Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1566 ATGGCGTTCTCTGATAGATCCTCTCGTCAATCGCTGATTCCCAGCTTCCTCTATTCTTCGCCTTCTTCCACTCGCACTCTTCCTCTCAAGAAGATGCTGCAGTCTCCGTCGACGATCGAATCGGTTTCTTCCACTCCGAAGAGCTTCGTGATTCCTGCTCCGGCCGAGCCGTCGAAGAAGATCGAGATGTACTCGCCGGCGTTCTACACCGCGTGTACTTTTGGAGGGATTCTCAGCTGCGGTCTCACGCATATGACTGTTACTCCTCTCGATTTGGTTAAATGCAATATGCAGATTGATCCTGCGAAATACAAAAGCATTTCGTCTGGATTTGGAGTTTTGCTTAAGGAGCAGGGTGTTAAGGGTTTCTTTAGGGGTTGGGTGCCTACCCTCCTTGGCTACAGTGCTCAGGGTGCCTGCAAGTTTGGTTTCTACGAGTTTTTTAAGAAGTATTACTCTGATATTGCTGGGCCTGAGTACGCAGCGAAGTACAAGACCTTGATCTACCTTGCTGGCTCTGCATCTGCTGAGGTGATTGCTGATGTTGCACTTTGCCCTTTCGAAGCTGTGAAGGTTCGAGTTCAAACTCAGCCTGGTTTTGCTAGAGGACTGTCAGATGGACTTCCCAAGTTTGTCAGATCTGAAGGAGCTCTAGGGTTGTACAAGGGAATTGTTCCACTATGGGGACGCCAGATTCCATACACAATGATGAAGTTTGCTTCCTTTGAGACAATAGTTGAGATGATATACAAGTATGCCATTCCCACACCAAAGGACCAATGCACCAAATCTCTCCAGCTTGGTGTTAGTTTTGCTGGTGGATATGTGGCTGGTGTTCTCTGTGCTATCGTGTCTCATCCTGCCGACAATCTTGTGTCCTTCCTCAACAATGCCAAAGGAGCAACTGTTGGGGATGCTGTTAAGAAGCTCGGATTATGGGGTCTTTTCACCCGTGGTCTGCCCCTTCGTATCGTTATGATCGGAACTCTCACTGGTGCCCAGTGGGGTCTTTACGATGCATTCAAAGTATTTGTTGGACTGCCAACTACTGGTGGCGTTGCTCCTGCTGCCCCTGCACCTGCTGAGCTTACAGATGCATGA 1101 48.86 MAFSDRSSRQSLIPSFLYSSPSSTRTLPLKKMLQSPSTIESVSSTPKSFVIPAPAEPSKKIEMYSPAFYTACTFGGILSCGLTHMTVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGVKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGALGLYKGIVPLWGRQIPYTMMKFASFETIVEMIYKYAIPTPKDQCTKSLQLGVSFAGGYVAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGLYDAFKVFVGLPTTGGVAPAAPAPAELTDA 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31211942 31215801 - Sed0027617.1 Sed11g1566 730212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1566 366 ProSiteProfiles Solute carrier (Solcar) repeat profile. 265 344 IPR018108 -
Sed11g1566 366 FunFam Phosphate carrier protein, mitochondrial 67 345 - -
Sed11g1566 366 ProSiteProfiles Solute carrier (Solcar) repeat profile. 164 248 IPR018108 -
Sed11g1566 366 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 48 354 IPR044677 GO:0005315(PANTHER)|GO:0005315(InterPro)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro)
Sed11g1566 366 ProSiteProfiles Solute carrier (Solcar) repeat profile. 67 151 IPR018108 -
Sed11g1566 366 Gene3D Mitochondrial carrier domain 68 345 IPR023395 -
Sed11g1566 366 Pfam Mitochondrial carrier protein 69 154 IPR018108 -
Sed11g1566 366 Pfam Mitochondrial carrier protein 165 251 IPR018108 -
Sed11g1566 366 SUPERFAMILY Mitochondrial carrier 70 340 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0982 Sed-Chr3:6080799 Sed11g1566 Sed-Chr11:31211942 1.80E-75 dispersed
Sed11g1566 Sed-Chr11:31211942 Sed12g0134 Sed-Chr12:749386 1.30E-12 dispersed
Sed08g1540 Sed-Chr8:30270133 Sed11g1566 Sed-Chr11:31211942 6.40E-158 transposed
Sed11g1566 Sed-Chr11:31211942 Sed03g0981 Sed-Chr3:6075427 3.60E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1566 K15102 - csv:101221771 667.537