Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1514 ATGGCGGGTCCTAAGCATGGTAGCTCTGCTAAAAATTCAAAAGCTGGCGGAAAAAAGGAGGTGAAGAAAGAGACTGGTTTAGGTCTTACTAATAAGAAGGATGATAACTTTGGAGAGTGGTATTCTGAGGTGGTTGTTAGTGGAGAAATGATAGAGTATTATGATATCTCTGGCTGCTATATACTTAGGCCGTGGGCAATGTCTATCTGGGAGACTATGCAAGTGTTTTTTGATGCAGAAATTAAGAAAATGAAAATCAAGAACTGTTATTTTCCACTTTTTGTATCTCCTGCCGTTTTACAAAGAGAGAAAGATCATATAGAAGGTTTTGCTCCTGAGGTTGCATGGGTGACCAAATCTGGAGAGTCTGACTTGGAAGTGCCGATTGCAATTCGCCCTACAAGTGAGACTGTGATGTATCCATACTATTCTAAGTGGATCAGGGGTCATCGTGACTTGCCTTTGAAACTGAACCAGTGGTGCAATGTTGTGAGATGGGAGTTCAGCCATCCCACACCATTTATTAGGAGTCGTGAGTTCCTTTGGCAAGAAGGGCACACAGCTTTTGCTACCAAGGATGAAGCAGATACAGAGGTTCTTGCGATATTGGAACTTTATAGGCGCATATATGAAGAATACCTAGCCATTCCTGTTATCAAGGGCAAGAAGAGTGAGATGGAGAAGTTCGCTGGTGGCCTTTACACCACAAGTGTTGAGGCATTTATACCAAACACAGGTCGTGGAATTCAGGGTGCAACTTCACATTGCTTGGGTCAAAATTTTGCCAAAATGTTTGAAATTAACTTTGAAAACGAAAAGGGGGAGAAAGCCATGGTTTGGCAAAATTCATGGGGTTACAGTACTAGAACGATTGGTGTTATGGTTATGGTCCACGGGGATGACAAGGGATTGGTGCTGCCTCCTAAAGTTGCTTCAGTTCAAGTTGTTATAGTTCCTGTGCCTTACAAAGATGCAGATACTCGAGGAATTTTCGATGCTTGTTCTGCCACTTTGGAAACGTTGTCCGAAGCAGGAATTCGTGCCGAGGTAGACTCTAGGGATAACTACTCTCCTGGATGGAAGTATTCTCACTGGGAAATGAAAGGTGTTCCACTCAGGATTGAAATTGGGCCCAAGGACTTGGCAAACAATCAGGTATGTGCTGTTCGCCGCGATAATTCGGCGAAGAAGGACCTACCCAGAGCCTCCTTGGTTGAAGAAGTGAAAGAATTGCTAGAAAGTATTCAACAAGGCCTGTTTGACGCAGCAAAATTAAAACGTGACTCGTGCATTCAGGTTATTAATACTTGGGAAGAGTTTACTGAAGCACTCGGTCAAAAGAAAATGGTATTAGCTCCATGGTGCGACGAAAAGGAAGTCGAGAAGGACGTGAAAACAAAGACGAAGGGGGAGATGGGAGCAGCGAAAACCTTTTGTTCCCCGTTCGAGCAGCCCGCACTTCCAGAAGGTACCAAATGTTTTGCATCTGGGAAGCCTGCAAAGAAATGGAGCTATTGGGGCCGAAGCTACTAA 1533 44.03 MAGPKHGSSAKNSKAGGKKEVKKETGLGLTNKKDDNFGEWYSEVVVSGEMIEYYDISGCYILRPWAMSIWETMQVFFDAEIKKMKIKNCYFPLFVSPAVLQREKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSHPTPFIRSREFLWQEGHTAFATKDEADTEVLAILELYRRIYEEYLAIPVIKGKKSEMEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKAMVWQNSWGYSTRTIGVMVMVHGDDKGLVLPPKVASVQVVIVPVPYKDADTRGIFDACSATLETLSEAGIRAEVDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANNQVCAVRRDNSAKKDLPRASLVEEVKELLESIQQGLFDAAKLKRDSCIQVINTWEEFTEALGQKKMVLAPWCDEKEVEKDVKTKTKGEMGAAKTFCSPFEQPALPEGTKCFASGKPAKKWSYWGRSY 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30791201 30801521 + Sed0015133.1 Sed11g1514 730160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1514 510 Gene3D Bira Bifunctional Protein; Domain 2 30 307 IPR045864 -
Sed11g1514 510 SUPERFAMILY Class II aaRS ABD-related 302 428 - -
Sed11g1514 510 PANTHER PROLYL-TRNA SYNTHETASE 11 510 IPR004499 GO:0004827(PANTHER)|GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0005737(InterPro)|GO:0006433(PANTHER)|GO:0006433(InterPro)|GO:0017101(PANTHER)
Sed11g1514 510 NCBIfam proline--tRNA ligase 31 510 IPR004499 GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro)
