Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1728 ATGAGGACTGGGAATCGAAAGAGGAAGCTAAGGTTAAGCAAGATCTATTCATTTGCTTGTGGAAGAGCTTCATTGAAAGATGAAGATCATTCGCAAATCGGGAGGCCCGGATTCTCCCGGGTGGTTTTCTGCAATGATCCTGATTGTTTGGAGGCTGGAATGTGTAATTATGTTGACAATTCCATTAGGTCTACAAAGTTCACGCCCATCACTTTTGTGCCCAAGTCCCTGTTTGAGCAGTTCAGGAGGGTGGCTAATTTTTTCTTCCTGGTTGTTGGTATTCTAGCCTTCACTCCTCTTGCTCCTTATACTGCTGTCAGTGCAATTATCCCTCTTATTGCAGTCATTATTGCCACAATGATTAAAGAAGGTATTGAAGATTACCGACGAAAGGCACAGGATATTGAGGTGAATAATAGAAAGGTTAAAGTTCATCAAGGCAATGCAGTCTTCGATTATACTGAATGGAAAACTTTGAGGGTTGGAGATATAGTGAAGGTTGAAAAGGATCAATATTTTCCAGCTGACCTGCTTTTGATTTCATCCTGCTATGAGGATGGAATATGTTATGTAGAAACAATGAACCTTGATGGGGAAACAAATCTAAAGGTAAAACAAGCACTTGATGTAACTGCATTTGCAAATGAGGATTCTCACTTCCGTGACTTTAAGGCTACAATCAAATGTGAAGACCCAAATGCAAATCTGTATAACTTTGTTGGGAGCATGGACTTTGAAACGCAACAATATCCACTTTCTCCACAAAATCTTCTCTTGAGAGACTCCAAACTCCGAAACACTGAATTTATATATGGGGTTGTTGTCTTTACTGGTCAAGATTCGAAGGTTATTCAAAATTCCGTTGATCCACCTTCTAAGAGAAGCAAAGTTGAGAAGAAGATGGATAAAATCATATATCTGTTGTTTAGTACTCTATTCTTGCTGGCATTTATTGGATCCATAATCTTTGGCATCATGACTCAAGATGATCTGAAAAATGGGAGGATGAAGAGATGGTATCTTAGACCGGATGATTCGACTATTTTCTTCGATTCCAAAAGGGCACCTGCTGCTGCATTTTTTCACTTTCTGACTGCACTGATGCTGTATAACTACTTTATCCCTATATCCTTGTATGTGTCTATTGAAATTGTCAAAGTTCTTCAGAGTATCTTCATCAATCAAGACATTCACATGTACTATGAAGAAGCTGATAAACCAGCACATGCCCGCACCTCCAATTTGAATGAGGAGCTTGGTCAAGTCGACACTATACTATCTGACAAGACTGGAACTTTGACCTGTAATTCAATGGAGTTTATCAAGTGTTCTGTGGCTGGAACAGCTTATGGCAGTGGAGTTACTGAAACTGAGAAAGTTATGGAAGGCAGAAATGGTATGCCAATGCTTAATGGAAATGGCAATGGCAATGGAAATGGAAATGGAAATATCTATAAGCACCATGAGTATGCTACAGATACAACTCCCCCTGTCAAAGGCTTTAATTTTAAGGACAGAAGGATTATGAACGGAAACTGGGTTAATGAACCTAATGCAGATATCATCCAGAAGTTCTTCCGCCTCCTTGCAACTTGTCATACAGCTATTCCTGATGTGGATGAAAACACAGGCAAGATTTCATATGAAGCTGAATCGCCAGATGAAGCTGCATTTGTAATTGCTGCCAAAGAAGTTGGTTTTGAATTCTACCAGAGGACACAGACAAGCATATCAGTTCGTGAACTGGATCCTAGGTCTGGTAGGAAGGTGGAAAGGTCATATAAGCTTTTAAATGTCTTGGAGTTCAATAGCACCCGGAAGAGGATGTCTGTCATTATAAGAGATGAAGAAGGGAAAGTACTATTACTATGCAAAGGCGCTGACAGTGTCATGTTTGAGAGGCTTGCCAAGAGTGCTAGTGAATTTGAAGAGGAAACAAAGGACCATATCAATGTGTATGCTGATGCAGGGCTAAGGACTTTGGTACTTGCTTATCGGGAACTTGATGAAGAGGAATACAAGGAATTTGATAAGAAATTCTATGAAGCAAAGAATTCAGTTAGTGCAGACAGGGACTCATTGATTGATAAAGTAACAGATTGCATGGAAAGGGATTTAATTCTTCTTGGTTCCACAGCAGTTGAGGACAAGCTTCAAAATGGGGTCCCTGAGTGCATAGACAAACTTGCTCAAGCTGGGATTAAGATCTGGGTTTTGACTGGGGACAAGATGGAGACTGCAATCAATATTGGTTTTTCCTGTAGTTTGCTTAGACAAGGAATGAAACAGATTATTGTAACTCTGGAGACACCAGAAATTCGAGCCTTAGAAAGGACGGGAGAGAAGGATATGATCACTAAGGCATCTAAAGAATGTATCGTCCACAAGATAACACGGGCAAGGTCTCAGCTCACTGCATCAACTGGAAGCTCTGAGGCTTATGCGTTGATAATTGATGGGAAATCACTTGCTTATGCTCTAGAAGATGATGTGAAGGATGCATTCTTTGAGCTTGCAATTGGATGTGCATCCGTTATTTGCTGTCGTTCATCTCCAAAGCAGAAGGCAATGGTCACCAAGTTGGTTAAACTTGCGACGGGGAAAACGACATTAGCAATTGGTGATGGCGCAAATGATGTTGGCATGCTTCAAGAAGCAGATATTGGAGTCGGAATCAGTGGTGCCGAAGGAATGCAGGCAGTCATGTCCAGTGATATTGCAATTGCTCAGTTCAGATACTTGGAGCGTCTACTACTCGTGCATGGACATTGGTGCTACAGAAGATTATCATCAATGATATGTTACTTTTTCTACAAGAACTTCACATTTGGTTTTACAATTTTCTTGTATGAGGCATACACTTCATTCTCTGGACAACCTGCATATAATGACTGGTTTATGTCACTCTACAATGTTGTGTTCTCTGCACTGCCTGTTGTGGCTCTTGGGGTGTTTGATCAGGATGTGTCAGCAAGATATTGCCTAAAGTATCCTATGTTGTACCAACAAGGTGTGCAGAATGTCCTCTTCAGCTGGGCCCGGATAATCAGCTGGATGTTTAATGGTCTGTGTAATGCATTGGTCATTTTCTTTTTCTGCACAAGTGGAATGCAGCATCAAGCGTTTAATCTCGAGGGGAAAACTGCGGGAAGGGATATTCTAGGAGGGACGATGCTGTCATGCGTCGTTTGGGTTGTCAACTTGCAGATGGCACTCTCTGTTAGCTACTTCACCTTGTTACAACACATTTTAATCTGGGCTTCAATTTTTATCTGGTACATCTTTTTGATGGTCTATGGAGCTTTGCCTGCCAGAGTTTCAGGGAACGCATATCGCGTGTTCCTGGAAGCCCTTGCTCCTTCCGGGTCTTATTGGGTTCTGCTGATCTTTGTGGTTGTCTCTACTCTCATTCCATTCTTTATATACTCAGCATTACAGATGAATTTCTTTCCAATGTACCATGAAAAAATACAGTGGATAAGGCACGACGGTAAGGGTCAGATAGACGATCCCGAGTTTGTCAATATGGTCAGGCAAAACTCGTTGAGACCGACAACTGTGGGCTTCACTGCTCGTGTTGCAGCCAAAATAAGAAGAGATAAATCATAG 3609 41.31 MRTGNRKRKLRLSKIYSFACGRASLKDEDHSQIGRPGFSRVVFCNDPDCLEAGMCNYVDNSIRSTKFTPITFVPKSLFEQFRRVANFFFLVVGILAFTPLAPYTAVSAIIPLIAVIIATMIKEGIEDYRRKAQDIEVNNRKVKVHQGNAVFDYTEWKTLRVGDIVKVEKDQYFPADLLLISSCYEDGICYVETMNLDGETNLKVKQALDVTAFANEDSHFRDFKATIKCEDPNANLYNFVGSMDFETQQYPLSPQNLLLRDSKLRNTEFIYGVVVFTGQDSKVIQNSVDPPSKRSKVEKKMDKIIYLLFSTLFLLAFIGSIIFGIMTQDDLKNGRMKRWYLRPDDSTIFFDSKRAPAAAFFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDIHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGSGVTETEKVMEGRNGMPMLNGNGNGNGNGNGNIYKHHEYATDTTPPVKGFNFKDRRIMNGNWVNEPNADIIQKFFRLLATCHTAIPDVDENTGKISYEAESPDEAAFVIAAKEVGFEFYQRTQTSISVRELDPRSGRKVERSYKLLNVLEFNSTRKRMSVIIRDEEGKVLLLCKGADSVMFERLAKSASEFEEETKDHINVYADAGLRTLVLAYRELDEEEYKEFDKKFYEAKNSVSADRDSLIDKVTDCMERDLILLGSTAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFSCSLLRQGMKQIIVTLETPEIRALERTGEKDMITKASKECIVHKITRARSQLTASTGSSEAYALIIDGKSLAYALEDDVKDAFFELAIGCASVICCRSSPKQKAMVTKLVKLATGKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRLSSMICYFFYKNFTFGFTIFLYEAYTSFSGQPAYNDWFMSLYNVVFSALPVVALGVFDQDVSARYCLKYPMLYQQGVQNVLFSWARIISWMFNGLCNALVIFFFCTSGMQHQAFNLEGKTAGRDILGGTMLSCVVWVVNLQMALSVSYFTLLQHILIWASIFIWYIFLMVYGALPARVSGNAYRVFLEALAPSGSYWVLLIFVVVSTLIPFFIYSALQMNFFPMYHEKIQWIRHDGKGQIDDPEFVNMVRQNSLRPTTVGFTARVAAKIRRDKS 1202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32384420 32392296 - Sed0003041.1 Sed11g1728 730374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1728 1202 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Sed11g1728 1202 Pfam Phospholipid-translocating P-type ATPase C-terminal 901 1151 IPR032630 -
