Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1560 ATGCCGGACGTGCAATCCCTTGTGAATGATTTCGTTATTAAGCTCAAGAAGCGTAAAATTGAGGGTTCATTGGCCACGGCGAAGCATACGGCTGAGTTGCTTCGTTCGGTCCTTTCGCAGCAGCGAATACCCTATACGAACCAGGCGGCTGCTTTGATTGATGCTGTGAAAGTTGTTGGGGAGCAGCTGATTGCTGCCAACCCTGTTGAGCTCGCTGTGGGTAATATTGTGAGGCGTGTTTTGCACATTATTAGGGAGGAGAATCTCTCTCTCACTGCAGCTTCAATTGCTGGGTTGAGCTTAGCAGCAGTTAGTGATGATGAAGATGGCTATGAAAATGACGATATCCCGACCCTCTCAGCCGCTGCTGTTGCAGCTGCTGCAAGAAGCACTTTGCGGCCACCTTCCTTGCAAGCTCTTCTTGAGGATGTTCCTAATCAAGCATCTGCTCATCAAACTGCATCATCTGGGGGTGATTCAGAAGGAAAAAGCACATCTGCTGATAAAAATTCAAAGAGGTTGAAACTCAAGCATGATGTAATTGAAGCTGTTAATGAACTTATTCAGGATATTGCAACTTGTCACGAACAGATTGCTGAGCAAGCAGTAGAGCATATCCACCATAACGAGGTAATATTAACTCTGGGAAGTTCCAGAACAGTATTGGAATTTCTTTGTGCTGCAAAGGAGAAGAAAAGGTCCTTCCGTGTTTTTGTTGCCGAGGGCGCTCCAAGATTTCAGGGCCATCTTCTTGCTAAGGAGCTGGTTACAAGAGGTTTACAGACCACACTTATTACTGATTCTGCAGTTTTTGCCATGATTTCTCGGGTGAATATGGTAATAGTCGGAGCTCATGCTGTCATGGCAAATGGTGGTGTCATGGCGCCTGTCGGATTGAATATGGTGGCCCTTGCAGCTAAAAGGCATGCTGTTCCTTTTGTTGTACTAGCTGGAAGTCACAAGTTATGCCCTTTGTATCCTCACAATCCGGAAGCTCTACTCAATGAACTGAGATCCCCATCAGAGCTACTGGACTTCGGTGAATTTTCAGATTGCATGGACTTTGGAACTAACACTGGTTCTCCTCTTCTCCACGTAGTCAACCCTACATTTGACTATGTGCCACCATCACTTGTTAGTTTATTTATTACTGATACAGGTGGCCATAACTCATCATATATGTATCGGCTTATTGCCGATTATTATTCAGCTGACGATTTGGTAATCAAGCAAAGGCCTTCGACAGGGAGCTAA 1254 45.3 MPDVQSLVNDFVIKLKKRKIEGSLATAKHTAELLRSVLSQQRIPYTNQAAALIDAVKVVGEQLIAANPVELAVGNIVRRVLHIIREENLSLTAASIAGLSLAAVSDDEDGYENDDIPTLSAAAVAAAARSTLRPPSLQALLEDVPNQASAHQTASSGGDSEGKSTSADKNSKRLKLKHDVIEAVNELIQDIATCHEQIAEQAVEHIHHNEVILTLGSSRTVLEFLCAAKEKKRSFRVFVAEGAPRFQGHLLAKELVTRGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVMAPVGLNMVALAAKRHAVPFVVLAGSHKLCPLYPHNPEALLNELRSPSELLDFGEFSDCMDFGTNTGSPLLHVVNPTFDYVPPSLVSLFITDTGGHNSSYMYRLIADYYSADDLVIKQRPSTGS 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31190041 31195329 + Sed0017009.1 Sed11g1560 730206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1560 417 MobiDBLite consensus disorder prediction 144 164 - -
Sed11g1560 417 FunFam translation initiation factor eIF-2B subunit beta 194 402 - -
Sed11g1560 417 Pfam Initiation factor 2 subunit family 19 389 IPR000649 GO:0044237(InterPro)
Sed11g1560 417 MobiDBLite consensus disorder prediction 144 171 - -
Sed11g1560 417 Gene3D - 194 401 IPR042529 -
Sed11g1560 417 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 3 408 IPR051855 GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0006413(PANTHER)
Sed11g1560 417 SUPERFAMILY NagB/RpiA/CoA transferase-like 5 406 IPR037171 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0999 Sed-Chr3:6113805 Sed11g1560 Sed-Chr11:31190041 8.20E-149 dispersed
Sed04g2373 Sed-Chr4:37138985 Sed11g1560 Sed-Chr11:31190041 2.80E-18 dispersed
Sed11g1560 Sed-Chr11:31190041 Sed03g0998 Sed-Chr3:6113805 2.60E-208 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1560 K03754 - csv:101220366 741.495