Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1683 ATGGATGATGTGAAGGACCTGGTCAAGGCTTTCATCAAAAGCTTCACTACTTCCTTCACCTCTATTTCTTCTTCTCCAAGTTTCGAAGGCCATGGCAGGGCTTTAGGATCATCGTCTTCTTCTTCAGGATCAACTACTTCTCCATCGCAAACCCTAAACCTGGTAACTTCTAAACCCCCGATTTCGATTCCAAATTCCACACCCAAAAATGGGTCAGGACTGTTAAACAAGTCGAACCCAGTTCGTGAATCGGGTGTTACTACCTCAAATGGGTCAGAACTGTTAAACAAATCGAACCCAGTTCGTGTTTCGGGTGATACTACCTCAAATGGGTCAGAACTGTTGAACAAATCGAACCCAGTTCGTGTATCGGGTGATGGATTCGACCCATTTGCATCGTTTATTACATCTGGTAAGAGAATTGGAAATGGGTATTCCTTGGATTTGTTTGAGTGTCCGGTTTGTGGCCGGAGTTACAGGTCCGAAGAAGAGGTTTCGATTCATGTCGATAGCTGTGTTAGTGATAATGCAGCCAAGAGACCAGCAGATTCTGAATCTTGGAGTCGATTGGAGCGTTGTGTTGGGTCTTTCTTGTCAGGGAAGCCATCACAAGGCTCACTAGAAATTGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCGGAGAATTCGAAGTTTCGAAGGATTCGTTTAGGTAATCCCAGGATTAAGGTGGCCATTGGTGAGGCTGTGGGAGGAGTGGAGTTGTTGGAGTTTGTGGGGTTTAAGTTGCAAGAGGAAGAGGGTGAAATGTGGGCAACTATGGAAGTTCCAACAGAGGAGGAGACTAATATATTAAGTAAGGTAATCGATTCGATTGACTGGCCGAAGCTTGATGAACAGAAAAAGAAAGACAGCCCTGCATCTATAGCTTCAACTCAGGTTGATGAACTGATTGAACCTAAGAAGGTTGATAGACAGATTCGGGTCTTTTTCGCTGTCCCGGAAAACATTGCAGCAAACATTGAGCTACCAGACTCCTACAAATATTCAGCTGAAGAGGCTAAAAGAGAAGCTATAAAGAGGAAGCAAAAGCTTGCTGAATCTCAGCTCTTGGTTCCCAAATCATACAAGGAAAAACAGGCAAGAGCTGCTAGAAGGAAGTACACAAGAACAGTTATTAGAATTCAGTTTCCCGAGGGCATTGTACTTCAAGGTGTTTTTAATCCTCGGGAGCCGACAACTGCTCTATATGAGTTTGTGAGCGCATCATTGAAAGAACCCAGGTTGGAATTCGAGTTGATAAATCCTGTCGGTGTGAAACGACGTTCGATCGCACATTTTCCTGCTGTGGGAGAGAAAGCTAAAACACTAGACGATGAGGAGTTAGTCCCCTCAGCTCTTGTCAAGTGTAGACCCATTGAAACAGACTCGGTTGTATTCACAGGTTTGCGTGACGAACTCCTTGAGATCAGTGAGCCACTGGTTAGCGGTTCAGCCATGGCTCCTCCCGCACGAGTTTGA 1503 44.98 MDDVKDLVKAFIKSFTTSFTSISSSPSFEGHGRALGSSSSSSGSTTSPSQTLNLVTSKPPISIPNSTPKNGSGLLNKSNPVRESGVTTSNGSELLNKSNPVRVSGDTTSNGSELLNKSNPVRVSGDGFDPFASFITSGKRIGNGYSLDLFECPVCGRSYRSEEEVSIHVDSCVSDNAAKRPADSESWSRLERCVGSFLSGKPSQGSLEIVLKLLRNIVREPENSKFRRIRLGNPRIKVAIGEAVGGVELLEFVGFKLQEEEGEMWATMEVPTEEETNILSKVIDSIDWPKLDEQKKKDSPASIASTQVDELIEPKKVDRQIRVFFAVPENIAANIELPDSYKYSAEEAKREAIKRKQKLAESQLLVPKSYKEKQARAARRKYTRTVIRIQFPEGIVLQGVFNPREPTTALYEFVSASLKEPRLEFELINPVGVKRRSIAHFPAVGEKAKTLDDEELVPSALVKCRPIETDSVVFTGLRDELLEISEPLVSGSAMAPPARV 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32076447 32079614 - Sed0015632.1 Sed11g1683 730329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1683 500 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 491 - GO:0050832(PANTHER)
Sed11g1683 500 SMART PGNneu 205 272 - -
Sed11g1683 500 Pfam PUB domain 204 276 IPR018997 -
Sed11g1683 500 Pfam UBX domain 381 459 IPR001012 GO:0005515(InterPro)
Sed11g1683 500 SMART c2hc_5 149 173 IPR006642 GO:0003677(InterPro)|GO:0006281(InterPro)
Sed11g1683 500 MobiDBLite consensus disorder prediction 21 118 - -
Sed11g1683 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 181 IPR013087 -
Sed11g1683 500 ProSiteProfiles UBX domain profile. 380 464 IPR001012 GO:0005515(InterPro)
Sed11g1683 500 SUPERFAMILY Ubiquitin-like 351 462 IPR029071 -
Sed11g1683 500 CDD UBX_UBXN6 385 462 - -
Sed11g1683 500 Gene3D - 200 287 - -
Sed11g1683 500 FunFam UBX domain-containing protein 6 374 465 - -
Sed11g1683 500 SUPERFAMILY PUG domain-like 203 266 IPR036339 -
Sed11g1683 500 CDD PUB 199 287 - -
Sed11g1683 500 Gene3D - 374 467 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1106 Sed-Chr3:6774097 Sed11g1683 Sed-Chr11:32076447 2.00E-125 dispersed
Sed11g1683 Sed-Chr11:32076447 Sed03g1105 Sed-Chr3:6774097 2.50E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40013 PF00789 UBX 3.60E-05 CL0072 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1683 K14011 - csv:101209321 629.787