Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1445 ATGGAGCAGTTTTTGGGTCTTCTTCGAATTCGAGTTCTGCGCGGTGCTAATCTCGCTGTTCGTGATACCTGTAGCAGCGATCCTTTTGTAAATATCACGATGGGCGATCAGAGTTTGAAGACTCGTGTGGTGAAAAATGATTGCAGTCCTGAATGGAATGATGAGTTGACTCTCTCAATTGCAGATCTTAAGACTCCAATCCGTTTAGCAGTGTATGACAAAGACACACTAACAGTGCATGACAAAATGGGAGATGCCGAGATCGACATCGAACCATACATCGAGTGTTTGAAGATGGGACTGGGAAAACTCCCAGAGGGGTGTGTGGTTAAGAGAGTATATCCAGACAGAACAAACTGTTTAGCTGATGAGAGCCAATGTGTTATGACAAAGGGAAAAATTGTCCAGAATATGCATCTTAGGCTGAAGAATGTAGAGTGCGGCGAGGTGGTGATTCAGCTTGAATGGATCGATGTTCCGGGCGCTAAGGGGCTTCCGATGGAGGATGCGAGCCACTTCTGA 522 45.98 MEQFLGLLRIRVLRGANLAVRDTCSSDPFVNITMGDQSLKTRVVKNDCSPEWNDELTLSIADLKTPIRLAVYDKDTLTVHDKMGDAEIDIEPYIECLKMGLGKLPEGCVVKRVYPDRTNCLADESQCVMTKGKIVQNMHLRLKNVECGEVVIQLEWIDVPGAKGLPMEDASHF 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30266181 30270009 - Sed0023708.2 Sed11g1445 730091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1445 173 Gene3D C2 domain 3 169 IPR035892 -
Sed11g1445 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 158 IPR035892 -
Sed11g1445 173 Pfam C2 domain 6 92 IPR000008 -
Sed11g1445 173 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Sed11g1445 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
Sed11g1445 173 SMART C2_3c 7 102 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1116 Sed-Chr3:6882830 Sed11g1445 Sed-Chr11:30266181 1.10E-78 dispersed
Sed04g3031 Sed-Chr4:41441341 Sed11g1445 Sed-Chr11:30266181 1.60E-53 dispersed
Sed06g0179 Sed-Chr6:1242089 Sed11g1445 Sed-Chr11:30266181 1.20E-55 dispersed
Sed08g2759 Sed-Chr8:39246157 Sed11g1445 Sed-Chr11:30266181 6.60E-53 dispersed
Sed11g1445 Sed-Chr11:30266181 Sed12g2119 Sed-Chr12:31868325 1.70E-52 dispersed
Sed11g1444 Sed-Chr11:30266181 Sed11g1445 Sed-Chr11:30266181 7.80E-80 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1445 - - - 0.0