Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1422 | ATGGCTTCGGAGCGGCCGCTCTTGATTGTATCTCCAAGAACACTACCAAAACAACCAGAGCCAAGTCGACCTGGATTGTTCTTCGCCATGGATTCTCAAACCTCTAATGAGAACTTAGCGAGTACTGAACTGGGTCATCGCGCTTTCTCGCAGCCAAGTCAATCGAGGCCTGTTCGCCATGGCTCTCAAGGTGCTGATTCTGAAGCATTTAGCATATCCCAGATGGAGATCAGCGACGAAGATGCGAGGTTGATTCACATCAATGATCCAGAAAAAACGAACCACAAGTTCGAATTTGCTAGGAATTCGATTCGAACCAGCAAGTACTCGATTCTAACTTTTCTACCCAGAAACCTGTTTGAACAGTTTCATAGAGTTGCTTACATATATTTCCTTGTTATTGCAATTCTCAATCAACTGCCACAACTTGCTGTTTTTGGTCGCACAGTCTCCATTTTGCCTTTATCTTTTGTGCTTTTAGTTACTGCTGTTAAAGATGCATATGAGGATTGGAGAAGGCATCATTCAGATAGAATTGAGAATAATAGATTAGCTTCAGTTTTGGTAAATGGTCAGTTTCAAGATAAGAAATGGAAGGATATTAGAGTTGGTGAGATCATTAAGATTGGTGCAAATGGCACCATTCCTTGTGATATGGTGCTTCTCTCTACTAGTGATTCGACCGGGATTGCGTATGTGCAGACTCTGAATTTGGATGGAGAATCGAATTTGAAAACAAGGTATGCAAAGCAAGAGACGATGTCAGAAATACCCGACAAGGGGAAGATTGTTGGACTGATTAAATGTGAGAAACCCAATAGGAATATCTATGGATTTCAAGGTAATATGGAGATCGATGGGAAACGTCTAGCTCTTGGACCTCCCAACATCATTCTTCGTGGCTGTGAGCTCAAGAATACTAGTTGGACTGTTGGTGTTGCTGTATATGCTGGCTGTGAAACCAAAGCCTTGCTTAACGGTTCGGGATCTCCATCGAAAAGAAGTCGGCTCGAGACTCGCATGAATGCGGAGATTATTATGCTCTCTTTCTTTCTCATTGGTTTGTGTATAGTTGTTTGTGTTTTGGCTGCCGTTTGGTTCTTTAGAAATAGGGAAGATTTGGATGTTTTACCTTTTTTCAGAAAAAAGGATTACTCAAAAGGATGGGGATTGGAGGCGTTTTTTGTATTCCTTATGTCAGTCATTGTGTTTCAGATCATGATCCCCATTTCACTTTACATTTCGATGGAGCTTGTTCGTGTTGGCCAGGCTTATTTCATGATCCGAGACGCCAAAATGTATGACGAAACATCAAATTCAAGATTTCAATGTCGAGCCTTGAACATAAATGAGGATTTAGGACAGATTAAGTATGTGCTTTCAGACAAAACAGGTACTCTTACTGAGAATAAGATGGAGTTTCGATGTGCAAGCATATGGGGGGTCGATTATGGAGGTGAAATTACCAACCACCTCGACGAGCGGATTGGATACTCTGTTCGAGAGAGCGGTAAGGTTTTGAGACCGAAATTGGCTGTCAAAACCGACTCCGAGCTTCTACAGTTATCAAAAAGTGGAAAGCACAACAGGGGTGGAAGATACATTCACAATTTCTTCCTCGCATTAGCTGCTTGCAATACTATTGTTCCTCTCATTACTAAAAGTTCTGATCCTACAGTGCAATTAATTGACTACCAAGGGGAGTCTCCAGATGAACAGGCATTGGTTTATGCTGCTGCGGCATACGGTTTCATGCTAATCGAACGAACATCTGGCCATATAGTTATTGACATACATGGCGAAAAACAAAGGTATGATGTTTTGGGAATGCATGAGTTCGATAGCGACAGGAAGCGAATGTCAGTGATATTAGGGTGTCCTGATCTAACCTTCAAAGTATTTGTAAAAGGTGCTGATAACTCCATGTTCAAGGTGATGGGTGAAAATCTGAACATGGATATCATTCAAGCAACTAAAGCTCATCTTCATTCATACTCGTCAATAGGTCTGAGAACACTGGTTATTGGGATGAAAGAACTCAGTTCTTCTGACTTCGATCAATGGCACTTGATGTTTGAGGAAGCAAGCACCACTCTGATCGGTAGAGTCACTAAGCTTCGCAAGGTTGCGAGTAGGATAGAAAACAATTTGTCCATATTAGGTGCCTCAGGCATTGAAGATAAGTTGCAAAAAGGTGTACCAGAAGCCATAGAAGCTTTAAGAATGGCAGGGATTAAAATATGGGTTTTGACTGGGGACAAGCAAGAAACTGCCATATCAATAGGTTACTCCTCAAAGCTCTTAACAAACAAGATGACCCAAATTACAATTAACAGCAACTCGGTGGATTCATGCCAGCAGAGTTTAGAAGATGCAATAATCATGTCGAAAAATCTTGCGACTGCCTCGGGGATTACATTGGATAGTGAAGGACACACCGAAGTTCTGAAGTCTTCGTTCGCATTGATCATTGATGGTAGCAGCCTCGTTCATATTCTTGACAGTAGACTTGAAGAACAGCTTTTCCAACTATCGTGTCACTGTTCGGTGGTGTTGTGCTGTCGAGTCGCCCCATTGCAGAAAGCTGGAATTGTTTCTCTTGTCAAGAGAAGGACTTCTGACATGACACTTGCCATTGGTGATGGTGCAAATGATGTGTCCATGATCCAAAAGGCGGATGTGGGTGTTGGTATCAGTGGTCTAGAGGGTCGACAAGCTGTCATGGCATCGGATTTTGCCATGGCACAATTTCAATTCTTGGTTCCTCTTTTACTTGTCCATGGACATTGGAATTACCAGCGAATGGGCTACATGATCTTGTACAACTTCTACAGAAATGCAGTATTTGTGCTTATTTTATTTTGGTACGTGCTCTTTACCGATTATTCATTGACGACGGCGATCAACCAATGGAGCAGTGTACTATACTCTATAATCTATACTTGTTTGCCCACAATTGTTATTGGAATTCTCGACAAGGACTTGGGAAGAAGGACTCTTCTTAGTTACCCTCAGCTTTATGGGGCTGGCCACAGACAAGAGAGTTACAATTCTAGATTGTTTTGGTTAACAATGGTTGACACTGTGTGGCAAAGCATTGCTATTTTCTTCATCCCCCTCTTTGCATTCTGGGCTACCGACATCGACATTTCGGGCCTCGGAGATCTCTTGCTACTCTCCACCGTCATCGTTGTCAACTTGCACTTGGCAATGGATGTGTTTCGATGGTCTTCCATCACCCATGCAGTGATCTGGGGGTCCACTCTCGCAACTATCATTTGTGTCACTGTTCTTGATTCGGTATTGTCGCTTCCCGGTTACTGGGCGATATATAACGTGGCGGGCACGTCATCTTTTTGGCTTTGTTTGTTATTGAGCAGCGTATTATCACTACTTCCTCGTTTTGTCGTAAAATATCTGTATCAATACTACAGTCCATGTGACATTCAAATAGCAAGAGAGGGTGCAAAATTTGGAAGGAAAAGAGAGCTGGGAGATGTACAAACAGAGATGATCCCAGTTTTCAACAGTCCTTCACAACTATGA | 3546 | 42.39 | MASERPLLIVSPRTLPKQPEPSRPGLFFAMDSQTSNENLASTELGHRAFSQPSQSRPVRHGSQGADSEAFSISQMEISDEDARLIHINDPEKTNHKFEFARNSIRTSKYSILTFLPRNLFEQFHRVAYIYFLVIAILNQLPQLAVFGRTVSILPLSFVLLVTAVKDAYEDWRRHHSDRIENNRLASVLVNGQFQDKKWKDIRVGEIIKIGANGTIPCDMVLLSTSDSTGIAYVQTLNLDGESNLKTRYAKQETMSEIPDKGKIVGLIKCEKPNRNIYGFQGNMEIDGKRLALGPPNIILRGCELKNTSWTVGVAVYAGCETKALLNGSGSPSKRSRLETRMNAEIIMLSFFLIGLCIVVCVLAAVWFFRNREDLDVLPFFRKKDYSKGWGLEAFFVFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDAKMYDETSNSRFQCRALNINEDLGQIKYVLSDKTGTLTENKMEFRCASIWGVDYGGEITNHLDERIGYSVRESGKVLRPKLAVKTDSELLQLSKSGKHNRGGRYIHNFFLALAACNTIVPLITKSSDPTVQLIDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIHGEKQRYDVLGMHEFDSDRKRMSVILGCPDLTFKVFVKGADNSMFKVMGENLNMDIIQATKAHLHSYSSIGLRTLVIGMKELSSSDFDQWHLMFEEASTTLIGRVTKLRKVASRIENNLSILGASGIEDKLQKGVPEAIEALRMAGIKIWVLTGDKQETAISIGYSSKLLTNKMTQITINSNSVDSCQQSLEDAIIMSKNLATASGITLDSEGHTEVLKSSFALIIDGSSLVHILDSRLEEQLFQLSCHCSVVLCCRVAPLQKAGIVSLVKRRTSDMTLAIGDGANDVSMIQKADVGVGISGLEGRQAVMASDFAMAQFQFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLILFWYVLFTDYSLTTAINQWSSVLYSIIYTCLPTIVIGILDKDLGRRTLLSYPQLYGAGHRQESYNSRLFWLTMVDTVWQSIAIFFIPLFAFWATDIDISGLGDLLLLSTVIVVNLHLAMDVFRWSSITHAVIWGSTLATIICVTVLDSVLSLPGYWAIYNVAGTSSFWLCLLLSSVLSLLPRFVVKYLYQYYSPCDIQIAREGAKFGRKRELGDVQTEMIPVFNSPSQL | 1181 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30107393 | 30112157 | + | Sed0012070.1 | Sed11g1422 | 730068 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1422 | 1181 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 462 | 468 | IPR018303 | - | |
Sed11g1422 | 1181 | Pfam | Cation transport ATPase (P-type) | 568 | 644 | - | - | |
Sed11g1422 | 1181 | Gene3D | - | 154 | 325 | - | - | |
