Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1774 ATGGATGCGATCGAGGAGTTGGGTGAGTTGGCCGAATCGATGCGCCAAGCGGCTGCTCTGCTTGCCGATGAAGATGTTGACGACAACTCTTCTCGTAGGGCTACGACTTTCCTCAACGTTGTGGCTTTGGGCAATGTTGGTGCTGGCAAGTCTGCAGTTTTGAATAGTTTAATTGGACATCCTGTTCTGCCAACTGGTGAAAATGGTGCTACACGAGCTCCAATAAGCATTGACTTGCAGAGGGAAGGTTCTTTGAATAGTAAATCAATTATTCTGCAGATTGATAATAAATCTCAACAGGTTTCTGCAAGTGCTTTGCGACGTTCTCTACAGGACAGGTTGAGCAAGGGTTCGTCAGGAAATAGCCGAGATGAAATATATCTAAAGCTTCGTACGAGTACAGCTCCTCCACTAAAGTTGATTGATTTACCTGGGCTTGATCAACGGGCCATGGATGAATCTGTGGTTAGTGAATATGCTGAACATAATGATGCAATTTTGCTAGTTATCGTGCCGGCAGCCCAGGCTCATGAAATTGCTTCATCTCGAGCCCTACGAACTGCCAAGGAATTTGATTCAGATGGTACCAGAACCATTGGTGTAATTAGCAAAATTGACCAAGCTTCTTCAGACCAGAAGTCTATTGCTGCAGTGCAAGCTCTCCTGTTAAATCAAGGTCCAGCACGAGCCTCAGATATCCCATGGGTTGCTTTGATTGGTCAATCAGTTTCAATAGCTACCGCACAGTCTGGATCTGTTGGCTCTGATAATTCATTAGAGACTGCATGGAGAGCAGAGAGTGAAAGTCTTAAATCTATACTAACTGGTGCCCCTCAAAGTAAGCTAGGTAGGCCGGCTTTAGTTGATGCATTGTCCCAACAGATCCGCAAACGAATGAAAGTCCGGCTTCCTAATCTTCTATCCGGGTTACAAGGAAAGTCTCAAATAGTTCAAGATGAGTTAGTTAGGCTTGGTGAGCAAATGGTGAATGGTGTCGAGGGGACTAGAGCTCTAGCATTGGAACTTTGCCGTGAGTTTGAAGACAAGTTTCTCCAGCACATAGGCTCTGGTGAGGGTACAGGTTGGAAAATTGTTGCTAGCTTTGAGGGGAATTTTCCAAATCGAATCAAGCAATTGCCTTTAGACAGACACTTCGATATTAATAATGTTAAGAGGATTGTATTAGAAGCCGATGGTTATCAGCCTTATCTTATATCACCTGAGAAGGGTTTGAGATCTTTAATAAAAGGTGTTTTGGAGCTTGCAAAAGAACCATCACGTCTCTGTGTTGATGAGGTGCATAGAGTTTTGATAGATATTGTTTCTGCTGCTGCTAACGGCACCCCAGGTCTTGGAAGATACCCACCATTCAAAAGAGAGGTTGTGGCCATTGCAAGTGCGGCCCTAGATGGGTTTAAAAATGAGTCAAAAAAGATGGTTGTGGCATTAGTTGACATGGAGCGAGCATTTGTCCCACCACAACACTTTATACGCCTTGTTCAGAGAAGGATGGAAAGACAGCGCCGGGAGGAGGAAGTGAAGACTAGATCGTCAAAAAAAGGGCAAGAAGCTGAACAAGCAGTGTCAAACAGGGCAAGTAGTCCTCAAACAAATAGCCAGCAAGCTGGTGGAAGCTTGAAATCAATGAAAGAAAAACCTAGTAAGGAAGAGAAGGAAGTGCAGGAAAGTTCGGGTTTGAAGACAGCAGGTGCTGAAGGAGAGATAACAGCTGGCTACTTGTTAAAGAAAAGTGCAAAAACTAATGGGTGGAGCAGGCGATGGTTTGTTTTAAATGAGAAGACTGGAAAGCTTGGATACACCAAGAAGCAAGAAGAGAGACAGTTTCGTGGTGTCATTACTTTAGAGGATTGTAATCTTGAAGAAGTTGCAGACGAGGAAGAGGCTCCACCTCCACCTTCAAAGAGCTCAAAGGATAAAAAGGCTAATGGGCCAGATTCTGGAAAAGGATCAAATCTCGTGTTTAAGGTTACCAGCAAAGTCCCTTATAAAACCGTTTTAAAAGCCCATAGTTCTGTTGTTTTGAAGGCGGAGAGTGTTGCGGACAAGGTGGAATGGACAAATAAGATAAGCCAGGTCATTCAACCCTCCAAAGGAAGACAAATGAAAGGTGCATCCTCCGAAGGCGGTCTTAGCTTGCGGCAGAGTCTATCTGATGGTTCTCTAGATACTATGGCTCGAAAACCTGTTGATCCTGAAGAAGAGCTGCGGTGGATGTCTCAAGAGGTTCGTGGTTATGTTGAAGCAGTGTTGAATAGTTTGGCTGCAAATGTTCCCAAGGCTGTTGTACTTTGTCAAGTTGAGAAGGCCAAGGAAGACATGCTTAATCAACTATATAGCTCGATCAGTGCCCAAAGCTCTGCAAGGATTGAGGAGCTTCTTCAGGAGGACCAGAATGTAAAACGAAGGAGAGAACGCTATACAAAACAATCATCTCTCCTTTCAAAACTTACTCGCCAGCTCAGCATTCATGATAATCAAGCAGCTGCTGCTAGTTGGTCCGATGGCAGTGCAGAAAGTAGTCCCAAAACTAGCGGATCACCTGGAGGTGATTGGAGATCTGCATTTGATGCTGCTGCTAATAGCCGGGCTGACTCCAGAAGATCTTCTTCCAATGGCCACAGTAGACATTCTAACGATTCCATGCAAAATGGCGACATCGGTTCGAACTCTAGCAGCCGTCGTACTCCAAACCGGCTGCCACCAGCGCCTCCACCGTCTTCTAGTTCCAAGTACTTCTAG 2760 44.96 MDAIEELGELAESMRQAAALLADEDVDDNSSRRATTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQREGSLNSKSIILQIDNKSQQVSASALRRSLQDRLSKGSSGNSRDEIYLKLRTSTAPPLKLIDLPGLDQRAMDESVVSEYAEHNDAILLVIVPAAQAHEIASSRALRTAKEFDSDGTRTIGVISKIDQASSDQKSIAAVQALLLNQGPARASDIPWVALIGQSVSIATAQSGSVGSDNSLETAWRAESESLKSILTGAPQSKLGRPALVDALSQQIRKRMKVRLPNLLSGLQGKSQIVQDELVRLGEQMVNGVEGTRALALELCREFEDKFLQHIGSGEGTGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLIDIVSAAANGTPGLGRYPPFKREVVAIASAALDGFKNESKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKTRSSKKGQEAEQAVSNRASSPQTNSQQAGGSLKSMKEKPSKEEKEVQESSGLKTAGAEGEITAGYLLKKSAKTNGWSRRWFVLNEKTGKLGYTKKQEERQFRGVITLEDCNLEEVADEEEAPPPPSKSSKDKKANGPDSGKGSNLVFKVTSKVPYKTVLKAHSSVVLKAESVADKVEWTNKISQVIQPSKGRQMKGASSEGGLSLRQSLSDGSLDTMARKPVDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSSARIEELLQEDQNVKRRRERYTKQSSLLSKLTRQLSIHDNQAAAASWSDGSAESSPKTSGSPGGDWRSAFDAAANSRADSRRSSSNGHSRHSNDSMQNGDIGSNSSSRRTPNRLPPAPPPSSSSKYF 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32702616 32716892 + Sed0016992.2 Sed11g1774 730420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1774 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 313 IPR027417 -
Sed11g1774 919 SMART dynamin_3 4 246 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed11g1774 919 Pfam Dynamin central region 257 495 IPR000375 -
Sed11g1774 919 MobiDBLite consensus disorder prediction 504 521 - -
Sed11g1774 919 Gene3D - 561 707 IPR011993 -
Sed11g1774 919 ProSiteProfiles PH domain profile. 573 701 IPR001849 -
Sed11g1774 919 FunFam Dynamin-2A 566 705 - -
Sed11g1774 919 MobiDBLite consensus disorder prediction 522 547 - -
Sed11g1774 919 MobiDBLite consensus disorder prediction 703 728 - -
Sed11g1774 919 Coils Coil 4 24 - -
Sed11g1774 919 SMART GED_2 737 823 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed11g1774 919 MobiDBLite consensus disorder prediction 904 919 - -
