Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1542 ATGGGCCTTGCTGTTCAAGCCACTCGCTTCCATGTTCTTGCTGTCGATGACAGCTTCATCGACCGCAAATTGATCGAACGCCTCCTCCAAACCTCCTCCTATCACGTTACTGCTGTTGATTCCGGTACCAAGGCGTTAGAATTTCTCGGTCTCGTCGATGAATCCACAATCTCTTCCTCAAATCAAGAAGTGGATGTGAATTTGATCATCACCGATTACAGCATGCCTGGAATGACCGGCTACGATCTCCTCAGGAAGATCAAGGAATCCAAATCGTTGAAAGACATACCGGTTGTGATTATGTCATCTGAGAATGTTCCTTCCAGAATCAACAGATGCTTGGAAGAAGGAGCTGAAGAGTTCTTCCTCAAACCTGTTCAATTGTCTGATGTCAGGAAGTTGAGACCTCATTTGATTAAGGAAAAATCTGAAATGAATTGA 441 44.44 MGLAVQATRFHVLAVDDSFIDRKLIERLLQTSSYHVTAVDSGTKALEFLGLVDESTISSSNQEVDVNLIITDYSMPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSEMN 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31030429 31032238 + Sed0020488.1 Sed11g1542 730188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1542 146 Gene3D - 11 145 - -
Sed11g1542 146 SMART REC_2 10 135 IPR001789 GO:0000160(InterPro)
Sed11g1542 146 Pfam Response regulator receiver domain 12 133 IPR001789 GO:0000160(InterPro)
Sed11g1542 146 ProSiteProfiles Response regulatory domain profile. 11 139 IPR001789 GO:0000160(InterPro)
Sed11g1542 146 SUPERFAMILY CheY-like 9 134 IPR011006 -
Sed11g1542 146 CDD REC_typeA_ARR 12 134 - -
Sed11g1542 146 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 143 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1542 Sed-Chr11:31030429 Sed14g0016 Sed-Chr14:229095 3.60E-51 dispersed
Sed11g1542 Sed-Chr11:31030429 Sed03g1011 Sed-Chr3:6211263 4.30E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40003 PF00072 Response_reg 2.10E-22 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1542 K14492 - csv:101210839 240.736