Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1648 | ATGCACAAGAGCGGCACATCTGCGACTAATTCTATTGCTGCTACGACGGCAACTATGCCGTCGCCGTCGCAGCACAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAACTCCTCGATCTTTGCTTCAAAGCAATCTGTGCCGGTCTCTCTTCCGTTAACTCTCTACGGCGACTCCTCACGCGCGGACTTGAAATCCACAACCAACCACCTCTACCAAACCAGAGTGGTTCAAGATCACCAAGAAATGGTGAATCGCCATAGCCTCTGCCTCACTCACCTCCGTGAAGCGACCGAAGAAGCCGATGCTCTTCGACAAGAAAACAATCACCTCCGAAGTATCAACCACGAGCTTAGCAAACACCTCAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCCTCCGTCGTTTAATTTTGTGGAGGGATTCCGCGGACTCAGTGTCGCGGAGAAGGGATCGAGCAGTTCGGCATGGGAAGATGTTTCCGATGAGAGTCCGACCAGCGTAATGGAGGGTGGAAGGGTAGAGGGCGTTGAAGTGGAGAGGTTTTCGCTCCCAAAAAGCATCTCCGTTAGGTCCAATGGATACTTGAAGATGACTCAAGGCGGTACCGGCCAGGGCGGAAAGGTCCGCGCCTCATCTCGCCCCAGAACTGCGAGTCCCGTCAAGGTTACGCAAAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAACTTGAGGTTTACAACCAGGGCATGTTCAAAACAGAGCTGTGCAACAAATGGCAGGAAACGGGCAGCTGCCCATATGGAGAACACTGCCAATTCGCCCATGGAATCGAGGAGCTCCGCCCTGTGATCCGCCACCCCCGCTACAAGACCGAGGTCTGTCGGATGGTCCTCGCCGGAGTCGTGTGCCCGTACGGTCACCGCTGCCACTTCCGCCACGCACTCACTGACCAGGAGAGGCTCATGGTGCCACCCAAGCCCACCTGCAGGACCAATGCCCCCAAGCTGGACAGGTGA | 1044 | 54.89 | MHKSGTSATNSIAATTATMPSPSQHKSQLQTNDVYASLYNSSIFASKQSVPVSLPLTLYGDSSRADLKSTTNHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENNHLRSINHELSKHLSLLIHASVQKQYGSSDQAPPSFNFVEGFRGLSVAEKGSSSSAWEDVSDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMTQGGTGQGGKVRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGEHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMVPPKPTCRTNAPKLDR | 347 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31762985 | 31766020 | - | Sed0018266.1 | Sed11g1648 | 730294 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1648 | 347 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 32 | 328 | IPR045877 | GO:0003729(InterPro) | |
Sed11g1648 | 347 | FunFam | zinc finger CCCH domain-containing protein 15-like | 253 | 292 | - | - | |
Sed11g1648 | 347 | FunFam | Zinc finger protein 36, C3H1 type-like 1 | 293 | 329 | - | - | |
Sed11g1648 | 347 | ProSiteProfiles | Zinc finger C3H1-type profile. | 259 | 287 | IPR000571 | GO:0046872(InterPro) | |
Sed11g1648 | 347 | SUPERFAMILY | CCCH zinc finger | 256 | 291 | IPR036855 | GO:0046872(InterPro) | |
Sed11g1648 | 347 | Gene3D | - | 253 | 292 | - | - | |
Sed11g1648 | 347 | Gene3D | - | 293 | 329 | - | - | |
Sed11g1648 | 347 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 260 | 285 | IPR000571 | GO:0046872(InterPro) | |
Sed11g1648 | 347 | Coils | Coil | 97 | 117 | - | - | |
Sed11g1648 | 347 | MobiDBLite | consensus disorder prediction | 207 | 228 | - | - | |
Sed11g1648 | 347 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Sed11g1648 | 347 | ProSiteProfiles | Zinc finger C3H1-type profile. | 297 | 325 | IPR000571 | GO:0046872(InterPro) | |
Sed11g1648 | 347 | SMART | c3hfinal6 | 259 | 286 | IPR000571 | GO:0046872(InterPro) | |
Sed11g1648 | 347 | SMART | c3hfinal6 | 297 | 324 | IPR000571 | GO:0046872(InterPro) | |
Sed11g1648 | 347 | SUPERFAMILY | CCCH zinc finger | 293 | 327 | IPR036855 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g2278 | Sed-Chr11:35951939 | Sed11g1648 | Sed-Chr11:31762985 | 3.70E-33 | transposed | |
Sed11g1648 | Sed-Chr11:31762985 | Sed03g1144 | Sed-Chr3:7137150 | 1.50E-132 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40011 | PF00642 | zf-CCCH | 1.40E-11 | CL0537 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1648 | K18753 | - | csv:101203274 | 582.793 |