Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1725 ATGAACCTGGGAATCATTGTTTTGTGGATTGTAGCAATCTCAATCCATGTAATTGGAGTTGTTTCTAAGACCAAATCGAAAGATGTTTCTGCACTGAATGTAATGTTCACGAGCTTAAATTCACCATCGCATCTGACTGGTTGGGGCTCAAAAGGGGGTGACCCATGTGGCGACTCTTGGGAAGGGATCAAATGCTCAGGATCATCCGTCACTGAAATAAGTTTATCAGACTATGGATTAAGTGGATCAATGGGTTACCAGCTCTCAAATTTGGTTTCTGTCACCTACTTTGATTTGAGCAAGAACAATCTCAATGGCGAAATCCCGTATCAGCTTCCTCCTAATTCTGTTCACATCGATTTTTCTGAAAACAGCTTCACTGGCAGCGTGCCTTATTCACTTTCTCAAATGCCTAAACTTGAATTTTTAAATCTGGGACATAACAAGCTTAATAATCAATTGAGTGACATGTTTAACAAGCTTTCTAAACTCAAAAGGATGGATCTGTCTTACAACTCCATTTCAGGAAACTTACCACAAAGTTTAAAGAAGCTTTCAAGCCTCACCGTACTGCACATACAAGAGAATCGATTTACAGGTTCAATTAATGTTCTTGCTGATCTTCCACTTGATGATTTGAATGTTGCAAATAACAAATTCACTGGATGGATTCCTGATAGTCTTGCTGATATTAATAATTTGGAAACGGTAGGAAACTCATGGTCAACTGGACCAGCTCCTCCCCCACCACCGGGCGCGCCATCTTCGACGAAAAGATCGAATAAAAACAACTCGAACGAGAAACCATTAGGCATAAGCGCGATGGCGATAGCCGGAATAGCAATGGGAGTGTTGGTAGTAATCGCCCTTGTCATCGCATTGGTGTCGATTAAAAGGTCTCGTCCTGCTTCTCATTTTCTTGATGAAGACAGCCATCACAGATCGGCCTTCTCGCCTCGCACACCGAAAGAAGCTGATAGAAAATCATTCAACTCAGAAGCTTCTGCTATTGACATAAACTCTCTTCAGAAAATGCAGCCGCCCCCGCCTACCGATCTAGCGCTCGGCCGTCTCAGCTCGAGACGAAGCACTTCGGTTCGTGCTGTTGCTTACTCCTTGGTTGATTTGCAGACGATTACTAGCAACTTTTCCACTGGTCGTTTACTTGGTGAGGGCACCATTGGACGAGTTTACAAGGCTAAGTGCGAAGATGGCAAGGTATTAGCAGTGAAGAAGATAGATTCATCAATATTTGAAGGGAGGAGAAGAGAAGAATTTTCGGAAATAGTTGCAATAATCTCAAAGCTTCACCACACAAACATTACAGAAGTGGTTGGATTTTGTTCAGAACAGGGACACAACATGTTGGTTTATGATTATGTTGTGAATGGTTCACTTCATGAGTTTCTTCATATGTCTAATGACTTTAGTAATCCACTCACTTGGAACACAAGAGTCAGAATTGCTTTGGGGACTGCAAGAGCTCTTGCGTACTTCCACGAAGTTTGTAAACCATCCATAGTTCACATGAATATCAAGTCCTCTAACATATTGCTTGATGCCGAACTCAATCCTCGCCTCTCAGACTTTGGTTTCGCAACTTTTTATGAGCGTAGAAGCCAAAACCGTGGAGCTGGATATGATGCTCCAGAATGCATAAAGGGTTCAAGTTATACGATGAAGGGTGACATTTACAGTTTGGGAGTAGTCATGTTGGAATTGTTGACCGGACGGATGCCTTATGACTCTTCAAAGGAAAAAGTGGAGCAAAGTCTAGTTCAATGGGCTACCCCACAGCTGCATGACATAAACGCATTGGACAAAATGGTGGATCCTGCATTGCGAGGTTTATATCCACCAAAGTCAGTTTCTAGGTTTGCAGATATCATTGCCCTTTGTGTTCAATCAGAGCCCGAATTTCGGCCTCCGATGTCCGAGGTGGTTCAAGCATTGGTAACTTTGGTTCAACGATCGAGCATGAACATGAGAGATGACTATGACTATTAA 2007 42.6 