Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1511 ATGAACGGAGATGCAGCTTCGACGGCGGCCGCCGCCGCCGCTCCGGCGGGCTCCGCCGAGCCGCAGTACGCGACGGCGAAGACTTCCATATGGTGGGACATCGAGAACTGTCAAGTCCCGAAGGGCTGCGACCCTCACGCCATCGCCCAAAACATCAGCTCCGCCCTCGTCAAAATCAACTACTGCGGTCCTGTTTCCATCTCCGCTTATGGAGACACGAATCGCATTCCTAGTTACATTCAGCAAGCTCTCTCCTCTACTGGCATCGCCTTGAATCACGTCCCTGCCGGTGTTAAAGATGCAAGTGACAAGAAGATTCTAGTTGATATGTTGTTTTGGGCGGTTGATAACCCTGCTCCTGCAAATTATTTGCTAATTTCCGGTGATAGAGATTTTTCTAATGCCCTTCATCAATTAAGAATGAGAAGATATAATATTCTTCTTGCACAGCCACAAAAGGCTTCTGCACCACTAGTTGCAGCTGCAAAGAGTGTTTGGCTTTGGATGAGTCTTGTAGCTGGAGGGCCCCCATTATCCACTGCTGAATCATCTCAAATTTTGAATGGTATCCTTACTTCTGACCCGCCAATATCACATAACTCTGGGTTTGATCATAATCAGACTTCACAAGCTATAGTCTACAAATCTAAAGATAAACATATACAGAAAAGTGTCCTATCCAGAGCTTTAAGCTCACCTGTTTCTATGCAAGAGAAAAACATTATTATTTTAAACCAACCAAATCATATGCAAACAAAGCAGTTTAAGAAAGCACCCCATGAATTCTTTGGCAATGAAAGTTCTGTAGCCTCTTCTAATCAGTCTACCCCAAACATGTTCATTGAAAATTCCAGTCATGCTAGGCCTGATGCCAATGTTTCAGTGGGTAGTTCTTCAAGTTACCAGACTCCGCACATGAGGCAAAACAATATGCAGTTCCATCCTTCTTTTCGACCAGATAATTCTTTTTCTCCCAACTCCTATAATCATAATTCTTTTCCAGTTCCTGGTCAACCTGATGTCTCGACACCCAACATTAGTAAGCGACATATCTCAGATTATCCCTATCATGCTTCTTCACCAGTCCCTGGTCAACCTGATTTCTCTGCACCCAATATTAGTAATCTACATATCTCTGATCATCCCAATTATGCTTCAAATCCTCAAAATTTTCATCATCAAGCTGGTGAATTTAGACAACATACCAAGTCTCAAAATCCTGCTAACTTTAATTTTCCAGACAATGGCCAGAATCAGCATGGTGGCCAGTCATTCCATCATGATGCGTTGAATAGGAATACTCGTGATGTAGTAGGGCATACGCCTCGTTCATCTTCCACCACTGTTTCTAGAAGTTTATCTTATAATGATGTATGGGGATCTCAGGGGAAACCAGCATCTAAGGAGTTCATTCAAGGGCTTATTGGGATAATTCTTCTTGCATTAAGCTCCCTGAAAATGGAAAAAATTGTGCCAACTGAGGCAAATATAGCTGACTGCATCCGATATGGAGATTTGAGAAACTGCAATACTGATGTAAGAAACGCACTAGATAGTGCGATAGAGCATAATATGGTAGTGAAGCAGAATTTAGGTGCAGTACAATTGTATATTGGCAAAACAGAAAAATTGTGGAAGTGTGTGAACCCTCTAGGTGGGCATCCCAATCAGTACCAAAAAGCTACATGGGACAAGATTTATATTTTTTTGGTTTCTCCAGCTGGTCGTTCTGCGATAATGGCTTCTCATTGCAGATACGAAGCAGCATTGATTCTGAGGAATGAGTGCTTGTTAGAATTTGCCTTGGGCGATGTACTTCATATTTTGAATATGATAATCTCAACAAAGAAATGGATTACTGCTCATCATGTTTCAGGATGGCAGCCAATTAAGATTAAGCTAACAGAAGGTAAAACAGATGCAAGTTCAAGTACTGAACTTGATGATCACACAAGTACCGATTCAGTTTGA 1971 42.21 MNGDAASTAAAAAAPAGSAEPQYATAKTSIWWDIENCQVPKGCDPHAIAQNISSALVKINYCGPVSISAYGDTNRIPSYIQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWMSLVAGGPPLSTAESSQILNGILTSDPPISHNSGFDHNQTSQAIVYKSKDKHIQKSVLSRALSSPVSMQEKNIIILNQPNHMQTKQFKKAPHEFFGNESSVASSNQSTPNMFIENSSHARPDANVSVGSSSSYQTPHMRQNNMQFHPSFRPDNSFSPNSYNHNSFPVPGQPDVSTPNISKRHISDYPYHASSPVPGQPDFSAPNISNLHISDHPNYASNPQNFHHQAGEFRQHTKSQNPANFNFPDNGQNQHGGQSFHHDALNRNTRDVVGHTPRSSSTTVSRSLSYNDVWGSQGKPASKEFIQGLIGIILLALSSLKMEKIVPTEANIADCIRYGDLRNCNTDVRNALDSAIEHNMVVKQNLGAVQLYIGKTEKLWKCVNPLGGHPNQYQKATWDKIYIFLVSPAGRSAIMASHCRYEAALILRNECLLEFALGDVLHILNMIISTKKWITAHHVSGWQPIKIKLTEGKTDASSSTELDDHTSTDSV 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30767641 30776532 + Sed0008463.1 Sed11g1511 730157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1511 656 MobiDBLite consensus disorder prediction 265 305 - -
Sed11g1511 656 MobiDBLite consensus disorder prediction 398 427 - -
Sed11g1511 656 Pfam OST-HTH Associated domain 582 633 IPR025677 -
Sed11g1511 656 PANTHER LIMKAIN B LKAP 19 544 IPR024768 GO:0005777(InterPro)|GO:0010468(InterPro)
Sed11g1511 656 CDD PIN_limkain_b1_N_like 27 151 - -
Sed11g1511 656 Gene3D - 21 170 - -
Sed11g1511 656 Pfam NYN domain 27 163 IPR021139 GO:0004540(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3838 Sed-Chr5:46017027 Sed11g1511 Sed-Chr11:30767641 3.20E-33 dispersed
Sed05g3839 Sed-Chr5:46017027 Sed11g1511 Sed-Chr11:30767641 2.40E-33 dispersed
Sed11g1511 Sed-Chr11:30767641 Sed03g1038 Sed-Chr3:6354707 3.00E-267 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1511 - - - 0.0