Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1626 ATGCAGAGTTTTGAAAACCCAGAACAGCTCTTCGCTCATTCTTCCATCTATCTCCGGGGAGACGACAATGGGCGATTTCACTCGCGGTTTCTTCCTGATATTGAGGAGCTTCAACATGCTGTTGATTTAGCCCCAAGCTCTGTTTTCAGTTCAAAATCGACCCATAACCACAACGGAGCCTTTCCGATCAATCTACCTTATCCGAACGCGGATGTGAGTTCAATGGGAACAGGGCATATAGACTCGGGGCAGCAATTGGTGCGGTTGAAGAGGGTGGCGCCGCCGCAGACGGCGGAGGCGGCGGTGGCAGCTGCGTCATCGTTGGGGAATGGGAGTTTTGAGAACTGGGGCGAGTCAGTCATGGCAGATAATAGCCAGCAGACTGATGATACTTCCACAGATATCGACACTGAAGAAAGAAACCAGTTTCGAGGAGCTTGTCATGGAGCTCTCATGGCGGTGGACTCCATGGATCAATCTAGACCAAAATCTGCAGATCAGAAGACTCTACGTAGGCTTGCTCAGAATCGAGAAGCAGCTAGGAAGAGTCGGCTTAGAAAGAAGGCGTATGTCCAGCAGCTGGAAAACAGTCGGCAGAGGCTTGCGCAGCTGGAGCAGGAGCTTCATCGAGCACGTCAACAGGTGGGCGTTTTTGGGGCTTCTGGAGCAGCTGACCATTGTTTATCAATGGCAGGGAATGGTGCCTTGGCATTTGATCTCGACTATGCACGTTGGCTTGAGGAGCATCAGCGGCTGATCAATGATTTGAGAGTATCTGCAAATTCTCATTTAGGCGAGGATGAATTGCGTTTTCTTGTTGATGGGGTGATGGCACACTATGATGAACTCTTTAGGCTGAAGAGTGTAGGTGCCAAGGCCGACGTTTTCCACATTCTTTCGGGCATGTGGAAGACTCCTGCTGAAAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCGTCTGAAATTCTAAGGATAGTTGGGAACCAATTGGAGCCATTAACAGATCAGCAGTTGATGGGCATATGCAATTTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCACAAGGGATTGAAGCTTTGCAACAATCTCTTGCAGAAACTCTTTCTTCTGCTTCTGGTTGTCCTGCTAGTTCGGGAAATGTTGCTGATTACATGGGCCAAATGGCGATAGCAATGAGCAAATTAACGACGCTTGAGAATTTTCTCCATCAGGCCAATCTTCTGAGGCAGCAAACATTACAGCAGATGCATCGGATATTAACTACACGACAAGCTGCACGAGCACTTCTTGTCATCAGTGATTACATTTCACGTCTTCGAGCTCTTAGTTCTCTGTGGTTGGCACGACCAAAAGAATGA 1365 48.57 MQSFENPEQLFAHSSIYLRGDDNGRFHSRFLPDIEELQHAVDLAPSSVFSSKSTHNHNGAFPINLPYPNADVSSMGTGHIDSGQQLVRLKRVAPPQTAEAAVAAASSLGNGSFENWGESVMADNSQQTDDTSTDIDTEERNQFRGACHGALMAVDSMDQSRPKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLAQLEQELHRARQQVGVFGASGAADHCLSMAGNGALAFDLDYARWLEEHQRLINDLRVSANSHLGEDELRFLVDGVMAHYDELFRLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSEILRIVGNQLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLAETLSSASGCPASSGNVADYMGQMAIAMSKLTTLENFLHQANLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPKE 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31597841 31601817 - Sed0012542.1 Sed11g1626 730272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1626 454 Pfam Seed dormancy control 253 326 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed11g1626 454 SMART brlzneu 164 217 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1626 454 Coils Coil 187 214 - -
Sed11g1626 454 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 171 186 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1626 454 ProSiteProfiles DOG1 domain profile. 235 451 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed11g1626 454 Pfam bZIP transcription factor 167 208 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1626 454 SUPERFAMILY Leucine zipper domain 168 213 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1626 454 Gene3D - 167 218 - -
Sed11g1626 454 FunFam BZIP family transcription factor 167 217 - -
Sed11g1626 454 PANTHER TRANSCRIPTION FACTOR TGA9 123 454 - -
Sed11g1626 454 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 166 210 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1626 Sed-Chr11:31597841 Sed12g1159 Sed-Chr12:7691854 1.60E-118 dispersed
Sed11g1626 Sed-Chr11:31597841 Sed03g1174 Sed-Chr3:7331470 5.80E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40010 PF14144 DOG1 7.20E-29 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1626 K14431 - csv:101210308 726.472