Sed11g1514 510 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 127 295 IPR002314 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Sed11g1514 510 PRINTS Prolyl-tRNA synthetase signature 88 106 IPR002316 GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro)
Sed11g1514 510 PRINTS Prolyl-tRNA synthetase signature 129 140 IPR002316 GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro)
Sed11g1514 510 PRINTS Prolyl-tRNA synthetase signature 159 167 IPR002316 GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro)
Sed11g1514 510 PRINTS Prolyl-tRNA synthetase signature 169 180 IPR002316 GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro)
Sed11g1514 510 FunFam Bifunctional glutamate/proline--tRNA ligase 29 307 - -
Sed11g1514 510 SUPERFAMILY C-terminal domain of ProRS 432 510 IPR017449 GO:0000166(InterPro)|GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro)
Sed11g1514 510 CDD ProRS_core_arch_euk 36 297 IPR033721 -
Sed11g1514 510 Gene3D - 308 428 IPR036621 -
Sed11g1514 510 SMART ProRS_C_1_2 437 510 IPR016061 GO:0000166(InterPro)|GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro)
Sed11g1514 510 Pfam Anticodon binding domain 314 411 IPR004154 -
Sed11g1514 510 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 69 307 IPR006195 -
Sed11g1514 510 Hamap Proline--tRNA ligase [proS]. 30 510 IPR004499 GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro)
Sed11g1514 510 Gene3D - 431 510 IPR017449 GO:0000166(InterPro)|GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro)
Sed11g1514 510 SUPERFAMILY Class II aaRS and biotin synthetases 35 301 IPR045864 -
Sed11g1514 510 CDD ProRS_anticodon_zinc 303 510 - -
Sed11g1514 510 FunFam Proline--tRNA ligase, cytoplasmic 431 510 - -
Sed11g1514 510 FunFam bifunctional glutamate/proline--tRNA ligase 308 428 - -
Sed11g1514 510 MobiDBLite consensus disorder prediction 1 25 - -
Sed11g1514 510 Pfam Prolyl-tRNA synthetase, C-terminal 437 510 IPR016061 GO:0000166(InterPro)|GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1514 K01881 - - csv:101211125 981.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0142 Sed-Chr13:925388 Sed11g1514 Sed-Chr11:30791201 3.40E-115 transposed
Sed11g1514 Sed-Chr11:30791201 Sed03g1036 Sed-Chr3:6343054 3.60E-292 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g742 . . Bda05g00086 . Bpe03g00272 . Bma10g01239 . . Cmo18g01292 . . . . Sed11g1514 . . Bhi01g01267 Tan01g0211 Cmetu11g1479 . Hepe07g0133 . . . . . . . . . Cone1ag1180 Cone5ag0884 . . Lsi05g01205 . . . Blo07g00389 . . . . . . . . . . . Cma18g01263 . Car18g01173 Cpe09g00073 . . . . . . . . Cla05g00903 Cam05g0987 Cec05g0993 Cco05g0991 Clacu05g0975 Cmu05g0932 Cre05g1017 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002719 1 6 2 2 2 2 2 2 2 2 2 2 2 1 3 1 2 2 2 2 1 1 1 1 1 2 1 2 4 1 57