Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1692 ATGGCGTCCTCCGGCCACCAGGCCCCTCTCTTACGCTCCCGTCAGGCCTCCAACTCCGGCGGCCCCACTTCCACCATCAGCCCCCTCGCCGCTCTCTTGGGCCGCGCCACTGGCCGCCGCGGAACTTCCATGGTGGTTCGCGAGACTGCCGCCCGGCAACTCGAGGAGCGCCGCGTCGATTGGGGTTACTCCAAGCCGGTTGTGGCGCTCGACATTCTGTGGAATTTGGCTTTCGTTTTCGCTTCGCTGGGCGTGCTTATTCACGCGGCTGATGAAAAACCTAATTCGCCTATTCGGCTTTGGATTTTGGTTTATGCGATTCAGTGCTTGGTGCACGCTGTGCTTGTGTGGTTGGAGTTTAGGAGGAGGAATGCAAGGAGGGGTATGGATATGGAGACGCAGCAACAGCCTCAGCCTGATAGTGATGGATATTTTGCGAATGAAAGCGATGAAGAAGATGGTAGTCCGAGGAATCGTGTTGCTAAAAGATGTGAGTCGGTGAATACCATGGTATCATTAATTTGGTGGTTGATTGGCTCTTACTGGGTCGTGGCTGGTGGTAACGACCTCATGAAGAATGCTCCATCTTTGTACTGGCTGGCTGTTGTATTTCTGGCATTTGATGTGTTCTTTGCCATCTTTTGCGTTGTTTTGGCATGTTTGATCGGAATAGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTGTATGCTGTTGCAGGCCAGGAAGGTGCAACTGATTCAGATTTAAGTATGATTCCTAAATATAGATATCAAGTATCAAACCATCCTTCTCCCGGGGACGGGTTGATGGTTCCAGTTGAAACAAGCAGCAGATACTTGACGACTGAACGTGTTCTATTTTGCCAGGATGCGGAGTGCTGTATATGTCTTAGTTCATATGACAACGGAGTCGAGCTTCATGCTCTGCCTTGCAATCACCATTTTCATTCCGGGTGTATCACAAAATGGCTAAAGATAAATGCGACATGTCCTCTGTGCAAGTACAACATCTTGAAAAACTTCAAACCTGTGTAA 1041 49.66 MASSGHQAPLLRSRQASNSGGPTSTISPLAALLGRATGRRGTSMVVRETAARQLEERRVDWGYSKPVVALDILWNLAFVFASLGVLIHAADEKPNSPIRLWILVYAIQCLVHAVLVWLEFRRRNARRGMDMETQQQPQPDSDGYFANESDEEDGSPRNRVAKRCESVNTMVSLIWWLIGSYWVVAGGNDLMKNAPSLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATDSDLSMIPKYRYQVSNHPSPGDGLMVPVETSSRYLTTERVLFCQDAECCICLSSYDNGVELHALPCNHHFHSGCITKWLKINATCPLCKYNILKNFKPV 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32149135 32154063 - Sed0000765.1 Sed11g1692 730338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1692 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 341 IPR013083 -
Sed11g1692 346 SMART ring_2 295 335 IPR001841 -
Sed11g1692 346 MobiDBLite consensus disorder prediction 128 158 - -
Sed11g1692 346 CDD RING-H2_PA-TM-RING 294 336 - -
Sed11g1692 346 PANTHER TARGET OF ERK KINASE MPK-1 30 339 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Sed11g1692 346 FunFam E3 ubiquitin protein ligase RIE1 275 343 - -
Sed11g1692 346 Pfam Ring finger domain 294 336 IPR001841 -
Sed11g1692 346 SUPERFAMILY RING/U-box 282 342 - -
Sed11g1692 346 ProSiteProfiles Zinc finger RING-type profile. 295 336 IPR001841 -
Sed11g1692 346 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2118 Sed-Chr3:15388142 Sed11g1692 Sed-Chr11:32149135 1.20E-65 dispersed
Sed11g1692 Sed-Chr11:32149135 Sed12g0197 Sed-Chr12:1104885 4.00E-77 dispersed
Sed11g1692 Sed-Chr11:32149135 Sed02g1598 Sed-Chr2:51517566 1.40E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1692 - - - 0.0