Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1510 ATGACTGTTGACATTCATAACTCTGTTTCTCAAGACCCCAACTCATTTCCCAAAGAAATTCACGATCCTCCCCCAAACCCAGATGAAACCGATCAAGATTCCGATCATCCCAACCTCGCCGGAGAACTTCCCATTTCGTCCCCTGTTCAAGAAACCCAGTTAAATCTCGAACCCCCATCTTCTTCTTCACAGGATTCAACCCATCAATCGAATCCCAATAATGGCGAAATGAGCGTATTGGAGCCTCATTCTCGCCTTCCTAAACCCACGGCCCCACCGGGAATCTCTGTTTCATCCGCCGGTGAACCGCCGTGCGAACCGTCTCAGAGCTCGGCCGAGAATATCTCGATCGGAAAGTACATATGGGATAGAACCAACAGTTTATCGGCGACGTTCTTCAAGCGGGTTTCGTCGCTAAAAGAAGAACAGAACCCCCAAATCGGCGTTACAGAAATCAAACTCTCCGGCGTCAAAGTCGTCGTGAAAATGAAAATCGACGAGGAGAAAAACAGAGAACTGAAGGGAAGAATCAGCTTCTTCTCGAGGTCGAATTGCAGGGATTGCAAAGCGGTGAGAAGTTTCTTCAACGAAAAGGGATTGAGATTCGTTGAAATAAACGTCGACGTTTTCCCCCAAAGAGAGATTGAGCTGATGAACAGAACAGGGAGTTCATCGGTGCCGCAGATTTTCTTCAACGAGAAGCTTTTTGGGTGTTTAGTGGCGCTGAATTCGCTGAGAAATAGCGGCGAGTTTGACCGGAGAATCGAAGATATGTTGGGCGATGAATGCTCCGTCGAGGCACCGGCGCCGCCGGTATACGGTGTCGACGATCCGGCGGAGGGGTCGCCGGAGGAATTATTGGAGATCGTGAAATTTCTGAGACAGAGATTGCCGATTCAGGACCGTTTGATCAAGATGAAGATCGTGAAGAACTGCTTTTCCGGCAGCGAAATGGTTAAGGCGATGATTCAGCGCCTTGATTGTGGGCGTTCAAAGGCAGTTGAAATTGGAAGGCAGATGGCCCAGAAGCTCTTTATCCATCATGTTTTTGGGGAAAATGAGTTTGAAGATGGGAACTATTTCTATCGTTTCCTTGAGCATGGACCATCCATATCTGGGTGCCTAAATTTCAGGGGCTCAGTCAATGACAATGAGCCAAAGCCAGCCGCCATTGTGGCCCAAAGGCTCGCCAAGATCATGTCCGCCATTTTAGAGTCCTACGCCTCTCAAGATCTTCAACACCTTGATTATATAGCCATTACCAACAGTGAAGAATTTCGAAGGTACATAAATTTAACACAAGAGCTTCACCGGCTGAACCTGTTGGAGCTGTCACATGATGAAAAGTTAGCCTTTTTCTTGAACCTGTACAATGCAATGGTGATCCATGGCTTGGTTCGATTTGGACGGCTAGAGGGTGTAGTAGACAGAAAAAGCTTCTTCTCCGACTTGCAGTACTTGGTGGGCGGGCAGCCATATTCGCTCATCGCCGTAAAGAATGGGATTCTCAGAGCCAATGCAAGGCCTCCCTATTCCTTCTCCAAGCCCTTCAGCACCAATGACAAGCGATTGCAGGTTGCATTTGAAAAAGTGAATCCATTAATTCACTTTGGACTATGCAATGGAACAAAGTCAAGCCCAAGAGTGAGATTCTATACTCCTCAAGGAGTTGAAGCTGAACTAAGATGTGCTGCAAGGGAATTCTTCCAAACTGGGGGAATTGAGGTTGACTTGGACAAAAGAACTGTCTATCTCACTGGAATTATCAAATGGTTCAGTGTGGACTTTGGACATGAAAAAGAGATAGTGAGGTGGATAATGAGGTTCTTGGATGCCAATAAAGCAGGTCTTTTGACACACCTTTTGGGAGATGGAGGTCCACTCAACATTGCCTACCAGAACTATGATTGGACCATCAATTCTTCTTGA 1929 46.86 MTVDIHNSVSQDPNSFPKEIHDPPPNPDETDQDSDHPNLAGELPISSPVQETQLNLEPPSSSSQDSTHQSNPNNGEMSVLEPHSRLPKPTAPPGISVSSAGEPPCEPSQSSAENISIGKYIWDRTNSLSATFFKRVSSLKEEQNPQIGVTEIKLSGVKVVVKMKIDEEKNRELKGRISFFSRSNCRDCKAVRSFFNEKGLRFVEINVDVFPQREIELMNRTGSSSVPQIFFNEKLFGCLVALNSLRNSGEFDRRIEDMLGDECSVEAPAPPVYGVDDPAEGSPEELLEIVKFLRQRLPIQDRLIKMKIVKNCFSGSEMVKAMIQRLDCGRSKAVEIGRQMAQKLFIHHVFGENEFEDGNYFYRFLEHGPSISGCLNFRGSVNDNEPKPAAIVAQRLAKIMSAILESYASQDLQHLDYIAITNSEEFRRYINLTQELHRLNLLELSHDEKLAFFLNLYNAMVIHGLVRFGRLEGVVDRKSFFSDLQYLVGGQPYSLIAVKNGILRANARPPYSFSKPFSTNDKRLQVAFEKVNPLIHFGLCNGTKSSPRVRFYTPQGVEAELRCAAREFFQTGGIEVDLDKRTVYLTGIIKWFSVDFGHEKEIVRWIMRFLDANKAGLLTHLLGDGGPLNIAYQNYDWTINSS 