Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1445 | ATGGAGCAGTTTTTGGGTCTTCTTCGAATTCGAGTTCTGCGCGGTGCTAATCTCGCTGTTCGTGATACCTGTAGCAGCGATCCTTTTGTAAATATCACGATGGGCGATCAGAGTTTGAAGACTCGTGTGGTGAAAAATGATTGCAGTCCTGAATGGAATGATGAGTTGACTCTCTCAATTGCAGATCTTAAGACTCCAATCCGTTTAGCAGTGTATGACAAAGACACACTAACAGTGCATGACAAAATGGGAGATGCCGAGATCGACATCGAACCATACATCGAGTGTTTGAAGATGGGACTGGGAAAACTCCCAGAGGGGTGTGTGGTTAAGAGAGTATATCCAGACAGAACAAACTGTTTAGCTGATGAGAGCCAATGTGTTATGACAAAGGGAAAAATTGTCCAGAATATGCATCTTAGGCTGAAGAATGTAGAGTGCGGCGAGGTGGTGATTCAGCTTGAATGGATCGATGTTCCGGGCGCTAAGGGGCTTCCGATGGAGGATGCGAGCCACTTCTGA | 522 | 45.98 | MEQFLGLLRIRVLRGANLAVRDTCSSDPFVNITMGDQSLKTRVVKNDCSPEWNDELTLSIADLKTPIRLAVYDKDTLTVHDKMGDAEIDIEPYIECLKMGLGKLPEGCVVKRVYPDRTNCLADESQCVMTKGKIVQNMHLRLKNVECGEVVIQLEWIDVPGAKGLPMEDASHF | 173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30266181 | 30270009 | - | Sed0023708.2 | Sed11g1445 | 730091 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1445 | 173 | Gene3D | C2 domain | 3 | 169 | IPR035892 | - | |
Sed11g1445 | 173 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 158 | IPR035892 | - | |
Sed11g1445 | 173 | Pfam | C2 domain | 6 | 92 | IPR000008 | - | |
Sed11g1445 | 173 | ProSiteProfiles | C2 domain profile. | 1 | 106 | IPR000008 | - | |
Sed11g1445 | 173 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 163 | IPR044562 | - | |
Sed11g1445 | 173 | SMART | C2_3c | 7 | 102 | IPR000008 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1116 | Sed-Chr3:6882830 | Sed11g1445 | Sed-Chr11:30266181 | 1.10E-78 | dispersed | |
Sed04g3031 | Sed-Chr4:41441341 | Sed11g1445 | Sed-Chr11:30266181 | 1.60E-53 | dispersed | |
Sed06g0179 | Sed-Chr6:1242089 | Sed11g1445 | Sed-Chr11:30266181 | 1.20E-55 | dispersed | |
Sed08g2759 | Sed-Chr8:39246157 | Sed11g1445 | Sed-Chr11:30266181 | 6.60E-53 | dispersed | |
Sed11g1445 | Sed-Chr11:30266181 | Sed12g2119 | Sed-Chr12:31868325 | 1.70E-52 | dispersed | |
Sed11g1444 | Sed-Chr11:30266181 | Sed11g1445 | Sed-Chr11:30266181 | 7.80E-80 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1445 | - | - | - | 0.0 |