Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1488 ATGTTGAAAGCTTATTCTCCTCCTGCATCAGCAGCAGCTACAGCTTCTCCCCCCAATTCTGACCACACCACCAAGAGAAAAAGAAGACCTGCAGGAACCCCAGATCCGGATGCAGAAGTCGTTTCCTTATCCCCGAAGACGCTCTTGGAATCCGATCGGTACGTTTGCGAGATATGCAACCAAGGGTTTCAAAGGGATCAGAATCTGCAGATGCACCGGCGCCGCCACAAGGTGCCGTGGAAGCTGCTGAAGAGGGCGGAGACGGCGGAGGTGGTGAAGAAACGGGTGTTTGTTTGCCCCGAGCCGACATGTCTTCACCACGACCCTTGCCACGCCCTCGGCGACCTCGTTGGCATCAAGAAGCATTTTAGGAGAAAGCATAGCAACCAGAAGCAGTGGGTTTGTGATAAGTGCTCTAAGGGCTATGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGCGGTCGTGTCTTTTCCAGAGTGGAGAGTTTCATAGAACACCAAGATGCTTGTAATCTCCGGCAGATGAGGTCCGATGATCAGTTGCATACGGTGGCACCATCACCGCGGTTACCGCAACCCTACGCACCGTCAATTTCTTACAACGGTGCCTCCACGAGCAACAGTCACAGATTTCAAATGGCCACTCCATTACGAGGGTTTCCAATTTTATCATCGGATCGAAACATCAACATTAATATTCCGGATGACCATGATCTCGAGCTCCATCTTTCATCTCCAAGCTCGGCATTTCTAAAGCTCTCAATTGGGTCCAACAAGGAGCTAAAGGACGAGCGAGAAATTGATCTGGCGATAGCGGAGAAGGCATATGCAGAAGAAGCAAGGCGAGAGGCGAAACGACAGATCGAGATCGCCGAGGTAGAGTTTGCAAATGCCAAAATGATACGGAAGCAAGCTCGGGCGGAGTTGGAGAAGGCTAGGATCTTGAAGGAAGAAGCCAGCCAGAAAATGACCTCCACCATTATGGAAATCACTTGCCAAACATGCCGGTTGCACTTCCATATGAGCTCCATTGCGCCCGAGGAGACCTCGCTCGCCATCAGCTACATGTCGTCCGCTACGACAGAAGGTGATGGCGAGTAA 1134 51.15 MLKAYSPPASAAATASPPNSDHTTKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAEVVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKGYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLRQMRSDDQLHTVAPSPRLPQPYAPSISYNGASTSNSHRFQMATPLRGFPILSSDRNININIPDDHDLELHLSSPSSAFLKLSIGSNKELKDEREIDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRKQARAELEKARILKEEASQKMTSTIMEITCQTCRLHFHMSSIAPEETSLAISYMSSATTEGDGE 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30634818 30636905 - Sed0020686.1 Sed11g1488 730134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1488 377 Gene3D Classic Zinc Finger 32 98 - -
Sed11g1488 377 Gene3D Classic Zinc Finger 118 195 - -
Sed11g1488 377 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Sed11g1488 377 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 160 182 - -
Sed11g1488 377 MobiDBLite consensus disorder prediction 1 41 - -
Sed11g1488 377 FunFam protein indeterminate-domain 12-like 33 103 - -
Sed11g1488 377 Coils Coil 278 333 - -
Sed11g1488 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Sed11g1488 377 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 93 127 - -
Sed11g1488 377 SUPERFAMILY beta-beta-alpha zinc fingers 53 153 IPR036236 -
Sed11g1488 377 SMART c2h2final6 54 76 IPR013087 -
Sed11g1488 377 SMART c2h2final6 97 127 IPR013087 -
Sed11g1488 377 SMART c2h2final6 133 160 IPR013087 -
Sed11g1488 377 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 284 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed11g1488 377 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 132 156 - -
Sed11g1488 377 Pfam Zinc finger, C2H2 type 54 76 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2777 Sed-Chr8:39353235 Sed11g1488 Sed-Chr11:30634818 3.50E-95 dispersed
Sed11g1488 Sed-Chr11:30634818 Sed14g1101 Sed-Chr14:20503976 1.50E-61 dispersed
Sed11g1488 Sed-Chr11:30634818 Sed03g1073 Sed-Chr3:6530278 5.20E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40001 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1488 K25871 - csv:101210468 603.208