Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1422 ATGGCTTCGGAGCGGCCGCTCTTGATTGTATCTCCAAGAACACTACCAAAACAACCAGAGCCAAGTCGACCTGGATTGTTCTTCGCCATGGATTCTCAAACCTCTAATGAGAACTTAGCGAGTACTGAACTGGGTCATCGCGCTTTCTCGCAGCCAAGTCAATCGAGGCCTGTTCGCCATGGCTCTCAAGGTGCTGATTCTGAAGCATTTAGCATATCCCAGATGGAGATCAGCGACGAAGATGCGAGGTTGATTCACATCAATGATCCAGAAAAAACGAACCACAAGTTCGAATTTGCTAGGAATTCGATTCGAACCAGCAAGTACTCGATTCTAACTTTTCTACCCAGAAACCTGTTTGAACAGTTTCATAGAGTTGCTTACATATATTTCCTTGTTATTGCAATTCTCAATCAACTGCCACAACTTGCTGTTTTTGGTCGCACAGTCTCCATTTTGCCTTTATCTTTTGTGCTTTTAGTTACTGCTGTTAAAGATGCATATGAGGATTGGAGAAGGCATCATTCAGATAGAATTGAGAATAATAGATTAGCTTCAGTTTTGGTAAATGGTCAGTTTCAAGATAAGAAATGGAAGGATATTAGAGTTGGTGAGATCATTAAGATTGGTGCAAATGGCACCATTCCTTGTGATATGGTGCTTCTCTCTACTAGTGATTCGACCGGGATTGCGTATGTGCAGACTCTGAATTTGGATGGAGAATCGAATTTGAAAACAAGGTATGCAAAGCAAGAGACGATGTCAGAAATACCCGACAAGGGGAAGATTGTTGGACTGATTAAATGTGAGAAACCCAATAGGAATATCTATGGATTTCAAGGTAATATGGAGATCGATGGGAAACGTCTAGCTCTTGGACCTCCCAACATCATTCTTCGTGGCTGTGAGCTCAAGAATACTAGTTGGACTGTTGGTGTTGCTGTATATGCTGGCTGTGAAACCAAAGCCTTGCTTAACGGTTCGGGATCTCCATCGAAAAGAAGTCGGCTCGAGACTCGCATGAATGCGGAGATTATTATGCTCTCTTTCTTTCTCATTGGTTTGTGTATAGTTGTTTGTGTTTTGGCTGCCGTTTGGTTCTTTAGAAATAGGGAAGATTTGGATGTTTTACCTTTTTTCAGAAAAAAGGATTACTCAAAAGGATGGGGATTGGAGGCGTTTTTTGTATTCCTTATGTCAGTCATTGTGTTTCAGATCATGATCCCCATTTCACTTTACATTTCGATGGAGCTTGTTCGTGTTGGCCAGGCTTATTTCATGATCCGAGACGCCAAAATGTATGACGAAACATCAAATTCAAGATTTCAATGTCGAGCCTTGAACATAAATGAGGATTTAGGACAGATTAAGTATGTGCTTTCAGACAAAACAGGTACTCTTACTGAGAATAAGATGGAGTTTCGATGTGCAAGCATATGGGGGGTCGATTATGGAGGTGAAATTACCAACCACCTCGACGAGCGGATTGGATACTCTGTTCGAGAGAGCGGTAAGGTTTTGAGACCGAAATTGGCTGTCAAAACCGACTCCGAGCTTCTACAGTTATCAAAAAGTGGAAAGCACAACAGGGGTGGAAGATACATTCACAATTTCTTCCTCGCATTAGCTGCTTGCAATACTATTGTTCCTCTCATTACTAAAAGTTCTGATCCTACAGTGCAATTAATTGACTACCAAGGGGAGTCTCCAGATGAACAGGCATTGGTTTATGCTGCTGCGGCATACGGTTTCATGCTAATCGAACGAACATCTGGCCATATAGTTATTGACATACATGGCGAAAAACAAAGGTATGATGTTTTGGGAATGCATGAGTTCGATAGCGACAGGAAGCGAATGTCAGTGATATTAGGGTGTCCTGATCTAACCTTCAAAGTATTTGTAAAAGGTGCTGATAACTCCATGTTCAAGGTGATGGGTGAAAATCTGAACATGGATATCATTCAAGCAACTAAAGCTCATCTTCATTCATACTCGTCAATAGGTCTGAGAACACTGGTTATTGGGATGAAAGAACTCAGTTCTTCTGACTTCGATCAATGGCACTTGATGTTTGAGGAAGCAAGCACCACTCTGATCGGTAGAGTCACTAAGCTTCGCAAGGTTGCGAGTAGGATAGAAAACAATTTGTCCATATTAGGTGCCTCAGGCATTGAAGATAAGTTGCAAAAAGGTGTACCAGAAGCCATAGAAGCTTTAAGAATGGCAGGGATTAAAATATGGGTTTTGACTGGGGACAAGCAAGAAACTGCCATATCAATAGGTTACTCCTCAAAGCTCTTAACAAACAAGATGACCCAAATTACAATTAACAGCAACTCGGTGGATTCATGCCAGCAGAGTTTAGAAGATGCAATAATCATGTCGAAAAATCTTGCGACTGCCTCGGGGATTACATTGGATAGTGAAGGACACACCGAAGTTCTGAAGTCTTCGTTCGCATTGATCATTGATGGTAGCAGCCTCGTTCATATTCTTGACAGTAGACTTGAAGAACAGCTTTTCCAACTATCGTGTCACTGTTCGGTGGTGTTGTGCTGTCGAGTCGCCCCATTGCAGAAAGCTGGAATTGTTTCTCTTGTCAAGAGAAGGACTTCTGACATGACACTTGCCATTGGTGATGGTGCAAATGATGTGTCCATGATCCAAAAGGCGGATGTGGGTGTTGGTATCAGTGGTCTAGAGGGTCGACAAGCTGTCATGGCATCGGATTTTGCCATGGCACAATTTCAATTCTTGGTTCCTCTTTTACTTGTCCATGGACATTGGAATTACCAGCGAATGGGCTACATGATCTTGTACAACTTCTACAGAAATGCAGTATTTGTGCTTATTTTATTTTGGTACGTGCTCTTTACCGATTATTCATTGACGACGGCGATCAACCAATGGAGCAGTGTACTATACTCTATAATCTATACTTGTTTGCCCACAATTGTTATTGGAATTCTCGACAAGGACTTGGGAAGAAGGACTCTTCTTAGTTACCCTCAGCTTTATGGGGCTGGCCACAGACAAGAGAGTTACAATTCTAGATTGTTTTGGTTAACAATGGTTGACACTGTGTGGCAAAGCATTGCTATTTTCTTCATCCCCCTCTTTGCATTCTGGGCTACCGACATCGACATTTCGGGCCTCGGAGATCTCTTGCTACTCTCCACCGTCATCGTTGTCAACTTGCACTTGGCAATGGATGTGTTTCGATGGTCTTCCATCACCCATGCAGTGATCTGGGGGTCCACTCTCGCAACTATCATTTGTGTCACTGTTCTTGATTCGGTATTGTCGCTTCCCGGTTACTGGGCGATATATAACGTGGCGGGCACGTCATCTTTTTGGCTTTGTTTGTTATTGAGCAGCGTATTATCACTACTTCCTCGTTTTGTCGTAAAATATCTGTATCAATACTACAGTCCATGTGACATTCAAATAGCAAGAGAGGGTGCAAAATTTGGAAGGAAAAGAGAGCTGGGAGATGTACAAACAGAGATGATCCCAGTTTTCAACAGTCCTTCACAACTATGA 3546 42.39 MASERPLLIVSPRTLPKQPEPSRPGLFFAMDSQTSNENLASTELGHRAFSQPSQSRPVRHGSQGADSEAFSISQMEISDEDARLIHINDPEKTNHKFEFARNSIRTSKYSILTFLPRNLFEQFHRVAYIYFLVIAILNQLPQLAVFGRTVSILPLSFVLLVTAVKDAYEDWRRHHSDRIENNRLASVLVNGQFQDKKWKDIRVGEIIKIGANGTIPCDMVLLSTSDSTGIAYVQTLNLDGESNLKTRYAKQETMSEIPDKGKIVGLIKCEKPNRNIYGFQGNMEIDGKRLALGPPNIILRGCELKNTSWTVGVAVYAGCETKALLNGSGSPSKRSRLETRMNAEIIMLSFFLIGLCIVVCVLAAVWFFRNREDLDVLPFFRKKDYSKGWGLEAFFVFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDAKMYDETSNSRFQCRALNINEDLGQIKYVLSDKTGTLTENKMEFRCASIWGVDYGGEITNHLDERIGYSVRESGKVLRPKLAVKTDSELLQLSKSGKHNRGGRYIHNFFLALAACNTIVPLITKSSDPTVQLIDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIHGEKQRYDVLGMHEFDSDRKRMSVILGCPDLTFKVFVKGADNSMFKVMGENLNMDIIQATKAHLHSYSSIGLRTLVIGMKELSSSDFDQWHLMFEEASTTLIGRVTKLRKVASRIENNLSILGASGIEDKLQKGVPEAIEALRMAGIKIWVLTGDKQETAISIGYSSKLLTNKMTQITINSNSVDSCQQSLEDAIIMSKNLATASGITLDSEGHTEVLKSSFALIIDGSSLVHILDSRLEEQLFQLSCHCSVVLCCRVAPLQKAGIVSLVKRRTSDMTLAIGDGANDVSMIQKADVGVGISGLEGRQAVMASDFAMAQFQFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLILFWYVLFTDYSLTTAINQWSSVLYSIIYTCLPTIVIGILDKDLGRRTLLSYPQLYGAGHRQESYNSRLFWLTMVDTVWQSIAIFFIPLFAFWATDIDISGLGDLLLLSTVIVVNLHLAMDVFRWSSITHAVIWGSTLATIICVTVLDSVLSLPGYWAIYNVAGTSSFWLCLLLSSVLSLLPRFVVKYLYQYYSPCDIQIAREGAKFGRKRELGDVQTEMIPVFNSPSQL 1181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30107393 30112157 + Sed0012070.1 Sed11g1422 730068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1422 1181 ProSitePatterns E1-E2 ATPases phosphorylation site. 462 468 IPR018303 -
