Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1566 | ATGGCGTTCTCTGATAGATCCTCTCGTCAATCGCTGATTCCCAGCTTCCTCTATTCTTCGCCTTCTTCCACTCGCACTCTTCCTCTCAAGAAGATGCTGCAGTCTCCGTCGACGATCGAATCGGTTTCTTCCACTCCGAAGAGCTTCGTGATTCCTGCTCCGGCCGAGCCGTCGAAGAAGATCGAGATGTACTCGCCGGCGTTCTACACCGCGTGTACTTTTGGAGGGATTCTCAGCTGCGGTCTCACGCATATGACTGTTACTCCTCTCGATTTGGTTAAATGCAATATGCAGATTGATCCTGCGAAATACAAAAGCATTTCGTCTGGATTTGGAGTTTTGCTTAAGGAGCAGGGTGTTAAGGGTTTCTTTAGGGGTTGGGTGCCTACCCTCCTTGGCTACAGTGCTCAGGGTGCCTGCAAGTTTGGTTTCTACGAGTTTTTTAAGAAGTATTACTCTGATATTGCTGGGCCTGAGTACGCAGCGAAGTACAAGACCTTGATCTACCTTGCTGGCTCTGCATCTGCTGAGGTGATTGCTGATGTTGCACTTTGCCCTTTCGAAGCTGTGAAGGTTCGAGTTCAAACTCAGCCTGGTTTTGCTAGAGGACTGTCAGATGGACTTCCCAAGTTTGTCAGATCTGAAGGAGCTCTAGGGTTGTACAAGGGAATTGTTCCACTATGGGGACGCCAGATTCCATACACAATGATGAAGTTTGCTTCCTTTGAGACAATAGTTGAGATGATATACAAGTATGCCATTCCCACACCAAAGGACCAATGCACCAAATCTCTCCAGCTTGGTGTTAGTTTTGCTGGTGGATATGTGGCTGGTGTTCTCTGTGCTATCGTGTCTCATCCTGCCGACAATCTTGTGTCCTTCCTCAACAATGCCAAAGGAGCAACTGTTGGGGATGCTGTTAAGAAGCTCGGATTATGGGGTCTTTTCACCCGTGGTCTGCCCCTTCGTATCGTTATGATCGGAACTCTCACTGGTGCCCAGTGGGGTCTTTACGATGCATTCAAAGTATTTGTTGGACTGCCAACTACTGGTGGCGTTGCTCCTGCTGCCCCTGCACCTGCTGAGCTTACAGATGCATGA | 1101 | 48.86 | MAFSDRSSRQSLIPSFLYSSPSSTRTLPLKKMLQSPSTIESVSSTPKSFVIPAPAEPSKKIEMYSPAFYTACTFGGILSCGLTHMTVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGVKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGALGLYKGIVPLWGRQIPYTMMKFASFETIVEMIYKYAIPTPKDQCTKSLQLGVSFAGGYVAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGLYDAFKVFVGLPTTGGVAPAAPAPAELTDA | 366 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31211942 | 31215801 | - | Sed0027617.1 | Sed11g1566 | 730212 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1566 | 366 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 265 | 344 | IPR018108 | - | |
Sed11g1566 | 366 | FunFam | Phosphate carrier protein, mitochondrial | 67 | 345 | - | - | |
Sed11g1566 | 366 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 164 | 248 | IPR018108 | - | |
Sed11g1566 | 366 | PANTHER | SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED | 48 | 354 | IPR044677 | GO:0005315(PANTHER)|GO:0005315(InterPro)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro) | |
Sed11g1566 | 366 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 67 | 151 | IPR018108 | - | |
Sed11g1566 | 366 | Gene3D | Mitochondrial carrier domain | 68 | 345 | IPR023395 | - | |
Sed11g1566 | 366 | Pfam | Mitochondrial carrier protein | 69 | 154 | IPR018108 | - | |
Sed11g1566 | 366 | Pfam | Mitochondrial carrier protein | 165 | 251 | IPR018108 | - | |
Sed11g1566 | 366 | SUPERFAMILY | Mitochondrial carrier | 70 | 340 | IPR023395 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0982 | Sed-Chr3:6080799 | Sed11g1566 | Sed-Chr11:31211942 | 1.80E-75 | dispersed | |
Sed11g1566 | Sed-Chr11:31211942 | Sed12g0134 | Sed-Chr12:749386 | 1.30E-12 | dispersed | |
Sed08g1540 | Sed-Chr8:30270133 | Sed11g1566 | Sed-Chr11:31211942 | 6.40E-158 | transposed | |
Sed11g1566 | Sed-Chr11:31211942 | Sed03g0981 | Sed-Chr3:6075427 | 3.60E-193 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1566 | K15102 | - | csv:101221771 | 667.537 |