Sed11g1422 | 1181 | PRINTS | P-type cation-transporting ATPase superfamily signature | 321 | 335 | - | - | |
Sed11g1422 | 1181 | PRINTS | P-type cation-transporting ATPase superfamily signature | 879 | 898 | - | - | |
Sed11g1422 | 1181 | PRINTS | P-type cation-transporting ATPase superfamily signature | 460 | 474 | - | - | |
Sed11g1422 | 1181 | SFLD | C1.7: P-type atpase like | 444 | 930 | - | - | |
Sed11g1422 | 1181 | Gene3D | - | 560 | 704 | IPR023299 | GO:0000166(InterPro) | |
Sed11g1422 | 1181 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 95 | 1145 | IPR023298 | - | |
Sed11g1422 | 1181 | FunFam | Phospholipid-transporting ATPase | 719 | 919 | - | - | |
Sed11g1422 | 1181 | Gene3D | - | 717 | 919 | IPR023214 | - | |
Sed11g1422 | 1181 | SUPERFAMILY | Calcium ATPase, transduction domain A | 182 | 322 | IPR008250 | - | |
Sed11g1422 | 1181 | MobiDBLite | consensus disorder prediction | 48 | 68 | - | - | |
Sed11g1422 | 1181 | CDD | P-type_ATPase_APLT_Dnf-like | 101 | 1039 | - | - | |
Sed11g1422 | 1181 | NCBIfam | phospholipid-translocating P-type ATPase | 99 | 1154 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
Sed11g1422 | 1181 | FunFam | Phospholipid-transporting ATPase | 157 | 326 | - | - | |
Sed11g1422 | 1181 | FunFam | Phospholipid-transporting ATPase | 564 | 697 | - | - | |
Sed11g1422 | 1181 | NCBIfam | HAD-IC family P-type ATPase | 849 | 960 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed11g1422 | 1181 | Pfam | Phospholipid-translocating ATPase N-terminal | 85 | 152 | IPR032631 | - | |
Sed11g1422 | 1181 | SUPERFAMILY | HAD-like | 447 | 920 | IPR036412 | - | |
Sed11g1422 | 1181 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Sed11g1422 | 1181 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 466 | 732 | IPR023299 | GO:0000166(InterPro) | |
Sed11g1422 | 1181 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 73 | 1146 | - | GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER) | |
Sed11g1422 | 1181 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 907 | 1146 | IPR032630 | - | |
Sed11g1422 | 1181 | SFLD | p-type atpase | 444 | 930 | IPR044492 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0546 | Sed-Chr3:3374973 | Sed11g1422 | Sed-Chr11:30107393 | 0.00E+00 | dispersed | |
Sed11g1418 | Sed-Chr11:30071204 | Sed11g1422 | Sed-Chr11:30107393 | 0.00E+00 | dispersed | |
Sed11g1420 | Sed-Chr11:30085629 | Sed11g1422 | Sed-Chr11:30107393 | 0.00E+00 | dispersed | |
Sed11g1422 | Sed-Chr11:30107393 | Sed14g0573 | Sed-Chr14:5720843 | 0.00E+00 | dispersed | |
Sed11g1421 | Sed-Chr11:30093994 | Sed11g1422 | Sed-Chr11:30107393 | 4.10E-262 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1422 | K14802 | - | csv:101212953 | 2013.42 |