Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1421 ATGTTGCGCCAACCATTTTCAGCGTCTGTTCACATCGATGATCCGGAAAAGACTAACAAAGAGTTTCATTTCGCTGGAAATTCGATTCGTACTAGCAAGTACTCTATTCTAACTTTTCTGCCCATGAATCTGTTTGAACAATTTCATAGAATTGCTTATCTATATTTCCTTGTTCTTGCGGTTCTTAGTCAACTTCCCCAGCTTGCCGTTTTTGGTCCGGGTGTCTCCATTTTCCCTCTTGCATCCGTGCTGCTAGTTACAGCAGTTAAAGATGCCTATGTTGATTGGAGAAAGCATCGTTCTGACAATTTTGTGAACAATAGAGAGGCTTCTGTTTTGATAAATGGGCGTTTTCAAGACAAGAAATGGAAGGATATTAGAGTTGGGGAGATTGTTAAGGTTCATAATAATGAGACTATTCCTAGTGATATGGTGCTTCTCTCTACCAGTGATCCCACTGGGGTTGCCTATGTGAATACTATGGCAGTGGATGGGGGATCAACTTTGAAAACTGCATACGCGATACCAGAGACGATGTCGAAAAGGCCGGAAGAGGAGAAGATTTTTGGGTGGATTCGTTGTAAGGAATCTAGAATGTATCACTATAACTTTGAAGCTGATATGGAGATTGATGGGAAACGTCGTTGTCTTGGAATTTCTAACCTACTTCTTCGTGGCTGTGAGCTCAAGAATACTAGTTGGGCTGTAGGTTTTGTTGTATATGCCGGTCGCCAGACCAGCACCATAGTTAATAGCTCGACTGCTTCATCGAAAAGAAGCAGGCTTGCGACGCGTAAGAATGTGGAGATCATTATACTATTTTTCTTGCTTAGTGTTTTGTGTATTGTTGTTAGTGTCTGTTCTGCCGTTTGGTTCATCGGAAAGGGGAAAGGTTTGGATATTTTGACTTATTTCAGAAAGAAAGATTTCTCTAAAGATCCACCTCAAACCTATAAGTATTATGGCAGGGGATTGGATGCATTTTTTGCACTCCTCATGTCAGCCATTGTGTTGCAGATCATGGTCCCCATTTCTCTTTACATTTCAATGGATTTCGTTCGCCTAGGCCAGGCTTATTTCATGATCAAAGCCGTCGGAATGTACGATGAAACAACAAATTCAAGATTACAGTGTCGAGCTTTGAGTATAAATGAGGATTTAGGACAAATAAGGTATGTGTTTTCAGCCACAACAGCCCTTACTGAGAATAAGATAGAATTTCGATGTGCGAGTATCGGGGGGATCAATTATGAAGGTGAAAGAACCATTCCCATAGGCGAGCAGATTGGATACTCTGTTCAAGTGAATGGAAAGTTGTTGAGACCAAAAATCGCAGTCAAAATCAATTCTGAGCTTCTAGAGTTATTGAAAAGTGGAAAGCATACCGACGAAGAGAAATATGTTCACAGTTTCTTCCTTGCTTTAGCCACTTGCAATACCATTTGTCCTCTCATTACTGAAACTTCTGATCCTTCTGTACAATTAATTGAATACCGAGGGGGGTCTTCGGATGAGCAAGCTTCGGTTTATGCTGCTGCGGCATATGGTTTTATGCTAATTGAACGAACTGCTGGCCATATGGTTATCAACGTGCATGGTGAAATGAAAAGGTATAACATTTTGGGAGTGCATGATTTTGATCCTGCCAGGAAGCGAATGTCAGTGATACTGGGGTGTCCTGATACGACCTTCAAAGTATTTGTAAAAGGTGCTGACACCTCCATGTTCAATGTGATGGGTGAAATTCTGAACATGGATATCATTCAAGCGACTAAAGCCCATCTTCATTCATACTCCTCAAAGGGTCTTAGGACACTAGTTATTGGGATGAAAGTGCTCAGTCCTTTCGACTTCGAAAAATGGTATTTGATGTTTGAGGAAGTAAGCACTGCTCTGACCAACAAGGACGCTAAGCTTCGCAAGGTTGCCAATAGCATAGAAAACAATTTGTTCATATTGGGTGCATGTGCATCAGGCACTGAAGATAAATTGCAAAAAGGTGTTCCAGAAGCCATCAAATCTTTAAGAACTGCCGGAATTAAAGTATGGGTTTTGGGGACAAGCAAGAAAATGCCATATCAACTGGTTATTCCTCAGGGCTATTAA 