Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1542 | ATGGGCCTTGCTGTTCAAGCCACTCGCTTCCATGTTCTTGCTGTCGATGACAGCTTCATCGACCGCAAATTGATCGAACGCCTCCTCCAAACCTCCTCCTATCACGTTACTGCTGTTGATTCCGGTACCAAGGCGTTAGAATTTCTCGGTCTCGTCGATGAATCCACAATCTCTTCCTCAAATCAAGAAGTGGATGTGAATTTGATCATCACCGATTACAGCATGCCTGGAATGACCGGCTACGATCTCCTCAGGAAGATCAAGGAATCCAAATCGTTGAAAGACATACCGGTTGTGATTATGTCATCTGAGAATGTTCCTTCCAGAATCAACAGATGCTTGGAAGAAGGAGCTGAAGAGTTCTTCCTCAAACCTGTTCAATTGTCTGATGTCAGGAAGTTGAGACCTCATTTGATTAAGGAAAAATCTGAAATGAATTGA | 441 | 44.44 | MGLAVQATRFHVLAVDDSFIDRKLIERLLQTSSYHVTAVDSGTKALEFLGLVDESTISSSNQEVDVNLIITDYSMPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSEMN | 146 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31030429 | 31032238 | + | Sed0020488.1 | Sed11g1542 | 730188 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1542 | 146 | Gene3D | - | 11 | 145 | - | - | |
Sed11g1542 | 146 | SMART | REC_2 | 10 | 135 | IPR001789 | GO:0000160(InterPro) | |
Sed11g1542 | 146 | Pfam | Response regulator receiver domain | 12 | 133 | IPR001789 | GO:0000160(InterPro) | |
Sed11g1542 | 146 | ProSiteProfiles | Response regulatory domain profile. | 11 | 139 | IPR001789 | GO:0000160(InterPro) | |
Sed11g1542 | 146 | SUPERFAMILY | CheY-like | 9 | 134 | IPR011006 | - | |
Sed11g1542 | 146 | CDD | REC_typeA_ARR | 12 | 134 | - | - | |
Sed11g1542 | 146 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 9 | 143 | IPR045279 | GO:0009736(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g1542 | Sed-Chr11:31030429 | Sed14g0016 | Sed-Chr14:229095 | 3.60E-51 | dispersed | |
Sed11g1542 | Sed-Chr11:31030429 | Sed03g1011 | Sed-Chr3:6211263 | 4.30E-65 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40003 | PF00072 | Response_reg | 2.10E-22 | CL0304 | Sed | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1542 | K14492 | - | csv:101210839 | 240.736 |