Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1444 ATGGGCGATCAGAGTTTGAAGACTCGTGTGGTGAAAAATGATTGCAGTCCTGAATGGAATGATGAGTTGACTCTCTCAATTGCAGATCTTAAGACTCCAATCCGTTTAGCAGTGTATGACAAAGACACACTAACAGTGCATGACAAAATGGGAGATGCCGAGATCGACATCGAACCATACATCGAGTGTTTGAAGATGGGACTGGGAAAACTCCCAGAGGGGTGTGTGGTTAAGAGAGTATATCCAGACAGAACAAACTGTTTAGCTGATGAGAGCCAATGTGTTATGACAAAGGGAAAAATTGTCCAGAATATGCATCTTAGGCTGAAGAATGTAGAGTGCGGCGAGGTGGTGATTCAGCTTGAATGGATCGATGTTCCGGGCGCTAAGGGGCTTCCGATGGAGGATGCGAGCCACTTCTGA 423 45.86 MGDQSLKTRVVKNDCSPEWNDELTLSIADLKTPIRLAVYDKDTLTVHDKMGDAEIDIEPYIECLKMGLGKLPEGCVVKRVYPDRTNCLADESQCVMTKGKIVQNMHLRLKNVECGEVVIQLEWIDVPGAKGLPMEDASHF 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30266181 30270009 - Sed0023708.1 Sed11g1444 730090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1444 140 Gene3D C2 domain 1 136 IPR035892 -
Sed11g1444 140 ProSiteProfiles C2 domain profile. 1 73 IPR000008 -
Sed11g1444 140 Pfam C2 domain 2 59 IPR000008 -
Sed11g1444 140 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 130 IPR044562 -
Sed11g1444 140 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 125 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1444 Sed-Chr11:30266181 Sed12g2119 Sed-Chr12:31868325 1.00E-39 dispersed
Sed11g1444 Sed-Chr11:30266181 Sed11g1445 Sed-Chr11:30266181 7.80E-80 tandem
Sed11g1444 Sed-Chr11:30266181 Sed03g1116 Sed-Chr3:6882830 8.70E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1444 - - - 0.0