MNLGIIVLWIVAISIHVIGVVSKTKSKDVSALNVMFTSLNSPSHLTGWGSKGGDPCGDSWEGIKCSGSSVTEISLSDYGLSGSMGYQLSNLVSVTYFDLSKNNLNGEIPYQLPPNSVHIDFSENSFTGSVPYSLSQMPKLEFLNLGHNKLNNQLSDMFNKLSKLKRMDLSYNSISGNLPQSLKKLSSLTVLHIQENRFTGSINVLADLPLDDLNVANNKFTGWIPDSLADINNLETVGNSWSTGPAPPPPPGAPSSTKRSNKNNSNEKPLGISAMAIAGIAMGVLVVIALVIALVSIKRSRPASHFLDEDSHHRSAFSPRTPKEADRKSFNSEASAIDINSLQKMQPPPPTDLALGRLSSRRSTSVRAVAYSLVDLQTITSNFSTGRLLGEGTIGRVYKAKCEDGKVLAVKKIDSSIFEGRRREEFSEIVAIISKLHHTNITEVVGFCSEQGHNMLVYDYVVNGSLHEFLHMSNDFSNPLTWNTRVRIALGTARALAYFHEVCKPSIVHMNIKSSNILLDAELNPRLSDFGFATFYERRSQNRGAGYDAPECIKGSSYTMKGDIYSLGVVMLELLTGRMPYDSSKEKVEQSLVQWATPQLHDINALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDYDY 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32358988 32369092 - Sed0027640.1 Sed11g1725 730371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1725 668 Gene3D Phosphorylase Kinase; domain 1 354 460 - -
Sed11g1725 668 PANTHER LEUCINE RICH REPEAT KINASE 2 274 653 IPR051420 -
Sed11g1725 668 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 354 460 - -
Sed11g1725 668 Coils Coil 147 167 - -
Sed11g1725 668 ProSiteProfiles Protein kinase domain profile. 383 654 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1725 668 Gene3D Ribonuclease Inhibitor 25 268 IPR032675 -
Sed11g1725 668 SUPERFAMILY Protein kinase-like (PK-like) 363 651 IPR011009 -
Sed11g1725 668 SUPERFAMILY L domain-like 28 236 - -
Sed11g1725 668 Pfam Protein kinase domain 384 649 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1725 668 MobiDBLite consensus disorder prediction 305 330 - -
Sed11g1725 668 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 252 - -
Sed11g1725 668 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 461 665 - -
Sed11g1725 668 Pfam Leucine rich repeat 156 198 IPR001611 GO:0005515(InterPro)
Sed11g1725 668 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Sed11g1725 668 Gene3D Transferase(Phosphotransferase) domain 1 461 667 - -
Sed11g1725 668 MobiDBLite consensus disorder prediction 238 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1214 Sed-Chr3:7771222 Sed11g1725 Sed-Chr11:32358988 1.80E-254 dispersed
Sed06g2278 Sed-Chr6:46301876 Sed11g1725 Sed-Chr11:32358988 1.80E-154 dispersed
Sed06g2279 Sed-Chr6:46301876 Sed11g1725 Sed-Chr11:32358988 1.20E-152 dispersed
Sed08g1942 Sed-Chr8:33820667 Sed11g1725 Sed-Chr11:32358988 1.10E-132 dispersed
Sed11g1725 Sed-Chr11:32358988 Sed14g1427 Sed-Chr14:22856936 2.00E-93 dispersed
Sed11g1725 Sed-Chr11:32358988 Sed01g1998 Sed-Chr1:14944669 9.00E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79920 PF00069 Pkinase 3.20E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1725 - - - 0.0