Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1822 ATGGAGGATCGCGAGGAAGAAGAGATAGCAGAAGAGGTGCAAGGTTCGAGCCTGACGATGGAGAAAGTGGCGGCGGCTAAGAAGTTTATAGAGAATCATTACAGAGCTCAGACGAAGAACATTCAAGAGCGGAAGGAGAGACGATGGATGTTGGAAAGAAAGTTAGCCTCCTCGGATGTGCCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGAAAAGAAACGGAGTTTATGCGACTCAAGAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATTATTGGCAGGGGAGCTTTTGGCGAGGTTCGATTATGTCGGGAGAAGAATTCTGGTGATATATATGCCATGAAAAAGTTGAAAAAATCTGAAATGGTGATGAGAGGACAGGTGGAACATGTTAGAGCCGAAAGGAATTTATTAGCAGAAGTTGCCAGCCATTGCATAGTGAAGCTGTATTACTCATTCCAGGACGCTGAGTACTTGTATTTGATTATGGAATATCTACCAGGTGGAGATATGATGACTCTGCTTATGAGAGAAGACACATTGACTGAAAATGTGGCCAAGTTTTACATTGCACAAAGTGTTCTTGCAATAGAATCTATTCACAGGCACAACTATATTCACAGGGATATTAAACCAGACAATCTTCTTTTGGACAAAAATGGTCACATGAAGCTTTCTGATTTTGGTCTCTGTAAGCCACTGGATTCTTTAACCCTATCAGCACTTCATGAAAATGAGGCCATGGATGATGAAGATTCGGCAGAACCAATGGATATTGATGATAACAGTAGTTGGAAGAGTGCCAGCGAACAGCTGCACCATTGGCAAATGAACCGGAGGAAGCTGGCATTTTCAACAGTTGGAACACCAGATTATATAGCTCCCGAAGTATTACTCAAAAAAGGATATGGGATGGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTATGAGATGCTCGTAGGCTACCCTCCATTTTACTCCGATGATCCAATCACCGCCTGCAGAAAGATTGTTCGTTGGAAAAATCACTTGAAGTTTCCAGAAGATGCTAAGTTGACAATTGAAGCAAAGGATCTCATTTGTAGGTTGCTTTGCGATGTTGAGCATAGACTTGGTACTGGAGGAGCATACCAAATAAAAGCTCATCCTTGGTTCAAAGACGTCGTCTGGGATAGGCTTTATGAAATGGATGCAGCATTTAAGCCCGAAGTCAATGGAGAGCTGGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAACGTGGCACAGGACCCTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTAGGGTATACATACAAGAACTTCGATGCTGTCAAAGGGCAACTTCATGGATCACTTGAGTCTCAGAGATTGTCAATGCAACAGCATCCAATTGACACATTAAATGGCACCGGGGGAGACTACACAGCCGAACTAATCGCCAACGATACTGAAATGCAGATGTTAGCAGTCTCATCAGGAGACCCCATGTTGCCATAA 1551 42.81 MEDREEEEIAEEVQGSSLTMEKVAAAKKFIENHYRAQTKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKNSGDIYAMKKLKKSEMVMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENEAMDDEDSAEPMDIDDNSSWKSASEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITACRKIVRWKNHLKFPEDAKLTIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMDAAFKPEVNGELDTQNFMKFDELDPPIPGKRGTGPSRKMLLTPKDLSFVGYTYKNFDAVKGQLHGSLESQRLSMQQHPIDTLNGTGGDYTAELIANDTEMQMLAVSSGDPMLP 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33038967 33047013 - Sed0021565.1 Sed11g1822 730468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1822 516 FunFam Non-specific serine/threonine protein kinase 53 175 - -
Sed11g1822 516 ProSiteProfiles Protein kinase domain profile. 92 392 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1822 516 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 460 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed11g1822 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g1822 516 FunFam Non-specific serine/threonine protein kinase 411 421 - -
Sed11g1822 516 FunFam Non-specific serine/threonine protein kinase 176 243 - -
Sed11g1822 516 ProSiteProfiles AGC-kinase C-terminal domain profile. 393 466 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1822 516 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524(InterPro)
Sed11g1822 516 SMART serkin_6 92 392 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1822 516 CDD STKc_NDR_like 90 457 - -
Sed11g1822 516 Pfam Protein kinase domain 93 242 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1822 516 Pfam Protein kinase domain 283 392 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1822 516 FunFam Non-specific serine/threonine protein kinase 291 410 - -
Sed11g1822 516 Pfam Protein kinase C terminal domain 411 456 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1822 516 Gene3D Phosphorylase Kinase; domain 1 90 421 - -
Sed11g1822 516 SMART pkinase_C_6 393 458 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1822 516 Gene3D Transferase(Phosphotransferase) domain 1 176 410 - -
Sed11g1822 516 SUPERFAMILY Protein kinase-like (PK-like) 76 430 IPR011009 -
Sed11g1822 516 CDD MobB_NDR_LATS-like 26 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1822 Sed-Chr11:33038967 Sed13g1884 Sed-Chr13:23834491 2.60E-258 dispersed
Sed11g1822 Sed-Chr11:33038967 Sed13g1883 Sed-Chr13:23834491 1.30E-281 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79923 PF00069 Pkinase 3.00E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1822 K08790 - csv:101212228 976.852