Sed11g1422 1181 Pfam Cation transport ATPase (P-type) 568 644 - -
Sed11g1422 1181 Gene3D - 154 325 - -
Sed11g1422 1181 PRINTS P-type cation-transporting ATPase superfamily signature 321 335 - -
Sed11g1422 1181 PRINTS P-type cation-transporting ATPase superfamily signature 879 898 - -
Sed11g1422 1181 PRINTS P-type cation-transporting ATPase superfamily signature 460 474 - -
Sed11g1422 1181 SFLD C1.7: P-type atpase like 444 930 - -
Sed11g1422 1181 Gene3D - 560 704 IPR023299 GO:0000166(InterPro)
Sed11g1422 1181 SUPERFAMILY Calcium ATPase, transmembrane domain M 95 1145 IPR023298 -
Sed11g1422 1181 FunFam Phospholipid-transporting ATPase 719 919 - -
Sed11g1422 1181 Gene3D - 717 919 IPR023214 -
Sed11g1422 1181 SUPERFAMILY Calcium ATPase, transduction domain A 182 322 IPR008250 -
Sed11g1422 1181 MobiDBLite consensus disorder prediction 48 68 - -
Sed11g1422 1181 CDD P-type_ATPase_APLT_Dnf-like 101 1039 - -
Sed11g1422 1181 NCBIfam phospholipid-translocating P-type ATPase 99 1154 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Sed11g1422 1181 FunFam Phospholipid-transporting ATPase 157 326 - -
Sed11g1422 1181 FunFam Phospholipid-transporting ATPase 564 697 - -
Sed11g1422 1181 NCBIfam HAD-IC family P-type ATPase 849 960 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed11g1422 1181 Pfam Phospholipid-translocating ATPase N-terminal 85 152 IPR032631 -
Sed11g1422 1181 SUPERFAMILY HAD-like 447 920 IPR036412 -
Sed11g1422 1181 MobiDBLite consensus disorder prediction 1 32 - -
Sed11g1422 1181 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 466 732 IPR023299 GO:0000166(InterPro)
Sed11g1422 1181 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 73 1146 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Sed11g1422 1181 Pfam Phospholipid-translocating P-type ATPase C-terminal 907 1146 IPR032630 -
Sed11g1422 1181 SFLD p-type atpase 444 930 IPR044492 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0546 Sed-Chr3:3374973 Sed11g1422 Sed-Chr11:30107393 0.00E+00 dispersed
Sed11g1418 Sed-Chr11:30071204 Sed11g1422 Sed-Chr11:30107393 0.00E+00 dispersed
Sed11g1420 Sed-Chr11:30085629 Sed11g1422 Sed-Chr11:30107393 0.00E+00 dispersed
Sed11g1422 Sed-Chr11:30107393 Sed14g0573 Sed-Chr14:5720843 0.00E+00 dispersed
Sed11g1421 Sed-Chr11:30093994 Sed11g1422 Sed-Chr11:30107393 4.10E-262 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1422 K14802 - csv:101212953 2013.42