Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1821 ATGGGAGAGCCGAGTTCAATGGGAAGTCAAGGCGCTGCGACATCAAGCTATCGAGGCGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCCGAGATTCGCGAGCCGGGAAAAAAGACAAGAATTTGGTTGGGGAGTTTCGAGACCCAGGAGATGGCAGCATTGGCCTATGACACTGCTGCCTACCATTTCCGCGGTTGCGATGCCCGCCTCAACTTCCCTCATCTTGTTGACTCTCTCCCTTCCCCACTTGGCTCCTCCCCTAATGACATCCGCCTTGCTGCCCACGAGGCAGCATTGCGGGTACGAACAATGCCAGCCATTGCACCCGACAAAAGTGAGTCTTCTAGCTCGAGGATAGCCCCGGTCACCGTGCGGTTGTCTCCAAGCCAAATCCAGGCGATTAACGAGTCACCGTTGGACTCGCCAAAGATGTGGATGGAGGAGTTTTCGAATGCCACTGTGTTTGCGGATGATATGAACGATGAGATGTGGGAGAATATGCCTAATGACTCGTTGTGGGATCCTTAA 528 53.79 MGEPSSMGSQGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETQEMAALAYDTAAYHFRGCDARLNFPHLVDSLPSPLGSSPNDIRLAAHEAALRVRTMPAIAPDKSESSSSRIAPVTVRLSPSQIQAINESPLDSPKMWMEEFSNATVFADDMNDEMWENMPNDSLWDP 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33024469 33025224 - Sed0024076.1 Sed11g1821 730467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1821 175 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Sed11g1821 175 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677(InterPro)
Sed11g1821 175 SMART rav1_2 16 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1821 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 145 IPR051032 -
Sed11g1821 175 CDD AP2 15 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1821 175 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1821 175 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1821 175 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1821 175 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1821 175 Pfam AP2 domain 16 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2682 Sed-Chr1:21493109 Sed11g1821 Sed-Chr11:33024469 1.10E-20 dispersed
Sed10g1614 Sed-Chr10:32751299 Sed11g1821 Sed-Chr11:33024469 2.50E-40 dispersed
Sed11g1821 Sed-Chr11:33024469 Sed12g1396 Sed-Chr12:11439726 8.40E-23 dispersed
Sed10g1609 Sed-Chr10:32648229 Sed11g1821 Sed-Chr11:33024469 2.90E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40020 PF00847 AP2 3.10E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1821 - - - 0.0