Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1710 ATGGCCGACCAGATTCCGACAGTTCCACCCGTCGCCGATCGCCAACCATCACCCACACCGGAAGAAGATCCGACGCCGCCTCCGGCAGAATCTGTGACGGCGGCGGTGACCGATTCTTCCGCTCCACCGAAAAATGAGTCAATTCCACCAACAGTAGTTGTTACAGAGTCACTATCATCAGCTGCTACTGAAGAGAAGGTTCCACTCTCACCGCCGCCTGAAGCGGCGGAGAAAGAAGAGCCGCCGCCGCCGCAGCCAGCACCTCGACCATCGGAACCTAACTCCGAAGCAGAAGCAAAACCTTCCGATTCAGACGTTGTCGGCGTTGAATCTTCAACTAGATCCAAAACAATCGAAGCGGAGAAGATTCCTCAGAATTTGATTTCGTTCAAGGAGGAAAGTAACAGGGTGGCCGATCTTGCAGATTCCGAGAAAAAAGCTCTGGAAGAACTGAGGAAACTCGTTGAGGAAATCGAGCAAAGCGAGAAGAAGCTCTCGATTTGGGGAGTTCCGCTTCTCGAAGACGATCGGACCGACGTGATCTTGCTGAAGTTCTTGAGAGCTAGGGATTTCAAATCCAAGGATGCATTTCTCATGTTTCAAAACACGATGAAGTGGAGAGAGGAATTTGGAATCGATTCACTGGTGGATGAGATTCTGGGAGATGATTTGGAGAAGGTTGTGTATATGCATGGATCAACCAGGGAGAATCATCCAGTGTGTTACAATGTTTTTGGAGAGTTTCAGAACAAGGATTTGTATGCAAAAACGTTCTCTGATCAGGAAAAGAGGACCAAGTTCTTACGATGGAGGATTCAGTTCTTGGAAAGGAGTATTAGGAAACTTGATTTTCATCCTGGAGGTATTTCTACTATTTTTCAGGTTAATGATTTGAAGAACTCTCCTGGTCCTGGTAAGCGAGAGCTTAGATTGGCTACCAAACAAGCACTTCAAGTGCTTCAAGACAATTATCCTGAATTTGTAGCCAAACAGGTGTTTATCAACGTTCCTTGGTGGTATCTTGCATTCTATACGATGATCAACCCGTTTCTAACCCAGAGAACCAAGAGTAAATTTATCTTTGTAGGACCTACAAAATCTGCAGAGACCCTTTTCAAATACATGTCTCCCGAACACGTTCCGATTGAGTATGGTGGCTTGAGTGTTGATAATTGTGATTGCAACCCGGATTTCAATATTTCTGATCAAGTAACGGAAGTCTCAATCAAACCGTCAACTAAGCAAACTGTTGAAATCATAATTTATGAGAAGTGCATTATTCTTTGGGAGCTTCGTGTTATCGGATGGGAGGTGAGCTATAGTGCTGAATTTGTGCCCAATACCGAAGAAGCATATACTGTGATCATACAAAAGGGAAGAAAAATGGCTGCAACAGATGAACCAGTAATCTCTCAAAGTTTTAATGTCTCTGAACTGGGAAAAGTGTTATTTACCATTGACAATCCAACCTCTAAGAAGAAAAAGCTCCTATATAGGTTCAAGGTCAAGGTTTTAACAGAGTGA 1524 44.36 MADQIPTVPPVADRQPSPTPEEDPTPPPAESVTAAVTDSSAPPKNESIPPTVVVTESLSSAATEEKVPLSPPPEAAEKEEPPPPQPAPRPSEPNSEAEAKPSDSDVVGVESSTRSKTIEAEKIPQNLISFKEESNRVADLADSEKKALEELRKLVEEIEQSEKKLSIWGVPLLEDDRTDVILLKFLRARDFKSKDAFLMFQNTMKWREEFGIDSLVDEILGDDLEKVVYMHGSTRENHPVCYNVFGEFQNKDLYAKTFSDQEKRTKFLRWRIQFLERSIRKLDFHPGGISTIFQVNDLKNSPGPGKRELRLATKQALQVLQDNYPEFVAKQVFINVPWWYLAFYTMINPFLTQRTKSKFIFVGPTKSAETLFKYMSPEHVPIEYGGLSVDNCDCNPDFNISDQVTEVSIKPSTKQTVEIIIYEKCIILWELRVIGWEVSYSAEFVPNTEEAYTVIIQKGRKMAATDEPVISQSFNVSELGKVLFTIDNPTSKKKKLLYRFKVKVLTE 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32275976 32278813 - Sed0016902.1 Sed11g1710 730356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1710 507 SUPERFAMILY CRAL/TRIO domain 227 395 IPR036865 -
Sed11g1710 507 ProSiteProfiles GOLD domain profile. 402 502 IPR009038 -
Sed11g1710 507 MobiDBLite consensus disorder prediction 11 27 - -
Sed11g1710 507 PANTHER PATELLIN-1 102 501 IPR044834 GO:0008289(InterPro)
Sed11g1710 507 Pfam CRAL/TRIO, N-terminal domain 147 202 IPR011074 -
Sed11g1710 507 Coils Coil 137 164 - -
Sed11g1710 507 SMART sec14_4 222 389 IPR001251 -
Sed11g1710 507 MobiDBLite consensus disorder prediction 32 64 - -
Sed11g1710 507 MobiDBLite consensus disorder prediction 1 120 - -
Sed11g1710 507 Pfam CRAL/TRIO domain 226 386 IPR001251 -
Sed11g1710 507 MobiDBLite consensus disorder prediction 106 120 - -
Sed11g1710 507 Gene3D - 131 406 IPR036865 -
Sed11g1710 507 Gene3D GOLD domain 407 503 - -
Sed11g1710 507 MobiDBLite consensus disorder prediction 74 91 - -
Sed11g1710 507 SUPERFAMILY CRAL/TRIO N-terminal domain 135 218 IPR036273 -
Sed11g1710 507 CDD SEC14 223 387 IPR001251 -
Sed11g1710 507 FunFam SEC14 cytosolic factor family protein 222 402 - -
Sed11g1710 507 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 217 392 IPR001251 -
Sed11g1710 507 SMART CRAL_TRIO_N_2 178 203 IPR011074 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1710 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1724 Sed-Chr10:34299314 Sed11g1710 Sed-Chr11:32275976 1.00E-127 dispersed
Sed11g1710 Sed-Chr11:32275976 Sed14g0604 Sed-Chr14:6114969 2.00E-88 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1546 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed11g1710 . . . . . . . . Bhi06g00290 Tan10g2120 Cmetu03g2111 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000709 2 3 3 2 2 3 4 3 3 3 3 3 4 2 3 4 3 7 4 3 3 3 4 3 3 3 3 3 3 4 96