2106 41.17 MLRQPFSASVHIDDPEKTNKEFHFAGNSIRTSKYSILTFLPMNLFEQFHRIAYLYFLVLAVLSQLPQLAVFGPGVSIFPLASVLLVTAVKDAYVDWRKHRSDNFVNNREASVLINGRFQDKKWKDIRVGEIVKVHNNETIPSDMVLLSTSDPTGVAYVNTMAVDGGSTLKTAYAIPETMSKRPEEEKIFGWIRCKESRMYHYNFEADMEIDGKRRCLGISNLLLRGCELKNTSWAVGFVVYAGRQTSTIVNSSTASSKRSRLATRKNVEIIILFFLLSVLCIVVSVCSAVWFIGKGKGLDILTYFRKKDFSKDPPQTYKYYGRGLDAFFALLMSAIVLQIMVPISLYISMDFVRLGQAYFMIKAVGMYDETTNSRLQCRALSINEDLGQIRYVFSATTALTENKIEFRCASIGGINYEGERTIPIGEQIGYSVQVNGKLLRPKIAVKINSELLELLKSGKHTDEEKYVHSFFLALATCNTICPLITETSDPSVQLIEYRGGSSDEQASVYAAAAYGFMLIERTAGHMVINVHGEMKRYNILGVHDFDPARKRMSVILGCPDTTFKVFVKGADTSMFNVMGEILNMDIIQATKAHLHSYSSKGLRTLVIGMKVLSPFDFEKWYLMFEEVSTALTNKDAKLRKVANSIENNLFILGACASGTEDKLQKGVPEAIKSLRTAGIKVWVLGTSKKMPYQLVIPQGY 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30093994 30096358 + Sed0008423.1 Sed11g1421 730067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1421 701 Gene3D - 395 655 IPR023299 GO:0000166(InterPro)
Sed11g1421 701 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 20 687 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Sed11g1421 701 Pfam Cation transport ATPase (P-type) 520 576 - -
Sed11g1421 701 Pfam Phospholipid-translocating ATPase N-terminal 10 76 IPR032631 -
Sed11g1421 701 SUPERFAMILY Calcium ATPase, transduction domain A 107 247 IPR008250 -
Sed11g1421 701 Pfam E1-E2 ATPase 107 305 - -
Sed11g1421 701 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 400 626 IPR023299 GO:0000166(InterPro)
Sed11g1421 701 SUPERFAMILY Calcium ATPase, transmembrane domain M 24 388 IPR023298 -
Sed11g1421 701 Gene3D - 656 691 IPR023214 -
Sed11g1421 701 Gene3D - 84 252 - -
Sed11g1421 701 NCBIfam phospholipid-translocating P-type ATPase 24 687 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1421 Sed-Chr11:30093994 Sed14g0573 Sed-Chr14:5720843 5.10E-180 dispersed
Sed11g1420 Sed-Chr11:30085629 Sed11g1421 Sed-Chr11:30093994 0.00E+00 tandem
Sed11g1421 Sed-Chr11:30093994 Sed11g1422 Sed-Chr11:30107393 4.10E-262 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1421 K14802 - csv:101212953 963.37