Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1659 ATGGCGGTTTTACCCTTCAACTCATTCAACTTGGATCTCTCCATTTCCATGCCCGGATTTGCTTCTTCGTCCCCGTCTCGTCCATCTTTTGTGAGAGAATTGGACATGAACAGGTTACCCGAGGCCGAAGCGACGGAGGAAGAATGGGCGGTGGCGGTGAGCGCGGAGGAAGACGAAGAAGGGAGCTGCATTAGTGGATGTAAGCCGAGGAAGAAGCTTCGGCTGTCGAAAAATCAGTATCGTCTTCTTGAAGAAAGCTTCAGAATCAGCCATATATTAAACCATAAGCAGAAGGAAGCTTTGGCTATGGAGTTGAAGTTGAAGCCAAGGCAAGTTGAAGTATGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAACAAATTGAGATGGAGTGTGAGTATTTGAAAAGATGGTTTGGATCATTGACCGAGCAAAATCACCGGTTGCGGCGAGAACTGGAGGAGCTGAGGGCCATCAAGGTTTCTTCGTCCGCCGTGGTCACACCCCACGGCGGACAGCCACCACTTCCGGGACCCACTATAACCACGTGTCCCCGATGTACTAGCACGACTACGGCGGTAACGTTTAATAAGACTGCAGTCACCAATATTGCTAACGCTGCCACAGCCACGGCCACCACAATGGCATAA 651 50.54 MAVLPFNSFNLDLSISMPGFASSSPSRPSFVRELDMNRLPEAEATEEEWAVAVSAEEDEEGSCISGCKPRKKLRLSKNQYRLLEESFRISHILNHKQKEALAMELKLKPRQVEVWFQNRRARSKLKQIEMECEYLKRWFGSLTEQNHRLRRELEELRAIKVSSSAVVTPHGGQPPLPGPTITTCPRCTSTTTAVTFNKTAVTNIANAATATATTMA 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31869893 31873385 + Sed0022666.1 Sed11g1659 730305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1659 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 48 200 IPR050762 -
Sed11g1659 216 SUPERFAMILY Homeodomain-like 61 127 IPR009057 -
Sed11g1659 216 CDD homeodomain 69 127 IPR001356 GO:0003677(InterPro)
Sed11g1659 216 ProSitePatterns 'Homeobox' domain signature. 101 124 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed11g1659 216 Gene3D - 67 133 - -
Sed11g1659 216 Coils Coil 139 159 - -
Sed11g1659 216 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677(InterPro)
Sed11g1659 216 SMART HOX_1 68 130 IPR001356 GO:0003677(InterPro)
Sed11g1659 216 SMART halz 126 169 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed11g1659 216 Pfam Homeodomain 70 124 IPR001356 GO:0003677(InterPro)
Sed11g1659 216 Pfam Homeobox associated leucine zipper 126 158 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0211 Sed-Chr6:1565784 Sed11g1659 Sed-Chr11:31869893 6.20E-51 dispersed
Sed11g1659 Sed-Chr11:31869893 Sed12g0039 Sed-Chr12:269598 5.10E-30 dispersed
Sed11g1659 Sed-Chr11:31869893 Sed07g0689 Sed-Chr7:5141100 6.70E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40012 PF00046 Homeodomain 1.00E-15 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1659 K09338 - rcu:8258190 217.624