Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1584 ATGGTGGTGGAGACTAGAGTATTGACGTGGAGGAGGGGGTTCAAGTCCTTACAGGCTCTGGCCGCCCATGGGTTTCTTTTGTCCTTCACGCTTTTACTTGCTCTCAATCTCGACCGGGTCGTTTCCTACTCTTGGTGGATTCTATTTTTGCCTCTATGGCTATTTCATCTAGTTGCAGCAAGAGGCAGATTTTCTCTACCTGCTCCATCAATGCCTCATGACCGATATTGGGCACCGTGGCATGCTCTCATGGCAACACCATTACTTGTTGCTTTCGAAGTGCTTCTTTGTATATATTTAGAGTGTAATAATGTTATAAATTTGAAGATTGTCTTTGTTCCCCTCGTGATATTTGAGCTAGCAATTTTGGTCGACAATATCAGGATGTGTAGAGCCTTACTGCCTGGCGATGAAGAAGAGAACGTTAGCGATGAAGTTATATGGGAAACACTTCCTCACTTCTGGGTTTCGATTTCCATGGTTTTCTTCATCGCTGCAACCCTGTTCACTCTTCTTAAGCTTAGTGGCAATGTAGCTGCTCTGGGCTGGTGGGATTTATTCATAAATTTCTGTATAGCTGAGTGCTTTGCATCTCTTGTTTGCACGAAGTGGTATAATCCTATGATTCACAGGCATTCTCTTGTTAGAGAATCAAGTTCATCGTCGTTGACCATTAGATATCTTGACTGGGATAGAGGTGTGGTGGTTTCCTCTGATGAGGTTCAACCCCAAGTCAGAGTTTGTAACTTGCAGGAAATTGGTGGACACATCATGAAGATTCCTCTTATTGTTTTCCAAATCTTGCTTTTTATGCGCTTGGAGGGAACCCCCAAGAGTGCTTCATATATTCCTTGTCTCGTTGTGTTCTCTCCTCTTTTCTTACTGCAAGGAGTGGGATTTGTATTTGCGGCATATAGGTCAATGGAAAAAATTGTAATTTTACTTGTTGGTGCTCCTACCTCTGTAAGATATCTTGATCTAAGGTCAAAGGCTCGTGAACTGTTAGGGTTCATGCACCATGGATCGAGGTTGCTAGGTTGGTGGTCAATTGACGAAGGTAGTCAAGAGGAGCAAGCTAAACTTTATTCGGCTGGAACTTCTGGGTATGATACTTTCACACCAGAAACTGTAAGGAAAATGACCAAATCCAATCTCGTCGATGAGATATGGAGATTACAAGCTGCATTAAATCAACAGACAGAAGTTACAAAAATGAGCCGGCAGGAGCACGAAAAACTTCTTTATGAGAATATTCTTTGTAGAGTATGCTTTGATGAACCCATTGATATGGTTCTTCTTCCCTGTAGGCATCACATTCTCTGCAGCACTTGCGGTGAGAAATGTAATCGTTGCCCAATATGTCGGGAATCGATCGAAGAACGGCTAGGCGTAAATGATGTTTAG 1404 42.74 MVVETRVLTWRRGFKSLQALAAHGFLLSFTLLLALNLDRVVSYSWWILFLPLWLFHLVAARGRFSLPAPSMPHDRYWAPWHALMATPLLVAFEVLLCIYLECNNVINLKIVFVPLVIFELAILVDNIRMCRALLPGDEEENVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGNVAALGWWDLFINFCIAECFASLVCTKWYNPMIHRHSLVRESSSSSLTIRYLDWDRGVVVSSDEVQPQVRVCNLQEIGGHIMKIPLIVFQILLFMRLEGTPKSASYIPCLVVFSPLFLLQGVGFVFAAYRSMEKIVILLVGAPTSVRYLDLRSKARELLGFMHHGSRLLGWWSIDEGSQEEQAKLYSAGTSGYDTFTPETVRKMTKSNLVDEIWRLQAALNQQTEVTKMSRQEHEKLLYENILCRVCFDEPIDMVLLPCRHHILCSTCGEKCNRCPICRESIEERLGVNDV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31352017 31362497 + Sed0010017.1 Sed11g1584 730230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1584 467 Pfam Transmembrane Fragile-X-F protein 35 295 IPR019396 -
Sed11g1584 467 Pfam Zinc finger, C3HC4 type (RING finger) 418 460 - -
Sed11g1584 467 SUPERFAMILY RING/U-box 410 462 - -
Sed11g1584 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Sed11g1584 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 464 IPR013083 -
Sed11g1584 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 9 467 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0334 Sed-Chr8:2035001 Sed11g1584 Sed-Chr11:31352017 6.10E-169 dispersed
Sed11g1584 Sed-Chr11:31352017 Sed12g2061 Sed-Chr12:31406526 1.80E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1584 - - - 0.0