | 730067 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1421 | 701 | Gene3D | - | 395 | 655 | IPR023299 | GO:0000166(InterPro) | |
Sed11g1421 | 701 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 20 | 687 | - | GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER) | |
Sed11g1421 | 701 | Pfam | Cation transport ATPase (P-type) | 520 | 576 | - | - | |
Sed11g1421 | 701 | Pfam | Phospholipid-translocating ATPase N-terminal | 10 | 76 | IPR032631 | - | |
Sed11g1421 | 701 | SUPERFAMILY | Calcium ATPase, transduction domain A | 107 | 247 | IPR008250 | - | |
Sed11g1421 | 701 | Pfam | E1-E2 ATPase | 107 | 305 | - | - | |
Sed11g1421 | 701 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 400 | 626 | IPR023299 | GO:0000166(InterPro) | |
Sed11g1421 | 701 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 24 | 388 | IPR023298 | - | |
Sed11g1421 | 701 | Gene3D | - | 656 | 691 | IPR023214 | - | |
Sed11g1421 | 701 | Gene3D | - | 84 | 252 | - | - | |
Sed11g1421 | 701 | NCBIfam | phospholipid-translocating P-type ATPase | 24 | 687 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g1421 | Sed-Chr11:30093994 | Sed14g0573 | Sed-Chr14:5720843 | 5.10E-180 | dispersed | |
Sed11g1420 | Sed-Chr11:30085629 | Sed11g1421 | Sed-Chr11:30093994 | 0.00E+00 | tandem | |
Sed11g1421 | Sed-Chr11:30093994 | Sed11g1422 | Sed-Chr11:30107393 | 4.10E-262 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1421 | K14802 | - | csv:101212953 | 963.37 |