Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1626 | ATGCAGAGTTTTGAAAACCCAGAACAGCTCTTCGCTCATTCTTCCATCTATCTCCGGGGAGACGACAATGGGCGATTTCACTCGCGGTTTCTTCCTGATATTGAGGAGCTTCAACATGCTGTTGATTTAGCCCCAAGCTCTGTTTTCAGTTCAAAATCGACCCATAACCACAACGGAGCCTTTCCGATCAATCTACCTTATCCGAACGCGGATGTGAGTTCAATGGGAACAGGGCATATAGACTCGGGGCAGCAATTGGTGCGGTTGAAGAGGGTGGCGCCGCCGCAGACGGCGGAGGCGGCGGTGGCAGCTGCGTCATCGTTGGGGAATGGGAGTTTTGAGAACTGGGGCGAGTCAGTCATGGCAGATAATAGCCAGCAGACTGATGATACTTCCACAGATATCGACACTGAAGAAAGAAACCAGTTTCGAGGAGCTTGTCATGGAGCTCTCATGGCGGTGGACTCCATGGATCAATCTAGACCAAAATCTGCAGATCAGAAGACTCTACGTAGGCTTGCTCAGAATCGAGAAGCAGCTAGGAAGAGTCGGCTTAGAAAGAAGGCGTATGTCCAGCAGCTGGAAAACAGTCGGCAGAGGCTTGCGCAGCTGGAGCAGGAGCTTCATCGAGCACGTCAACAGGTGGGCGTTTTTGGGGCTTCTGGAGCAGCTGACCATTGTTTATCAATGGCAGGGAATGGTGCCTTGGCATTTGATCTCGACTATGCACGTTGGCTTGAGGAGCATCAGCGGCTGATCAATGATTTGAGAGTATCTGCAAATTCTCATTTAGGCGAGGATGAATTGCGTTTTCTTGTTGATGGGGTGATGGCACACTATGATGAACTCTTTAGGCTGAAGAGTGTAGGTGCCAAGGCCGACGTTTTCCACATTCTTTCGGGCATGTGGAAGACTCCTGCTGAAAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCGTCTGAAATTCTAAGGATAGTTGGGAACCAATTGGAGCCATTAACAGATCAGCAGTTGATGGGCATATGCAATTTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCACAAGGGATTGAAGCTTTGCAACAATCTCTTGCAGAAACTCTTTCTTCTGCTTCTGGTTGTCCTGCTAGTTCGGGAAATGTTGCTGATTACATGGGCCAAATGGCGATAGCAATGAGCAAATTAACGACGCTTGAGAATTTTCTCCATCAGGCCAATCTTCTGAGGCAGCAAACATTACAGCAGATGCATCGGATATTAACTACACGACAAGCTGCACGAGCACTTCTTGTCATCAGTGATTACATTTCACGTCTTCGAGCTCTTAGTTCTCTGTGGTTGGCACGACCAAAAGAATGA | 1365 | 48.57 | MQSFENPEQLFAHSSIYLRGDDNGRFHSRFLPDIEELQHAVDLAPSSVFSSKSTHNHNGAFPINLPYPNADVSSMGTGHIDSGQQLVRLKRVAPPQTAEAAVAAASSLGNGSFENWGESVMADNSQQTDDTSTDIDTEERNQFRGACHGALMAVDSMDQSRPKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLAQLEQELHRARQQVGVFGASGAADHCLSMAGNGALAFDLDYARWLEEHQRLINDLRVSANSHLGEDELRFLVDGVMAHYDELFRLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSEILRIVGNQLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLAETLSSASGCPASSGNVADYMGQMAIAMSKLTTLENFLHQANLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPKE | 454 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31597841 | 31601817 | - | Sed0012542.1 | Sed11g1626 | 730272 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1626 | 454 | Pfam | Seed dormancy control | 253 | 326 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed11g1626 | 454 | SMART | brlzneu | 164 | 217 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1626 | 454 | Coils | Coil | 187 | 214 | - | - | |
Sed11g1626 | 454 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 171 | 186 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1626 | 454 | ProSiteProfiles | DOG1 domain profile. | 235 | 451 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed11g1626 | 454 | Pfam | bZIP transcription factor | 167 | 208 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1626 | 454 | SUPERFAMILY | Leucine zipper domain | 168 | 213 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1626 | 454 | Gene3D | - | 167 | 218 | - | - | |
Sed11g1626 | 454 | FunFam | BZIP family transcription factor | 167 | 217 | - | - | |
Sed11g1626 | 454 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 123 | 454 | - | - | |
Sed11g1626 | 454 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 166 | 210 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g1626 | Sed-Chr11:31597841 | Sed12g1159 | Sed-Chr12:7691854 | 1.60E-118 | dispersed | |
Sed11g1626 | Sed-Chr11:31597841 | Sed03g1174 | Sed-Chr3:7331470 | 5.80E-193 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40010 | PF14144 | DOG1 | 7.20E-29 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1626 | K14431 | - | csv:101210308 | 726.472 |