Sed11g1728 1202 FunFam Phospholipid-transporting ATPase 551 709 - -
Sed11g1728 1202 NCBIfam phospholipid-translocating P-type ATPase 57 1158 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Sed11g1728 1202 SFLD Haloacid Dehalogenase 408 924 - -
Sed11g1728 1202 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Sed11g1728 1202 PRINTS P-type cation-transporting ATPase superfamily signature 873 892 - -
Sed11g1728 1202 FunFam Phospholipid-transporting ATPase 709 913 - -
Sed11g1728 1202 CDD P-type_ATPase_APLT_Dnf-like 59 1033 - -
Sed11g1728 1202 SUPERFAMILY Calcium ATPase, transmembrane domain M 57 1150 IPR023298 -
Sed11g1728 1202 SUPERFAMILY HAD-like 421 928 IPR036412 -
Sed11g1728 1202 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 28 1160 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Sed11g1728 1202 FunFam Phospholipid-transporting ATPase 118 288 - -
Sed11g1728 1202 NCBIfam HAD-IC family P-type ATPase 839 955 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed11g1728 1202 SFLD p-type atpase 408 924 IPR044492 -
Sed11g1728 1202 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 508 679 IPR023299 GO:0000166(InterPro)
Sed11g1728 1202 Gene3D - 114 287 - -
Sed11g1728 1202 SUPERFAMILY Calcium ATPase, transduction domain A 148 284 IPR008250 -
Sed11g1728 1202 Gene3D - 555 682 IPR023299 GO:0000166(InterPro)
Sed11g1728 1202 Pfam Phospholipid-translocating ATPase N-terminal 42 108 IPR032631 -
Sed11g1728 1202 Gene3D - 705 913 IPR023214 -
Sed11g1728 1202 Pfam Cation transport ATPase (P-type) 531 635 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1972 Sed-Chr7:34517103 Sed11g1728 Sed-Chr11:32384420 0.00E+00 dispersed
Sed07g1973 Sed-Chr7:34517103 Sed11g1728 Sed-Chr11:32384420 0.00E+00 dispersed
Sed08g2156 Sed-Chr8:35485619 Sed11g1728 Sed-Chr11:32384420 0.00E+00 dispersed
Sed09g1675 Sed-Chr9:40123945 Sed11g1728 Sed-Chr11:32384420 0.00E+00 dispersed
Sed09g1676 Sed-Chr9:40123945 Sed11g1728 Sed-Chr11:32384420 1.50E-291 dispersed
Sed11g1728 Sed-Chr11:32384420 Sed14g0573 Sed-Chr14:5720843 5.30E-185 dispersed
Sed11g1728 Sed-Chr11:32384420 Sed11g1729 Sed-Chr11:32384420 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1728 K01530 - csv:101205800 2171.74