Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1741 ATGGCACTGGTTTTGCACGCTGGAAAGACGAATAAGAATTCTTTCAAAGCTCTCATTGCTGCAGAGTACAATGGAGTCGAAGTGAAATTGAACCCGGAGTTTGAGATGGGCGTCTCAAACAAGACTCCGGAGTTTATCAAGATGAACCCTATTGGGAAGGTCCCTGTTTTGGAAACGCCTGATGGCCCCATATTTGAAAGTAATGCGATAGCTCGCTATGTTGCACGCTTGAAGGCTGATACTACTCTGTATGGTTCGTCTCTGATAGATTATGGGCACATTGAACAGTGGATTGATTTTGCATCATTGGAGATAGATTCTAATACCCTAGCTTGGCTTAGACCCAGAATGGGAAGAGCTGCTTATATTCCTTCTGTGGAGGAAGCTGCAATTGCTGCATTGAAGAGGGGTTTGGGAGCTTTGAATTCATACCTTGCTTCAAAGACATACCTAGTTGGTCATTCTGTCACATTGGCTGATATTATCATGACTTGCTGCTTGTTTTTGGGTTTTTCTCGGCTCATGACTAAGAGCTTTACCTCAGAGTTCCCGCATATTGAGAGATATTTCTGGACCTTGGTCAATCAACCAAACATAAAAAAGATTCTAGGTGAGGTAAAGCAGGCAGAGTCTGTTCAACCAATTCAATCTGCAAAGAAACCCGATGAATCCGCTAAGCGAAAGAACGAGGACGAGGTCAAGAAAGAACCCAACAAGGAAGCTGAAAAAGAGAAGCCAAAGGCTGTAGTCGGCGAGGGAGAGGATGATGCACCGAAGCCAAAACCAAAGAATCCTCTTGATTTGCTTCCTCCAAGTAAGATGATTCTTGATGAGTGGAAGCGGCTGTACTCGAATACCAAAACTAATTTCCGAGAGGTTGCAATTAAAGGATTTTGGGACATGTATGATCCAGAAGGGTATTCTCTTTGGTTCTGTGATTACAAGTACAACGATGAGAATACTGTCTCGTTCGTGACTTTGAACAAGGTTGGTGGATTCCTCCAGCGAATGGATCTCGCTCGCAAGTATGCTTTCGGGAAGATGTTGGTGATTGGGTCAGAGGCGCCATTTAAAGTCAAGGGTTTGTGGCTTTTCCGCGGACAAGAGATCCCACAATTCGTCATGGACGAGTGCTACGACATGGAGCTCTATGAATGGAAGAAGGTCGACATATCGGACGAGGCACAGAAGGAATGCGTCAACCAGATGATTGAAGATCAGGAGCCTTTTGAAGGAGAGGCATTGTTGGATGCCAAATGCTTCAAGTGA 1269 44.68 MALVLHAGKTNKNSFKALIAAEYNGVEVKLNPEFEMGVSNKTPEFIKMNPIGKVPVLETPDGPIFESNAIARYVARLKADTTLYGSSLIDYGHIEQWIDFASLEIDSNTLAWLRPRMGRAAYIPSVEEAAIAALKRGLGALNSYLASKTYLVGHSVTLADIIMTCCLFLGFSRLMTKSFTSEFPHIERYFWTLVNQPNIKKILGEVKQAESVQPIQSAKKPDESAKRKNEDEVKKEPNKEAEKEKPKAVVGEGEDDAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFVMDECYDMELYEWKKVDISDEAQKECVNQMIEDQEPFEGEALLDAKCFK 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32519487 32524940 + Sed0022337.1 Sed11g1741 730387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1741 422 MobiDBLite consensus disorder prediction 213 269 - -
Sed11g1741 422 SUPERFAMILY Thioredoxin-like 2 85 IPR036249 -
Sed11g1741 422 CDD GST_N_EF1Bgamma 3 77 - -
Sed11g1741 422 Gene3D - 80 217 - -
Sed11g1741 422 FunFam Elongation factor 1B gamma 1 74 - -
Sed11g1741 422 SFLD Main (cytGST) 4 190 - -
Sed11g1741 422 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 262 422 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed11g1741 422 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 422 IPR044628 GO:0004364(InterPro)
Sed11g1741 422 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 262 422 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed11g1741 422 MobiDBLite consensus disorder prediction 220 262 - -
Sed11g1741 422 FunFam Elongation factor 1 gamma 80 216 - -
Sed11g1741 422 FunFam Elongation factor 1-gamma 1 262 422 - -
Sed11g1741 422 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 215 IPR010987 -
Sed11g1741 422 SUPERFAMILY GST C-terminal domain-like 73 210 IPR036282 -
Sed11g1741 422 Gene3D Glutaredoxin 1 74 - -
Sed11g1741 422 Pfam Glutathione S-transferase, N-terminal domain 10 76 IPR004045 -
Sed11g1741 422 SMART EF1G_2 261 369 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed11g1741 422 CDD GST_C_EF1Bgamma_like 90 210 - -
Sed11g1741 422 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Sed11g1741 422 Pfam Glutathione S-transferase, C-terminal domain 127 197 IPR004046 -
Sed11g1741 422 SFLD Glutathione Transferase (cytosolic) 4 190 IPR040079 -
Sed11g1741 422 Pfam Elongation factor 1 gamma, conserved domain 261 369 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed11g1741 422 SUPERFAMILY eEF1-gamma domain 262 422 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1741 Sed-Chr11:32519487 Sed13g1117 Sed-Chr13:10216242 6.50E-170 dispersed
Sed11g1741 Sed-Chr11:32519487 Sed11g1742 Sed-Chr11:32519487 3.50E-232 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1741 K03233 - rcu:8263260 699.508