Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1659 | ATGGCGGTTTTACCCTTCAACTCATTCAACTTGGATCTCTCCATTTCCATGCCCGGATTTGCTTCTTCGTCCCCGTCTCGTCCATCTTTTGTGAGAGAATTGGACATGAACAGGTTACCCGAGGCCGAAGCGACGGAGGAAGAATGGGCGGTGGCGGTGAGCGCGGAGGAAGACGAAGAAGGGAGCTGCATTAGTGGATGTAAGCCGAGGAAGAAGCTTCGGCTGTCGAAAAATCAGTATCGTCTTCTTGAAGAAAGCTTCAGAATCAGCCATATATTAAACCATAAGCAGAAGGAAGCTTTGGCTATGGAGTTGAAGTTGAAGCCAAGGCAAGTTGAAGTATGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAACAAATTGAGATGGAGTGTGAGTATTTGAAAAGATGGTTTGGATCATTGACCGAGCAAAATCACCGGTTGCGGCGAGAACTGGAGGAGCTGAGGGCCATCAAGGTTTCTTCGTCCGCCGTGGTCACACCCCACGGCGGACAGCCACCACTTCCGGGACCCACTATAACCACGTGTCCCCGATGTACTAGCACGACTACGGCGGTAACGTTTAATAAGACTGCAGTCACCAATATTGCTAACGCTGCCACAGCCACGGCCACCACAATGGCATAA | 651 | 50.54 | MAVLPFNSFNLDLSISMPGFASSSPSRPSFVRELDMNRLPEAEATEEEWAVAVSAEEDEEGSCISGCKPRKKLRLSKNQYRLLEESFRISHILNHKQKEALAMELKLKPRQVEVWFQNRRARSKLKQIEMECEYLKRWFGSLTEQNHRLRRELEELRAIKVSSSAVVTPHGGQPPLPGPTITTCPRCTSTTTAVTFNKTAVTNIANAATATATTMA | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31869893 | 31873385 | + | Sed0022666.1 | Sed11g1659 | 730305 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1659 | 216 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 48 | 200 | IPR050762 | - | |
Sed11g1659 | 216 | SUPERFAMILY | Homeodomain-like | 61 | 127 | IPR009057 | - | |
Sed11g1659 | 216 | CDD | homeodomain | 69 | 127 | IPR001356 | GO:0003677(InterPro) | |
Sed11g1659 | 216 | ProSitePatterns | 'Homeobox' domain signature. | 101 | 124 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Sed11g1659 | 216 | Gene3D | - | 67 | 133 | - | - | |
Sed11g1659 | 216 | Coils | Coil | 139 | 159 | - | - | |
Sed11g1659 | 216 | ProSiteProfiles | 'Homeobox' domain profile. | 66 | 126 | IPR001356 | GO:0003677(InterPro) | |
Sed11g1659 | 216 | SMART | HOX_1 | 68 | 130 | IPR001356 | GO:0003677(InterPro) | |
Sed11g1659 | 216 | SMART | halz | 126 | 169 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed11g1659 | 216 | Pfam | Homeodomain | 70 | 124 | IPR001356 | GO:0003677(InterPro) | |
Sed11g1659 | 216 | Pfam | Homeobox associated leucine zipper | 126 | 158 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0211 | Sed-Chr6:1565784 | Sed11g1659 | Sed-Chr11:31869893 | 6.20E-51 | dispersed | |
Sed11g1659 | Sed-Chr11:31869893 | Sed12g0039 | Sed-Chr12:269598 | 5.10E-30 | dispersed | |
Sed11g1659 | Sed-Chr11:31869893 | Sed07g0689 | Sed-Chr7:5141100 | 6.70E-30 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40012 | PF00046 | Homeodomain | 1.00E-15 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1659 | K09338 | - | rcu:8258190 | 217.624 |