Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1536 ATGGATATCAAGAGAGATTATAGGTTACTGTCTTTTTTGGCTCTGCTTTGGATATGGGCTTCTCTAATTGAGGCTTCAGATTTGAACCCTGAAGTTCAAGCTTTGATGGGGATCAAAGCTGCTTTGAAGGATACTCATTCTGTTCTGAATTGGGATGAAAATGCTGTGGATCCATGTACTTGGAATTTGATCACTTGCTCCCTTGATAAACTTGTTATTGGCATAGGAGGTCCAAGCCAAAACTTTTCTGGTACACTTTCACCAAGTGTTGGAAATTTGACAAACCTCCAATTTTTGCTTCTTCAGAATAACTATATATCAGGAAAAATTCCCAAGGAGATTAGCAAAATTCCTAAACTTCACACACTTGATCTTTCAAACAACTCGTTATCTGGTGAAATTCCCAGCTCTTTCTCCAGTTTGAAAAATCTCCAATACCTGAGACTCAACAATAACAACATCTCTGGGACAATTCCATCAACAGTGGCTAACATGACACAACTTAACTTGCTGGACCTGTCCTATAATAATTTGAGCGGTCCTGTGCCCAGATTACTGGCTAAGACATTTAACTTTACTGGAAACTCTTTAATTTGTGCCCCTGGAACTAAGGATATATGCTATGGAGCCATTCCATTGCCAGTTTCTTTCCCTATTACTAATTCCACATATTCTCAACCTCCTTTACGGCATAAAGGCCAGAGAATTGCCTTAGTCATTGGCCTCAGCTTGGGCTGCATCTGTCTGTTAACTCTCGCATACGGTTACGTTACCTGGCGGAGGCATCGGTGCAACCAGCAAATATTCTTCGAAACAAATGATCGGAACCTCGAAGAACTTAGCCTCGAGAACGTAAAGAGGTTTCAGTTCAGAGAGCTCAGGAATGCCACTCACAATTTCAGCAGCAAAAACTTGATAGGAAAAGGTGGATTTGGAAATGTATACAGAGGATATCTACAAGATGGCACCATTGTAGCTGTCAAGAGACTCAAAGATGGGAATGTTTTGAAAGGAGAGGTCCAGTTTCAGACTGAAGTGAAGATGATAAGCTTGGCAGTGCATAGGAACCTCCTCAAGTTGTACGGTTTTTGCGCGACAAAAAACGAGAGGCTTTTGGTCTATCCGTATATGTCCAATGGCAGTGTTGCTACCCGACTTAAAGCAAAACCAACACTGGATTGGGGAACAAGGAAGAGAATAGCATTAGGAGCTGCTAGGGGATTGCTATACTTACATGAACAGTGTGATCCAAAAATAATTCACAGAGATGTGAAAGCTGCAAATATATTGCTTGATGAATTCTATGAGGCAGTGGTGGGTGATTTTGGGCTGGCAAAGATGTTGGAACACACAGATTCACATGTCACTACAGCAGTGAGGGGAACTGTTGGGCACATGGCACCAGAGTATTTGTCAACTGGCCAGTCCTCAGAGAAAACTGATGTGTTTGGATTTGGAATTCTATTGCTTGAGCTTGTTTCAGGTCAAAGAGCTCTTGAATTTGGAAAAGTGGCTAGCCAAAAGGGTGCAATACTGGACTGGGTAAAGAAGCTACACCAAGAAAAGAAGTTAGAGATGCTAGTAGACAAGGACTTGAAAAGCAACTATGACCCAATAGAGGTTGAAGAAATAGTTAGAGTAGCACTTTTGTGCATCCAACATGTTCCAAGCCAAAGGCCAAAGATGTGTGAAGTGGTAAGGATGCTTGAAGGAGAGGGGCTTGCACACAAATGGGAAGCTTCACAAACAGCAGAACCAAGCAGCAGAGCAGGCAGACCCAATAATAATGAATTCTCCTATTCAGAACCTTGCTCTGATCTTACTGATGATTTTTTATTGTTTGCTCAACCAATTGAGCTCTCAGGACCAAGATAA 1875 41.81 MDIKRDYRLLSFLALLWIWASLIEASDLNPEVQALMGIKAALKDTHSVLNWDENAVDPCTWNLITCSLDKLVIGIGGPSQNFSGTLSPSVGNLTNLQFLLLQNNYISGKIPKEISKIPKLHTLDLSNNSLSGEIPSSFSSLKNLQYLRLNNNNISGTIPSTVANMTQLNLLDLSYNNLSGPVPRLLAKTFNFTGNSLICAPGTKDICYGAIPLPVSFPITNSTYSQPPLRHKGQRIALVIGLSLGCICLLTLAYGYVTWRRHRCNQQIFFETNDRNLEELSLENVKRFQFRELRNATHNFSSKNLIGKGGFGNVYRGYLQDGTIVAVKRLKDGNVLKGEVQFQTEVKMISLAVHRNLLKLYGFCATKNERLLVYPYMSNGSVATRLKAKPTLDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDEFYEAVVGDFGLAKMLEHTDSHVTTAVRGTVGHMAPEYLSTGQSSEKTDVFGFGILLLELVSGQRALEFGKVASQKGAILDWVKKLHQEKKLEMLVDKDLKSNYDPIEVEEIVRVALLCIQHVPSQRPKMCEVVRMLEGEGLAHKWEASQTAEPSSRAGRPNNNEFSYSEPCSDLTDDFLLFAQPIELSGPR 