Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1583 ATGAAGGAAGAAGGAGAGTGTTTTCAAGGGTTTCAAGAGCAGCTTCTAATGCAACAATTTCAGCAGCAAAACGGCGACGTTTTTGGAGGAGGTTTGATTTTTCCTGATGTTTCTCCTATGATGTTTCAGCCGCCGTGGGCCGCGGCGACGATCCCGCAAGTCCACCACGACCCGTTTATCGCGCCGCCGCCACCACCGCTGCCGTCTTCGTATGCCAGCTTTTTCAATAGGAGATCAAATGGTTCTCTGCAGTTCCCTTATGATATTGCAAACAATAATCTTGGAATCGGGCAGATGGGGCAGGCGGGGTCTGGGCCATTTGGACTGCAGGCTGAGCTGACCAAGCTGACCGCTCAAGAAATAATGGATGCCAAAGCACTTGCAGCTTCAAAAAGCCATAGTGAAGCTGAGAGAAGAAGAAGGGAAAGAATTAATAATCATCTTGCTAAATTAAGAAGCTTACTCCCAAGCACCACAAAAACAGACAAGGCATCCTTGCTTGCAGAAGTAATCCAACATGTGAAAGAGCTGAAACGACAGACAACATTGATAGCCGAAGTAAGTCCCGTGCCGACCGAGCTCGACGAGCTCTCAGTCGACGTCGACGCATCAGAGGAAGATGGGAAGTTCGTGATAAAAGCATCCCTTTGTTGTGAGGATAGATCTGATCTCTTGCCACAGATCATCAAAACCCTAAAATCCCTCCGCCTGAGAACCCTAAAAGCCGAGATCACGACTCTCGGCGGCCGTGTGAAGAACGTCTTGTTCATCACGGGCGACGACGACTCCTCGGGCGACCAGGAAGAGGCTCAAATCCACCACCAATACAGCATCAGTTCCATTCAGGAAGCCCTAAAGGCCGTGATGGAAAAGGTTTGTAGCGAAGATCAGTCGGCTACGGGCAGCATTAAAAGACAAAGGACCAATAATCACAACATTAATATCATCGAACACAGGTCTTTCTAA 966 48.76 MKEEGECFQGFQEQLLMQQFQQQNGDVFGGGLIFPDVSPMMFQPPWAAATIPQVHHDPFIAPPPPPLPSSYASFFNRRSNGSLQFPYDIANNNLGIGQMGQAGSGPFGLQAELTKLTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIAEVSPVPTELDELSVDVDASEEDGKFVIKASLCCEDRSDLLPQIIKTLKSLRLRTLKAEITTLGGRVKNVLFITGDDDSSGDQEEAQIHHQYSISSIQEALKAVMEKVCSEDQSATGSIKRQRTNNHNINIIEHRSF 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31337122 31340972 + Sed0010186.1 Sed11g1583 730229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1583 321 Pfam Helix-loop-helix DNA-binding domain 131 178 IPR011598 GO:0046983(InterPro)
Sed11g1583 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 183 IPR036638 GO:0046983(InterPro)
Sed11g1583 321 CDD bHLH_AtAIG1_like 123 202 - -
Sed11g1583 321 Gene3D - 123 183 IPR036638 GO:0046983(InterPro)
Sed11g1583 321 PANTHER TRANSCRIPTION FACTOR BHLH30 98 310 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1583 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 177 IPR011598 GO:0046983(InterPro)
Sed11g1583 321 FunFam transcription factor bHLH30 123 186 - -
Sed11g1583 321 SMART finulus 134 183 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1199 Sed-Chr3:7629837 Sed11g1583 Sed-Chr11:31337122 4.90E-124 dispersed
Sed05g3201 Sed-Chr5:41786099 Sed11g1583 Sed-Chr11:31337122 4.10E-31 dispersed
Sed08g2233 Sed-Chr8:36035440 Sed11g1583 Sed-Chr11:31337122 1.80E-29 dispersed
Sed10g0821 Sed-Chr10:5991338 Sed11g1583 Sed-Chr11:31337122 1.70E-14 dispersed
Sed11g1583 Sed-Chr11:31337122 Sed11g2145 Sed-Chr11:35297231 1.90E-25 dispersed
Sed02g0873 Sed-Chr2:46277267 Sed11g1583 Sed-Chr11:31337122 2.10E-42 transposed
Sed07g2054 Sed-Chr7:35700128 Sed11g1583 Sed-Chr11:31337122 8.70E-88 transposed
Sed11g1583 Sed-Chr11:31337122 Sed03g1198 Sed-Chr3:7629837 1.50E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40005 PF00010 HLH 1.50E-12 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1583 - - - 0.0