Sed11g1774 919 MobiDBLite consensus disorder prediction 627 659 - -
Sed11g1774 919 MobiDBLite consensus disorder prediction 549 563 - -
Sed11g1774 919 MobiDBLite consensus disorder prediction 834 854 - -
Sed11g1774 919 Pfam PH domain 577 700 IPR001849 -
Sed11g1774 919 Pfam Dynamin family 40 204 IPR045063 -
Sed11g1774 919 PANTHER DYNAMIN 34 827 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Sed11g1774 919 MobiDBLite consensus disorder prediction 881 903 - -
Sed11g1774 919 Gene3D Dynamin, middle domain 720 810 - -
Sed11g1774 919 PRINTS Dynamin signature 62 79 IPR022812 -
Sed11g1774 919 PRINTS Dynamin signature 193 209 IPR022812 -
Sed11g1774 919 PRINTS Dynamin signature 37 55 IPR022812 -
Sed11g1774 919 PRINTS Dynamin signature 174 192 IPR022812 -
Sed11g1774 919 CDD DLP_1 40 304 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed11g1774 919 FunFam Dynamin-2A 330 537 - -
Sed11g1774 919 SUPERFAMILY PH domain-like 575 701 - -
Sed11g1774 919 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 34 304 IPR030381 GO:0005525(InterPro)
Sed11g1774 919 MobiDBLite consensus disorder prediction 834 919 - -
Sed11g1774 919 Pfam Dynamin GTPase effector domain 740 822 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed11g1774 919 FunFam Dynamin-2A 697 810 - -
Sed11g1774 919 FunFam Dynamin-2B isoform A 36 319 - -
Sed11g1774 919 ProSiteProfiles GED domain profile. 742 835 IPR020850 -
Sed11g1774 919 Coils Coil 796 816 - -
Sed11g1774 919 SMART PH_update 574 703 IPR001849 -
Sed11g1774 919 Gene3D Dynamin, middle domain 333 540 - -
Sed11g1774 919 MobiDBLite consensus disorder prediction 703 735 - -
Sed11g1774 919 Gene3D - 32 319 IPR027417 -
Sed11g1774 919 MobiDBLite consensus disorder prediction 504 569 - -
Sed11g1774 919 MobiDBLite consensus disorder prediction 634 651 - -
Sed11g1774 919 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 63 72 IPR019762 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1774 K01528 - - csv:101220753 1545.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1643 Sed-Chr10:32993177 Sed11g1774 Sed-Chr11:32702616 0.00E+00 dispersed
Sed11g1774 Sed-Chr11:32702616 Sed12g0315 Sed-Chr12:1916547 1.10E-57 dispersed
Sed11g1773 Sed-Chr11:32702616 Sed11g1774 Sed-Chr11:32702616 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69