Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1821 | ATGGGAGAGCCGAGTTCAATGGGAAGTCAAGGCGCTGCGACATCAAGCTATCGAGGCGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCCGAGATTCGCGAGCCGGGAAAAAAGACAAGAATTTGGTTGGGGAGTTTCGAGACCCAGGAGATGGCAGCATTGGCCTATGACACTGCTGCCTACCATTTCCGCGGTTGCGATGCCCGCCTCAACTTCCCTCATCTTGTTGACTCTCTCCCTTCCCCACTTGGCTCCTCCCCTAATGACATCCGCCTTGCTGCCCACGAGGCAGCATTGCGGGTACGAACAATGCCAGCCATTGCACCCGACAAAAGTGAGTCTTCTAGCTCGAGGATAGCCCCGGTCACCGTGCGGTTGTCTCCAAGCCAAATCCAGGCGATTAACGAGTCACCGTTGGACTCGCCAAAGATGTGGATGGAGGAGTTTTCGAATGCCACTGTGTTTGCGGATGATATGAACGATGAGATGTGGGAGAATATGCCTAATGACTCGTTGTGGGATCCTTAA | 528 | 53.79 | MGEPSSMGSQGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETQEMAALAYDTAAYHFRGCDARLNFPHLVDSLPSPLGSSPNDIRLAAHEAALRVRTMPAIAPDKSESSSSRIAPVTVRLSPSQIQAINESPLDSPKMWMEEFSNATVFADDMNDEMWENMPNDSLWDP | 175 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 33024469 | 33025224 | - | Sed0024076.1 | Sed11g1821 | 730467 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1821 | 175 | FunFam | Ethylene-responsive transcription factor 2 | 15 | 74 | - | - | |
Sed11g1821 | 175 | SUPERFAMILY | DNA-binding domain | 15 | 74 | IPR016177 | GO:0003677(InterPro) | |
Sed11g1821 | 175 | SMART | rav1_2 | 16 | 79 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1821 | 175 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 14 | 145 | IPR051032 | - | |
Sed11g1821 | 175 | CDD | AP2 | 15 | 75 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1821 | 175 | Gene3D | AP2/ERF domain | 16 | 75 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1821 | 175 | PRINTS | Ethylene responsive element binding protein signature | 17 | 28 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1821 | 175 | PRINTS | Ethylene responsive element binding protein signature | 39 | 55 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1821 | 175 | ProSiteProfiles | AP2/ERF domain profile. | 16 | 73 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1821 | 175 | Pfam | AP2 domain | 16 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2682 | Sed-Chr1:21493109 | Sed11g1821 | Sed-Chr11:33024469 | 1.10E-20 | dispersed | |
Sed10g1614 | Sed-Chr10:32751299 | Sed11g1821 | Sed-Chr11:33024469 | 2.50E-40 | dispersed | |
Sed11g1821 | Sed-Chr11:33024469 | Sed12g1396 | Sed-Chr12:11439726 | 8.40E-23 | dispersed | |
Sed10g1609 | Sed-Chr10:32648229 | Sed11g1821 | Sed-Chr11:33024469 | 2.90E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40020 | PF00847 | AP2 | 3.10E-13 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1821 | - | - | - | 0.0 |