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30753912 30762744 - Sed0016314.1 Sed11g1510 730156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1510 642 Pfam Protein of unknown function, DUF547 443 568 IPR006869 -
Sed11g1510 642 Gene3D - 284 414 IPR036388 -
Sed11g1510 642 ProSiteProfiles Glutaredoxin domain profile. 165 262 - -
Sed11g1510 642 CDD GRX_DEP 175 247 - -
Sed11g1510 642 MobiDBLite consensus disorder prediction 22 36 - -
Sed11g1510 642 ProSiteProfiles DEP domain profile. 293 366 IPR000591 GO:0035556(InterPro)
Sed11g1510 642 MobiDBLite consensus disorder prediction 45 78 - -
Sed11g1510 642 MobiDBLite consensus disorder prediction 1 15 - -
Sed11g1510 642 MobiDBLite consensus disorder prediction 1 111 - -
Sed11g1510 642 SUPERFAMILY Thioredoxin-like 174 257 IPR036249 -
Sed11g1510 642 CDD DEP 285 363 - -
Sed11g1510 642 Gene3D Glutaredoxin 173 258 - -
Sed11g1510 642 SMART DEP_3 293 366 IPR000591 GO:0035556(InterPro)
Sed11g1510 642 SUPERFAMILY Winged helix DNA-binding domain 285 388 IPR036390 -
Sed11g1510 642 Pfam Glutaredoxin 179 235 IPR002109 -
Sed11g1510 642 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 297 364 IPR000591 GO:0035556(InterPro)
Sed11g1510 642 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 51 640 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1510 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0657 Sed-Chr3:3995190 Sed11g1510 Sed-Chr11:30753912 4.90E-112 dispersed
Sed03g0658 Sed-Chr3:3996608 Sed11g1510 Sed-Chr11:30753912 1.70E-103 dispersed
Sed11g1510 Sed-Chr11:30753912 Sed13g1717 Sed-Chr13:22207445 1.30E-17 dispersed
Sed11g1510 Sed-Chr11:30753912 Sed03g1044 Sed-Chr3:6391812 2.10E-289 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g352 . . . . . . . . . . . . . . Sed11g1510 . . Bhi04g02500 Tan11g0084 Cmetu09g1872 . Hepe02g3440 . Lcy10g2331 . . . . . . . . Cone7ag1572 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00765 Cam11g0798 Cec11g0780 Cco11g0785 Clacu11g1059 Cmu11g0919 Cre11g1244 . . Chy03g00066 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007007 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 2 1 1 37