Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1528 ATGAATGGGAAGGTTGAATTTGAAGTTGAGAGTAGGACTGGTGATCCTATGAGTATCTCTTCAAGCTGGCAATTTGCTGCTGGTAATCTCACTAATGAGACGATGGGATTCGTTTCGACCGGGAATCCCTCGGTTGTTAGCAATGGCAATGGGGATATGGGTGTTTCTTCTTGTCCATCAACTTCAATCTCTAACTTATTTACTCCAACCCTTTTGAACCATCATACCGACTCGCAAAACTCGGGGTTTTGCAGCACTTTTAATGAACAAAATGGCTTAGCTACCTCTAATAGGACTGTAGTTGATGGAGAGGATCTGAATTCTTTGAGATCTAGTAGTGATAGAATGTTTGGTGTGGATTGGAACCAACAAAATCCATGGATGAAAGGAGTTTTCTCAGCAAATGTTCCTGGAATGTTTCCAGCTAATTTATCTCAACTGCCAGCTGATTCGGCATTCATAGAACGTGCAGCTCGGTTCTCATGCTTCAATGGCGGAGTTCTTGAGGCTCCACCTGCTGGTCCATTTGGTATTTCAGATTCTTTAGGCATTCATCCTAGGGGTGCATTTGGAAGGCAAGATGTTATTCCCAGAAGTGGAACTTCCAAAGATGTTTCTTTGCCCATGGAGCTTGAGGCAAAAGAAAAGAGTCCACCAAAAAGTGAGAAAGAAAGTGAGATGTCTCAAGACAGGGCAAAACAAGGTTTTGTTCGTGAGTCTGGTAATGAATCTGACGAAGCTCGGAATAGTGACGGTCAAGGTGAGCGATGCGTGTTGAGAGACACTATTGCAGAACCATCTGGGGAGGGACTTTGCTTCAAGAAAAGGAAAAGGGGTGAGCAGAATGTCGGACTCGGACAAGTTAAAGAATCCCCACAACAAGTTAACGAAACTACGAAGAATGGTGCATTAAATCAGCAGAAGGGAGATCAAAAACCAAGTTCTACTGCTAACAAGCCTGCTGGGAAGCAGGGAAAACAAGATTCTCAACCATCAGATGCTGCTAAAGAAGATTATATTCATATTAGAGCTCGAAGAGGCCAGGCAACAAACAGCCATAGTCTTGCTGAAAGGGTAAGAAGAGAGAAGATAAGTGAAAGAATGAGGCTCCTTCAAGACCTTGTGCCTGGGTGCAGTAAGGTGACTGGCAAAGCCGTAATGCTTGATGAAATCATTAACTATGTACAGTCGCTGCAACGGCAAGTTGAGTTTTTGTCAATGAAACTTGCAACAGTTAATCCCAGGATGGATTTTAACATCGAAGAGCTCCTCACTAAAGAACTTCTTCAATCAAAGGCTGGTCCATCCTTATTCGGTTTTCCTCCCAATCTGCCTACGCCTTACCTCCCGCAACACCCGTCTCACCTCGGACTCATTCCACCTTGTCTTCCTAACATGGGGAACGCTCCAGACATACTAAGAAGAACAATCAATTCCCAGCTGACATCACTTGTTGGTGGATTCAAGGAGCCTGTTCAGCTACCAAATGTGTGGGAGAATGAGCTTCACAGTGGTGTTCCAATGAACTTTGATGTTGCTGCTTCCTCTAGTGGCCAAGATGTTGAAGGTTCTACTCCACAATGCAACACAAGAGCAGAACTTTAA 1605 44.11 MNGKVEFEVESRTGDPMSISSSWQFAAGNLTNETMGFVSTGNPSVVSNGNGDMGVSSCPSTSISNLFTPTLLNHHTDSQNSGFCSTFNEQNGLATSNRTVVDGEDLNSLRSSSDRMFGVDWNQQNPWMKGVFSANVPGMFPANLSQLPADSAFIERAARFSCFNGGVLEAPPAGPFGISDSLGIHPRGAFGRQDVIPRSGTSKDVSLPMELEAKEKSPPKSEKESEMSQDRAKQGFVRESGNESDEARNSDGQGERCVLRDTIAEPSGEGLCFKKRKRGEQNVGLGQVKESPQQVNETTKNGALNQQKGDQKPSSTANKPAGKQGKQDSQPSDAAKEDYIHIRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNIEELLTKELLQSKAGPSLFGFPPNLPTPYLPQHPSHLGLIPPCLPNMGNAPDILRRTINSQLTSLVGGFKEPVQLPNVWENELHSGVPMNFDVAASSSGQDVEGSTPQCNTRAEL 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30857573 30860611 - Sed0000734.1 Sed11g1528 730174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1528 534 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 398 IPR011598 GO:0046983(InterPro)
Sed11g1528 534 MobiDBLite consensus disorder prediction 189 257 - -
Sed11g1528 534 SMART finulus 354 404 IPR011598 GO:0046983(InterPro)
Sed11g1528 534 MobiDBLite consensus disorder prediction 515 534 - -
Sed11g1528 534 CDD bHLH_AtBPE_like 338 423 - -
Sed11g1528 534 Gene3D - 345 418 IPR036638 GO:0046983(InterPro)
Sed11g1528 534 MobiDBLite consensus disorder prediction 208 255 - -
Sed11g1528 534 MobiDBLite consensus disorder prediction 286 329 - -
Sed11g1528 534 FunFam Basic helix-loop-helix transcription factor 345 417 - -
Sed11g1528 534 Pfam Helix-loop-helix DNA-binding domain 351 399 IPR011598 GO:0046983(InterPro)
Sed11g1528 534 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 417 IPR036638 GO:0046983(InterPro)
Sed11g1528 534 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 145 441 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed11g1528 534 MobiDBLite consensus disorder prediction 283 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2312 Sed-Chr5:35584524 Sed11g1528 Sed-Chr11:30857573 1.60E-46 dispersed
Sed05g2313 Sed-Chr5:35584524 Sed11g1528 Sed-Chr11:30857573 2.70E-44 dispersed
Sed06g1820 Sed-Chr6:42657790 Sed11g1528 Sed-Chr11:30857573 4.70E-72 dispersed
Sed06g1821 Sed-Chr6:42657790 Sed11g1528 Sed-Chr11:30857573 4.70E-72 dispersed
Sed08g0365 Sed-Chr8:2197076 Sed11g1528 Sed-Chr11:30857573 2.50E-28 dispersed
Sed11g1528 Sed-Chr11:30857573 Sed12g0702 Sed-Chr12:4204407 6.30E-45 dispersed
Sed11g1528 Sed-Chr11:30857573 Sed03g1030 Sed-Chr3:6315514 5.70E-240 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40002 PF00010 HLH 6.60E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1528 - - - 0.0