Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1488 | ATGTTGAAAGCTTATTCTCCTCCTGCATCAGCAGCAGCTACAGCTTCTCCCCCCAATTCTGACCACACCACCAAGAGAAAAAGAAGACCTGCAGGAACCCCAGATCCGGATGCAGAAGTCGTTTCCTTATCCCCGAAGACGCTCTTGGAATCCGATCGGTACGTTTGCGAGATATGCAACCAAGGGTTTCAAAGGGATCAGAATCTGCAGATGCACCGGCGCCGCCACAAGGTGCCGTGGAAGCTGCTGAAGAGGGCGGAGACGGCGGAGGTGGTGAAGAAACGGGTGTTTGTTTGCCCCGAGCCGACATGTCTTCACCACGACCCTTGCCACGCCCTCGGCGACCTCGTTGGCATCAAGAAGCATTTTAGGAGAAAGCATAGCAACCAGAAGCAGTGGGTTTGTGATAAGTGCTCTAAGGGCTATGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGCGGTCGTGTCTTTTCCAGAGTGGAGAGTTTCATAGAACACCAAGATGCTTGTAATCTCCGGCAGATGAGGTCCGATGATCAGTTGCATACGGTGGCACCATCACCGCGGTTACCGCAACCCTACGCACCGTCAATTTCTTACAACGGTGCCTCCACGAGCAACAGTCACAGATTTCAAATGGCCACTCCATTACGAGGGTTTCCAATTTTATCATCGGATCGAAACATCAACATTAATATTCCGGATGACCATGATCTCGAGCTCCATCTTTCATCTCCAAGCTCGGCATTTCTAAAGCTCTCAATTGGGTCCAACAAGGAGCTAAAGGACGAGCGAGAAATTGATCTGGCGATAGCGGAGAAGGCATATGCAGAAGAAGCAAGGCGAGAGGCGAAACGACAGATCGAGATCGCCGAGGTAGAGTTTGCAAATGCCAAAATGATACGGAAGCAAGCTCGGGCGGAGTTGGAGAAGGCTAGGATCTTGAAGGAAGAAGCCAGCCAGAAAATGACCTCCACCATTATGGAAATCACTTGCCAAACATGCCGGTTGCACTTCCATATGAGCTCCATTGCGCCCGAGGAGACCTCGCTCGCCATCAGCTACATGTCGTCCGCTACGACAGAAGGTGATGGCGAGTAA | 1134 | 51.15 | MLKAYSPPASAAATASPPNSDHTTKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAEVVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKGYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLRQMRSDDQLHTVAPSPRLPQPYAPSISYNGASTSNSHRFQMATPLRGFPILSSDRNININIPDDHDLELHLSSPSSAFLKLSIGSNKELKDEREIDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRKQARAELEKARILKEEASQKMTSTIMEITCQTCRLHFHMSSIAPEETSLAISYMSSATTEGDGE | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30634818 | 30636905 | - | Sed0020686.1 | Sed11g1488 | 730134 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1488 | 377 | Gene3D | Classic Zinc Finger | 32 | 98 | - | - | |
Sed11g1488 | 377 | Gene3D | Classic Zinc Finger | 118 | 195 | - | - | |
Sed11g1488 | 377 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 56 | 76 | IPR013087 | - | |
Sed11g1488 | 377 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 160 | 182 | - | - | |
Sed11g1488 | 377 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Sed11g1488 | 377 | FunFam | protein indeterminate-domain 12-like | 33 | 103 | - | - | |
Sed11g1488 | 377 | Coils | Coil | 278 | 333 | - | - | |
Sed11g1488 | 377 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 54 | 76 | IPR013087 | - | |
Sed11g1488 | 377 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 93 | 127 | - | - | |
Sed11g1488 | 377 | SUPERFAMILY | beta-beta-alpha zinc fingers | 53 | 153 | IPR036236 | - | |
Sed11g1488 | 377 | SMART | c2h2final6 | 54 | 76 | IPR013087 | - | |
Sed11g1488 | 377 | SMART | c2h2final6 | 97 | 127 | IPR013087 | - | |
Sed11g1488 | 377 | SMART | c2h2final6 | 133 | 160 | IPR013087 | - | |
Sed11g1488 | 377 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 14 | 284 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed11g1488 | 377 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 132 | 156 | - | - | |
Sed11g1488 | 377 | Pfam | Zinc finger, C2H2 type | 54 | 76 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2777 | Sed-Chr8:39353235 | Sed11g1488 | Sed-Chr11:30634818 | 3.50E-95 | dispersed | |
Sed11g1488 | Sed-Chr11:30634818 | Sed14g1101 | Sed-Chr14:20503976 | 1.50E-61 | dispersed | |
Sed11g1488 | Sed-Chr11:30634818 | Sed03g1073 | Sed-Chr3:6530278 | 5.20E-163 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40001 | None | None | None | None | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1488 | K25871 | - | csv:101210468 | 603.208 |