Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1537 ATGGATATCAAGAGAGATTATAGGTTACTGTCTTTTTTGGCTCTGCTTTGGATATGGGCTTCTCTAATTGAGGCTTCAGATTTGAACCCTGAAGTTCAAGCTTTGATGGGGATCAAAGCTGCTTTGAAGGATACTCATTCTGTTCTGAATTGGGATGAAAATGCTGTGGATCCATGTACTTGGAATTTGATCACTTGCTCCCTTGATAAACTTGTTATTGGCATAGGAGGTCCAAGCCAAAACTTTTCTGGTACACTTTCACCAAGTGTTGGAAATTTGACAAACCTCCAATTTTTGCTTCTTCAGAATAACTATATATCAGGAAAAATTCCCAAGGAGATTAGCAAAATTCCTAAACTTCACACACTTGATCTTTCAAACAACTCGTTATCTGGTGAAATTCCCAGCTCTTTCTCCAGTTTGAAAAATCTCCAATACCTGAGACTCAACAATAACAACATCTCTGGGACAATTCCATCAACAGTGGCTAACATGACACAACTTAACTTGCTGGACCTGTCCTATAATAATTTGAGCGGTCCTGTGCCCAGATTACTGGCTAAGACATTTAACTTTACTGGAAACTCTTTAATTTGTGCCCCTGGAACTAAGGATATATGCTATGGAGCCATTCCATTGCCAGTTTCTTTCCCTATTACTAATTCCACATATTCTCAACCTCCTTTACGGCATAAAGGCCAGAGAATTGCCTTAGTCATTGGCCTCAGCTTGGGCTGCATCTGTCTGTTAACTCTCGCATACGGTTACGTTACCTGGCGGAGGCATCGGTGCAACCAGCAAATATTCTTCGAAACAAATGATCGGAACCTCGAAGAACTTAGCCTCGAGAACGTAAAGAGGTTTCAGTTCAGAGAGCTCAGGAATGCCACTCACAATTTCAGCAGCAAAAACTTGATAGGAAAAGGTGGATTTGGAAATGTATACAGAGGATATCTACAAGATGGCACCATTGTAGCTGTCAAGAGACTCAAAGATGGGAATGTTTTGAAAGGAGAGGTCCAGTTTCAGACTGAAGTGAAGATGATAAGCTTGGCAGTGCATAGGAACCTCCTCAAGTTGTACGGTTTTTGCGCGACAAAAAACGAGAGGCTTTTGGTCTATCCGTATATGTCCAATGGCAGTGTTGCTACCCGACTTAAAGCAAAACCAACACTGGATTGGGGAACAAGGAAGAGAATAGCATTAGGAGCTGCTAGGGGATTGCTATACTTACATGAACAGTGTGATCCAAAAATAATTCACAGAGATGTGAAAGCTGCAAATATATTGCTTGATGAATTCTATGAGGCAGTGGTGGGTGATTTTGGGCTGGCAAAGATGTTGGAACACACAGATTCACATGTCACTACAGCAGTGAGGGGAACTGTTGGGCACATGGCACCAGAGTATTTGTCAACTGGCCAGTCCTCAGAGAAAACTGATGTGTTTGGATTTGGAATTCTATTGCTTGAGCTTGTTTCAGGTCAAAGAGCTCTTGAATTTGGAAAAGTGGCTAGCCAAAAGGGTGCAATACTGGACTGGGTAAGTGATGGGATCGAAATAGATCCCGAAACGAAACTACAAGATAACTCTAGGTGA 1599 41.84 MDIKRDYRLLSFLALLWIWASLIEASDLNPEVQALMGIKAALKDTHSVLNWDENAVDPCTWNLITCSLDKLVIGIGGPSQNFSGTLSPSVGNLTNLQFLLLQNNYISGKIPKEISKIPKLHTLDLSNNSLSGEIPSSFSSLKNLQYLRLNNNNISGTIPSTVANMTQLNLLDLSYNNLSGPVPRLLAKTFNFTGNSLICAPGTKDICYGAIPLPVSFPITNSTYSQPPLRHKGQRIALVIGLSLGCICLLTLAYGYVTWRRHRCNQQIFFETNDRNLEELSLENVKRFQFRELRNATHNFSSKNLIGKGGFGNVYRGYLQDGTIVAVKRLKDGNVLKGEVQFQTEVKMISLAVHRNLLKLYGFCATKNERLLVYPYMSNGSVATRLKAKPTLDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDEFYEAVVGDFGLAKMLEHTDSHVTTAVRGTVGHMAPEYLSTGQSSEKTDVFGFGILLLELVSGQRALEFGKVASQKGAILDWVSDGIEIDPETKLQDNSR 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30974128 30979431 - Sed0020012.2 Sed11g1537 730183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1537 532 ProSiteProfiles Leucine-rich repeat profile. 119 141 IPR001611 GO:0005515(InterPro)
Sed11g1537 532 Pfam Leucine Rich Repeat 95 116 IPR001611 GO:0005515(InterPro)
Sed11g1537 532 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 520 - -
Sed11g1537 532 Gene3D Transferase(Phosphotransferase) domain 1 377 531 - -
Sed11g1537 532 FunFam Somatic embryogenesis receptor-like kinase 1 377 529 - -
Sed11g1537 532 FunFam Putative LRR receptor-like serine/threonine-protein kinase 28 209 - -
Sed11g1537 532 FunFam Somatic embryogenesis receptor kinase 1 269 376 - -
Sed11g1537 532 Gene3D Ribonuclease Inhibitor 28 209 IPR032675 -
Sed11g1537 532 Gene3D Phosphorylase Kinase; domain 1 269 376 - -
Sed11g1537 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g1537 532 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524(InterPro)
Sed11g1537 532 SUPERFAMILY L domain-like 45 201 - -
Sed11g1537 532 ProSiteProfiles Protein kinase domain profile. 300 532 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1537 532 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515(InterPro)
Sed11g1537 532 Pfam Protein kinase domain 301 501 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1537 532 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Sed11g1537 532 PRINTS Leucine-rich repeat signature 165 178 - -
Sed11g1537 532 PRINTS Leucine-rich repeat signature 120 133 - -
Sed11g1537 532 SUPERFAMILY Protein kinase-like (PK-like) 280 507 IPR011009 -
Sed11g1537 532 SMART serkin_6 300 528 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1537 Sed-Chr11:30974128 Sed11g2070 Sed-Chr11:34677154 6.70E-164 dispersed
Sed11g1536 Sed-Chr11:30973259 Sed11g1537 Sed-Chr11:30974128 2.90E-251 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79915 PF00069 Pkinase 1.10E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1537 - - - 0.0