Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1725 | ATGAACCTGGGAATCATTGTTTTGTGGATTGTAGCAATCTCAATCCATGTAATTGGAGTTGTTTCTAAGACCAAATCGAAAGATGTTTCTGCACTGAATGTAATGTTCACGAGCTTAAATTCACCATCGCATCTGACTGGTTGGGGCTCAAAAGGGGGTGACCCATGTGGCGACTCTTGGGAAGGGATCAAATGCTCAGGATCATCCGTCACTGAAATAAGTTTATCAGACTATGGATTAAGTGGATCAATGGGTTACCAGCTCTCAAATTTGGTTTCTGTCACCTACTTTGATTTGAGCAAGAACAATCTCAATGGCGAAATCCCGTATCAGCTTCCTCCTAATTCTGTTCACATCGATTTTTCTGAAAACAGCTTCACTGGCAGCGTGCCTTATTCACTTTCTCAAATGCCTAAACTTGAATTTTTAAATCTGGGACATAACAAGCTTAATAATCAATTGAGTGACATGTTTAACAAGCTTTCTAAACTCAAAAGGATGGATCTGTCTTACAACTCCATTTCAGGAAACTTACCACAAAGTTTAAAGAAGCTTTCAAGCCTCACCGTACTGCACATACAAGAGAATCGATTTACAGGTTCAATTAATGTTCTTGCTGATCTTCCACTTGATGATTTGAATGTTGCAAATAACAAATTCACTGGATGGATTCCTGATAGTCTTGCTGATATTAATAATTTGGAAACGGTAGGAAACTCATGGTCAACTGGACCAGCTCCTCCCCCACCACCGGGCGCGCCATCTTCGACGAAAAGATCGAATAAAAACAACTCGAACGAGAAACCATTAGGCATAAGCGCGATGGCGATAGCCGGAATAGCAATGGGAGTGTTGGTAGTAATCGCCCTTGTCATCGCATTGGTGTCGATTAAAAGGTCTCGTCCTGCTTCTCATTTTCTTGATGAAGACAGCCATCACAGATCGGCCTTCTCGCCTCGCACACCGAAAGAAGCTGATAGAAAATCATTCAACTCAGAAGCTTCTGCTATTGACATAAACTCTCTTCAGAAAATGCAGCCGCCCCCGCCTACCGATCTAGCGCTCGGCCGTCTCAGCTCGAGACGAAGCACTTCGGTTCGTGCTGTTGCTTACTCCTTGGTTGATTTGCAGACGATTACTAGCAACTTTTCCACTGGTCGTTTACTTGGTGAGGGCACCATTGGACGAGTTTACAAGGCTAAGTGCGAAGATGGCAAGGTATTAGCAGTGAAGAAGATAGATTCATCAATATTTGAAGGGAGGAGAAGAGAAGAATTTTCGGAAATAGTTGCAATAATCTCAAAGCTTCACCACACAAACATTACAGAAGTGGTTGGATTTTGTTCAGAACAGGGACACAACATGTTGGTTTATGATTATGTTGTGAATGGTTCACTTCATGAGTTTCTTCATATGTCTAATGACTTTAGTAATCCACTCACTTGGAACACAAGAGTCAGAATTGCTTTGGGGACTGCAAGAGCTCTTGCGTACTTCCACGAAGTTTGTAAACCATCCATAGTTCACATGAATATCAAGTCCTCTAACATATTGCTTGATGCCGAACTCAATCCTCGCCTCTCAGACTTTGGTTTCGCAACTTTTTATGAGCGTAGAAGCCAAAACCGTGGAGCTGGATATGATGCTCCAGAATGCATAAAGGGTTCAAGTTATACGATGAAGGGTGACATTTACAGTTTGGGAGTAGTCATGTTGGAATTGTTGACCGGACGGATGCCTTATGACTCTTCAAAGGAAAAAGTGGAGCAAAGTCTAGTTCAATGGGCTACCCCACAGCTGCATGACATAAACGCATTGGACAAAATGGTGGATCCTGCATTGCGAGGTTTATATCCACCAAAGTCAGTTTCTAGGTTTGCAGATATCATTGCCCTTTGTGTTCAATCAGAGCCCGAATTTCGGCCTCCGATGTCCGAGGTGGTTCAAGCATTGGTAACTTTGGTTCAACGATCGAGCATGAACATGAGAGATGACTATGACTATTAA | 2007 | 42.6 | MNLGIIVLWIVAISIHVIGVVSKTKSKDVSALNVMFTSLNSPSHLTGWGSKGGDPCGDSWEGIKCSGSSVTEISLSDYGLSGSMGYQLSNLVSVTYFDLSKNNLNGEIPYQLPPNSVHIDFSENSFTGSVPYSLSQMPKLEFLNLGHNKLNNQLSDMFNKLSKLKRMDLSYNSISGNLPQSLKKLSSLTVLHIQENRFTGSINVLADLPLDDLNVANNKFTGWIPDSLADINNLETVGNSWSTGPAPPPPPGAPSSTKRSNKNNSNEKPLGISAMAIAGIAMGVLVVIALVIALVSIKRSRPASHFLDEDSHHRSAFSPRTPKEADRKSFNSEASAIDINSLQKMQPPPPTDLALGRLSSRRSTSVRAVAYSLVDLQTITSNFSTGRLLGEGTIGRVYKAKCEDGKVLAVKKIDSSIFEGRRREEFSEIVAIISKLHHTNITEVVGFCSEQGHNMLVYDYVVNGSLHEFLHMSNDFSNPLTWNTRVRIALGTARALAYFHEVCKPSIVHMNIKSSNILLDAELNPRLSDFGFATFYERRSQNRGAGYDAPECIKGSSYTMKGDIYSLGVVMLELLTGRMPYDSSKEKVEQSLVQWATPQLHDINALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDYDY | 668 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 32358988 | 32369092 | - | Sed0027640.1 | Sed11g1725 | 730371 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1725 | 668 | Gene3D | Phosphorylase Kinase; domain 1 | 354 | 460 | - | - | |
Sed11g1725 | 668 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 274 | 653 | IPR051420 | - | |
Sed11g1725 | 668 | FunFam | Protein STRUBBELIG-RECEPTOR FAMILY 8 | 354 | 460 | - | - | |
Sed11g1725 | 668 | Coils | Coil | 147 | 167 | - | - | |
Sed11g1725 | 668 | ProSiteProfiles | Protein kinase domain profile. | 383 | 654 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g1725 | 668 | Gene3D | Ribonuclease Inhibitor | 25 | 268 | IPR032675 | - | |
Sed11g1725 | 668 | SUPERFAMILY | Protein kinase-like (PK-like) | 363 | 651 | IPR011009 | - | |
Sed11g1725 | 668 | SUPERFAMILY | L domain-like | 28 | 236 | - | - | |
Sed11g1725 | 668 | Pfam | Protein kinase domain | 384 | 649 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g1725 | 668 | MobiDBLite | consensus disorder prediction | 305 | 330 | - | - | |
Sed11g1725 | 668 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 3 | 25 | 252 | - | - | |
Sed11g1725 | 668 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 461 | 665 | - | - | |
Sed11g1725 | 668 | Pfam | Leucine rich repeat | 156 | 198 | IPR001611 | GO:0005515(InterPro) | |
Sed11g1725 | 668 | Pfam | Leucine rich repeat N-terminal domain | 27 | 66 | IPR013210 | - | |
Sed11g1725 | 668 | Gene3D | Transferase(Phosphotransferase) domain 1 | 461 | 667 | - | - | |
Sed11g1725 | 668 | MobiDBLite | consensus disorder prediction | 238 | 266 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1214 | Sed-Chr3:7771222 | Sed11g1725 | Sed-Chr11:32358988 | 1.80E-254 | dispersed | |
Sed06g2278 | Sed-Chr6:46301876 | Sed11g1725 | Sed-Chr11:32358988 | 1.80E-154 | dispersed | |
Sed06g2279 | Sed-Chr6:46301876 | Sed11g1725 | Sed-Chr11:32358988 | 1.20E-152 | dispersed | |
Sed08g1942 | Sed-Chr8:33820667 | Sed11g1725 | Sed-Chr11:32358988 | 1.10E-132 | dispersed | |
Sed11g1725 | Sed-Chr11:32358988 | Sed14g1427 | Sed-Chr14:22856936 | 2.00E-93 | dispersed | |
Sed11g1725 | Sed-Chr11:32358988 | Sed01g1998 | Sed-Chr1:14944669 | 9.00E-134 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79920 | PF00069 | Pkinase | 3.20E-44 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1725 | - | - | - | 0.0 |