Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1528 | ATGAATGGGAAGGTTGAATTTGAAGTTGAGAGTAGGACTGGTGATCCTATGAGTATCTCTTCAAGCTGGCAATTTGCTGCTGGTAATCTCACTAATGAGACGATGGGATTCGTTTCGACCGGGAATCCCTCGGTTGTTAGCAATGGCAATGGGGATATGGGTGTTTCTTCTTGTCCATCAACTTCAATCTCTAACTTATTTACTCCAACCCTTTTGAACCATCATACCGACTCGCAAAACTCGGGGTTTTGCAGCACTTTTAATGAACAAAATGGCTTAGCTACCTCTAATAGGACTGTAGTTGATGGAGAGGATCTGAATTCTTTGAGATCTAGTAGTGATAGAATGTTTGGTGTGGATTGGAACCAACAAAATCCATGGATGAAAGGAGTTTTCTCAGCAAATGTTCCTGGAATGTTTCCAGCTAATTTATCTCAACTGCCAGCTGATTCGGCATTCATAGAACGTGCAGCTCGGTTCTCATGCTTCAATGGCGGAGTTCTTGAGGCTCCACCTGCTGGTCCATTTGGTATTTCAGATTCTTTAGGCATTCATCCTAGGGGTGCATTTGGAAGGCAAGATGTTATTCCCAGAAGTGGAACTTCCAAAGATGTTTCTTTGCCCATGGAGCTTGAGGCAAAAGAAAAGAGTCCACCAAAAAGTGAGAAAGAAAGTGAGATGTCTCAAGACAGGGCAAAACAAGGTTTTGTTCGTGAGTCTGGTAATGAATCTGACGAAGCTCGGAATAGTGACGGTCAAGGTGAGCGATGCGTGTTGAGAGACACTATTGCAGAACCATCTGGGGAGGGACTTTGCTTCAAGAAAAGGAAAAGGGGTGAGCAGAATGTCGGACTCGGACAAGTTAAAGAATCCCCACAACAAGTTAACGAAACTACGAAGAATGGTGCATTAAATCAGCAGAAGGGAGATCAAAAACCAAGTTCTACTGCTAACAAGCCTGCTGGGAAGCAGGGAAAACAAGATTCTCAACCATCAGATGCTGCTAAAGAAGATTATATTCATATTAGAGCTCGAAGAGGCCAGGCAACAAACAGCCATAGTCTTGCTGAAAGGGTAAGAAGAGAGAAGATAAGTGAAAGAATGAGGCTCCTTCAAGACCTTGTGCCTGGGTGCAGTAAGGTGACTGGCAAAGCCGTAATGCTTGATGAAATCATTAACTATGTACAGTCGCTGCAACGGCAAGTTGAGTTTTTGTCAATGAAACTTGCAACAGTTAATCCCAGGATGGATTTTAACATCGAAGAGCTCCTCACTAAAGAACTTCTTCAATCAAAGGCTGGTCCATCCTTATTCGGTTTTCCTCCCAATCTGCCTACGCCTTACCTCCCGCAACACCCGTCTCACCTCGGACTCATTCCACCTTGTCTTCCTAACATGGGGAACGCTCCAGACATACTAAGAAGAACAATCAATTCCCAGCTGACATCACTTGTTGGTGGATTCAAGGAGCCTGTTCAGCTACCAAATGTGTGGGAGAATGAGCTTCACAGTGGTGTTCCAATGAACTTTGATGTTGCTGCTTCCTCTAGTGGCCAAGATGTTGAAGGTTCTACTCCACAATGCAACACAAGAGCAGAACTTTAA | 1605 | 44.11 | MNGKVEFEVESRTGDPMSISSSWQFAAGNLTNETMGFVSTGNPSVVSNGNGDMGVSSCPSTSISNLFTPTLLNHHTDSQNSGFCSTFNEQNGLATSNRTVVDGEDLNSLRSSSDRMFGVDWNQQNPWMKGVFSANVPGMFPANLSQLPADSAFIERAARFSCFNGGVLEAPPAGPFGISDSLGIHPRGAFGRQDVIPRSGTSKDVSLPMELEAKEKSPPKSEKESEMSQDRAKQGFVRESGNESDEARNSDGQGERCVLRDTIAEPSGEGLCFKKRKRGEQNVGLGQVKESPQQVNETTKNGALNQQKGDQKPSSTANKPAGKQGKQDSQPSDAAKEDYIHIRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNIEELLTKELLQSKAGPSLFGFPPNLPTPYLPQHPSHLGLIPPCLPNMGNAPDILRRTINSQLTSLVGGFKEPVQLPNVWENELHSGVPMNFDVAASSSGQDVEGSTPQCNTRAEL | 534 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30857573 | 30860611 | - | Sed0000734.1 | Sed11g1528 | 730174 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1528 | 534 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 348 | 398 | IPR011598 | GO:0046983(InterPro) | |
Sed11g1528 | 534 | MobiDBLite | consensus disorder prediction | 189 | 257 | - | - | |
Sed11g1528 | 534 | SMART | finulus | 354 | 404 | IPR011598 | GO:0046983(InterPro) | |
Sed11g1528 | 534 | MobiDBLite | consensus disorder prediction | 515 | 534 | - | - | |
Sed11g1528 | 534 | CDD | bHLH_AtBPE_like | 338 | 423 | - | - | |
Sed11g1528 | 534 | Gene3D | - | 345 | 418 | IPR036638 | GO:0046983(InterPro) | |
Sed11g1528 | 534 | MobiDBLite | consensus disorder prediction | 208 | 255 | - | - | |
Sed11g1528 | 534 | MobiDBLite | consensus disorder prediction | 286 | 329 | - | - | |
Sed11g1528 | 534 | FunFam | Basic helix-loop-helix transcription factor | 345 | 417 | - | - | |
Sed11g1528 | 534 | Pfam | Helix-loop-helix DNA-binding domain | 351 | 399 | IPR011598 | GO:0046983(InterPro) | |
Sed11g1528 | 534 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 346 | 417 | IPR036638 | GO:0046983(InterPro) | |
Sed11g1528 | 534 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 145 | 441 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Sed11g1528 | 534 | MobiDBLite | consensus disorder prediction | 283 | 334 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g2312 | Sed-Chr5:35584524 | Sed11g1528 | Sed-Chr11:30857573 | 1.60E-46 | dispersed | |
Sed05g2313 | Sed-Chr5:35584524 | Sed11g1528 | Sed-Chr11:30857573 | 2.70E-44 | dispersed | |
Sed06g1820 | Sed-Chr6:42657790 | Sed11g1528 | Sed-Chr11:30857573 | 4.70E-72 | dispersed | |
Sed06g1821 | Sed-Chr6:42657790 | Sed11g1528 | Sed-Chr11:30857573 | 4.70E-72 | dispersed | |
Sed08g0365 | Sed-Chr8:2197076 | Sed11g1528 | Sed-Chr11:30857573 | 2.50E-28 | dispersed | |
Sed11g1528 | Sed-Chr11:30857573 | Sed12g0702 | Sed-Chr12:4204407 | 6.30E-45 | dispersed | |
Sed11g1528 | Sed-Chr11:30857573 | Sed03g1030 | Sed-Chr3:6315514 | 5.70E-240 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40002 | PF00010 | HLH | 6.60E-06 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1528 | - | - | - | 0.0 |