Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1648 ATGCACAAGAGCGGCACATCTGCGACTAATTCTATTGCTGCTACGACGGCAACTATGCCGTCGCCGTCGCAGCACAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAACTCCTCGATCTTTGCTTCAAAGCAATCTGTGCCGGTCTCTCTTCCGTTAACTCTCTACGGCGACTCCTCACGCGCGGACTTGAAATCCACAACCAACCACCTCTACCAAACCAGAGTGGTTCAAGATCACCAAGAAATGGTGAATCGCCATAGCCTCTGCCTCACTCACCTCCGTGAAGCGACCGAAGAAGCCGATGCTCTTCGACAAGAAAACAATCACCTCCGAAGTATCAACCACGAGCTTAGCAAACACCTCAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCCTCCGTCGTTTAATTTTGTGGAGGGATTCCGCGGACTCAGTGTCGCGGAGAAGGGATCGAGCAGTTCGGCATGGGAAGATGTTTCCGATGAGAGTCCGACCAGCGTAATGGAGGGTGGAAGGGTAGAGGGCGTTGAAGTGGAGAGGTTTTCGCTCCCAAAAAGCATCTCCGTTAGGTCCAATGGATACTTGAAGATGACTCAAGGCGGTACCGGCCAGGGCGGAAAGGTCCGCGCCTCATCTCGCCCCAGAACTGCGAGTCCCGTCAAGGTTACGCAAAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAACTTGAGGTTTACAACCAGGGCATGTTCAAAACAGAGCTGTGCAACAAATGGCAGGAAACGGGCAGCTGCCCATATGGAGAACACTGCCAATTCGCCCATGGAATCGAGGAGCTCCGCCCTGTGATCCGCCACCCCCGCTACAAGACCGAGGTCTGTCGGATGGTCCTCGCCGGAGTCGTGTGCCCGTACGGTCACCGCTGCCACTTCCGCCACGCACTCACTGACCAGGAGAGGCTCATGGTGCCACCCAAGCCCACCTGCAGGACCAATGCCCCCAAGCTGGACAGGTGA 1044 54.89 MHKSGTSATNSIAATTATMPSPSQHKSQLQTNDVYASLYNSSIFASKQSVPVSLPLTLYGDSSRADLKSTTNHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENNHLRSINHELSKHLSLLIHASVQKQYGSSDQAPPSFNFVEGFRGLSVAEKGSSSSAWEDVSDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMTQGGTGQGGKVRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGEHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMVPPKPTCRTNAPKLDR 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31762985 31766020 - Sed0018266.1 Sed11g1648 730294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1648 347 PANTHER CCCH ZINC FINGER/TIS11-RELATED 32 328 IPR045877 GO:0003729(InterPro)
Sed11g1648 347 FunFam zinc finger CCCH domain-containing protein 15-like 253 292 - -
Sed11g1648 347 FunFam Zinc finger protein 36, C3H1 type-like 1 293 329 - -
Sed11g1648 347 ProSiteProfiles Zinc finger C3H1-type profile. 259 287 IPR000571 GO:0046872(InterPro)
Sed11g1648 347 SUPERFAMILY CCCH zinc finger 256 291 IPR036855 GO:0046872(InterPro)
Sed11g1648 347 Gene3D - 253 292 - -
Sed11g1648 347 Gene3D - 293 329 - -
Sed11g1648 347 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 285 IPR000571 GO:0046872(InterPro)
Sed11g1648 347 Coils Coil 97 117 - -
Sed11g1648 347 MobiDBLite consensus disorder prediction 207 228 - -
Sed11g1648 347 MobiDBLite consensus disorder prediction 1 28 - -
Sed11g1648 347 ProSiteProfiles Zinc finger C3H1-type profile. 297 325 IPR000571 GO:0046872(InterPro)
Sed11g1648 347 SMART c3hfinal6 259 286 IPR000571 GO:0046872(InterPro)
Sed11g1648 347 SMART c3hfinal6 297 324 IPR000571 GO:0046872(InterPro)
Sed11g1648 347 SUPERFAMILY CCCH zinc finger 293 327 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g2278 Sed-Chr11:35951939 Sed11g1648 Sed-Chr11:31762985 3.70E-33 transposed
Sed11g1648 Sed-Chr11:31762985 Sed03g1144 Sed-Chr3:7137150 1.50E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40011 PF00642 zf-CCCH 1.40E-11 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1648 K18753 - csv:101203274 582.793