Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1595 ATGCAAAGTTCCAACTTGAGTTGCATATCTTCAAGTGAAGATGAAGACTCCATTTTCCTTTCCCTTTGTCCTCCAGGCCAACCCCATCAAAACAAACTAAACCCGAATAATATTCATCGTTATCATCATCATCATCATCATCATTATTCTCCTGTCACCGTCGCAATGCACGTTGACCCTCCCGACACCGTCCCGGTCGACGCCCAGTACTGGATCCCTACGCCTGCTCAAATCCTCGTTGGTCCTACCCAGTTCTCCTGCTCTGTTTGCACTAAGACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCAGAGTACAGAAAAGGGCCAGAGTCACTAAGAGGAACAAAGGCAGCAGCTCCTAATTCATCAATGCTTAAACTTCCATGTTATTGCTGTGAAGAGGGCTGCAAAAACAACATAGGGCACCCAAGGGCAAGGCCATTGAAAGACTTTAGGACACTTCAGACCCATTACAAGAGAAAGCATGGGACAAAGCCCTTCAATTGTAGGAAATGTGGGAAGCCCTTTGCAGTCAGAGGGGATTGGAGGACTCATGAGAAGAATTGTGGAAAGATTTGGTTTTGCATTTGTGGCTCTGATTTTAGGCACAAAAGATCCCTTAAAGACCATGTTAGATCCTTTGGGGAGGGTCATGCCCCTCATAAAGTCCAACTTTGTGACCTTCAAGAGGATCATGATAATTGGGTTCATGATTATGATCCTCCTCTATGTTTAAATCAAGCTCAGCCTTGCTCAATTTATCTTTAA 786 44.53 MQSSNLSCISSSEDEDSIFLSLCPPGQPHQNKLNPNNIHRYHHHHHHHYSPVTVAMHVDPPDTVPVDAQYWIPTPAQILVGPTQFSCSVCTKTFNRYNNMQMHMWGHGSEYRKGPESLRGTKAAAPNSSMLKLPCYCCEEGCKNNIGHPRARPLKDFRTLQTHYKRKHGTKPFNCRKCGKPFAVRGDWRTHEKNCGKIWFCICGSDFRHKRSLKDHVRSFGEGHAPHKVQLCDLQEDHDNWVHDYDPPLCLNQAQPCSIYL 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31452639 31455158 - Sed0007417.1 Sed11g1595 730241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1595 261 FunFam Zinc finger protein WIP2 142 224 - -
Sed11g1595 261 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 172 196 - -
Sed11g1595 261 Gene3D Classic Zinc Finger 84 107 - -
Sed11g1595 261 SMART c2h2final6 85 107 IPR013087 -
Sed11g1595 261 SMART c2h2final6 136 168 IPR013087 -
Sed11g1595 261 SMART c2h2final6 173 193 IPR013087 -
Sed11g1595 261 SUPERFAMILY beta-beta-alpha zinc fingers 157 193 IPR036236 -
Sed11g1595 261 SUPERFAMILY beta-beta-alpha zinc fingers 81 108 IPR036236 -
Sed11g1595 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Sed11g1595 261 PANTHER ZINC FINGER PROTEIN WIP2 11 237 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Sed11g1595 261 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Sed11g1595 261 Gene3D Classic Zinc Finger 112 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1595 Sed-Chr11:31452639 Sed12g1232 Sed-Chr12:8757416 2.40E-82 dispersed
Sed11g1595 Sed-Chr11:31452639 Sed03g1195 Sed-Chr3:7546114 3.20E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40006 PF00096 zf-C2H2 0.0082 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1595 - - - 0.0