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30973259 30979431 - Sed0020012.1 Sed11g1536 730182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1536 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 624 - -
Sed11g1536 624 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515(InterPro)
Sed11g1536 624 FunFam Somatic embryogenesis receptor-like kinase 1 377 589 - -
Sed11g1536 624 ProSiteProfiles Protein kinase domain profile. 300 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1536 624 SMART serkin_6 300 569 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1536 624 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Sed11g1536 624 FunFam Somatic embryogenesis receptor kinase 1 269 376 - -
Sed11g1536 624 ProSiteProfiles Leucine-rich repeat profile. 119 141 IPR001611 GO:0005515(InterPro)
Sed11g1536 624 PRINTS Leucine-rich repeat signature 165 178 - -
Sed11g1536 624 PRINTS Leucine-rich repeat signature 120 133 - -
Sed11g1536 624 SUPERFAMILY Protein kinase-like (PK-like) 280 570 IPR011009 -
Sed11g1536 624 Pfam Protein tyrosine and serine/threonine kinase 303 569 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g1536 624 MobiDBLite consensus disorder prediction 581 602 - -
Sed11g1536 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g1536 624 MobiDBLite consensus disorder prediction 579 602 - -
Sed11g1536 624 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524(InterPro)
Sed11g1536 624 Gene3D Transferase(Phosphotransferase) domain 1 377 588 - -
Sed11g1536 624 FunFam Putative LRR receptor-like serine/threonine-protein kinase 28 209 - -
Sed11g1536 624 SUPERFAMILY L domain-like 45 200 - -
Sed11g1536 624 Gene3D Ribonuclease Inhibitor 28 209 IPR032675 -
Sed11g1536 624 Pfam Leucine Rich Repeat 95 116 IPR001611 GO:0005515(InterPro)
Sed11g1536 624 Gene3D Phosphorylase Kinase; domain 1 269 376 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1536 Sed-Chr11:30973259 Sed11g2070 Sed-Chr11:34677154 1.60E-201 dispersed
Sed13g1069 Sed-Chr13:9280898 Sed11g1536 Sed-Chr11:30973259 9.40E-61 dispersed
Sed11g1536 Sed-Chr11:30973259 Sed11g1537 Sed-Chr11:30974128 2.90E-251 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79914 PF00069 Pkinase 1.10E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1536 - - - 0.0