Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1822 | ATGGAGGATCGCGAGGAAGAAGAGATAGCAGAAGAGGTGCAAGGTTCGAGCCTGACGATGGAGAAAGTGGCGGCGGCTAAGAAGTTTATAGAGAATCATTACAGAGCTCAGACGAAGAACATTCAAGAGCGGAAGGAGAGACGATGGATGTTGGAAAGAAAGTTAGCCTCCTCGGATGTGCCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGAAAAGAAACGGAGTTTATGCGACTCAAGAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATTATTGGCAGGGGAGCTTTTGGCGAGGTTCGATTATGTCGGGAGAAGAATTCTGGTGATATATATGCCATGAAAAAGTTGAAAAAATCTGAAATGGTGATGAGAGGACAGGTGGAACATGTTAGAGCCGAAAGGAATTTATTAGCAGAAGTTGCCAGCCATTGCATAGTGAAGCTGTATTACTCATTCCAGGACGCTGAGTACTTGTATTTGATTATGGAATATCTACCAGGTGGAGATATGATGACTCTGCTTATGAGAGAAGACACATTGACTGAAAATGTGGCCAAGTTTTACATTGCACAAAGTGTTCTTGCAATAGAATCTATTCACAGGCACAACTATATTCACAGGGATATTAAACCAGACAATCTTCTTTTGGACAAAAATGGTCACATGAAGCTTTCTGATTTTGGTCTCTGTAAGCCACTGGATTCTTTAACCCTATCAGCACTTCATGAAAATGAGGCCATGGATGATGAAGATTCGGCAGAACCAATGGATATTGATGATAACAGTAGTTGGAAGAGTGCCAGCGAACAGCTGCACCATTGGCAAATGAACCGGAGGAAGCTGGCATTTTCAACAGTTGGAACACCAGATTATATAGCTCCCGAAGTATTACTCAAAAAAGGATATGGGATGGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTATGAGATGCTCGTAGGCTACCCTCCATTTTACTCCGATGATCCAATCACCGCCTGCAGAAAGATTGTTCGTTGGAAAAATCACTTGAAGTTTCCAGAAGATGCTAAGTTGACAATTGAAGCAAAGGATCTCATTTGTAGGTTGCTTTGCGATGTTGAGCATAGACTTGGTACTGGAGGAGCATACCAAATAAAAGCTCATCCTTGGTTCAAAGACGTCGTCTGGGATAGGCTTTATGAAATGGATGCAGCATTTAAGCCCGAAGTCAATGGAGAGCTGGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAACGTGGCACAGGACCCTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTAGGGTATACATACAAGAACTTCGATGCTGTCAAAGGGCAACTTCATGGATCACTTGAGTCTCAGAGATTGTCAATGCAACAGCATCCAATTGACACATTAAATGGCACCGGGGGAGACTACACAGCCGAACTAATCGCCAACGATACTGAAATGCAGATGTTAGCAGTCTCATCAGGAGACCCCATGTTGCCATAA | 1551 | 42.81 | MEDREEEEIAEEVQGSSLTMEKVAAAKKFIENHYRAQTKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKNSGDIYAMKKLKKSEMVMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENEAMDDEDSAEPMDIDDNSSWKSASEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITACRKIVRWKNHLKFPEDAKLTIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMDAAFKPEVNGELDTQNFMKFDELDPPIPGKRGTGPSRKMLLTPKDLSFVGYTYKNFDAVKGQLHGSLESQRLSMQQHPIDTLNGTGGDYTAELIANDTEMQMLAVSSGDPMLP | 516 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 33038967 | 33047013 | - | Sed0021565.1 | Sed11g1822 | 730468 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1822 | 516 | FunFam | Non-specific serine/threonine protein kinase | 53 | 175 | - | - | |
Sed11g1822 | 516 | ProSiteProfiles | Protein kinase domain profile. | 92 | 392 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g1822 | 516 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 22 | 460 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Sed11g1822 | 516 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 211 | 223 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed11g1822 | 516 | FunFam | Non-specific serine/threonine protein kinase | 411 | 421 | - | - | |
Sed11g1822 | 516 | FunFam | Non-specific serine/threonine protein kinase | 176 | 243 | - | - | |
Sed11g1822 | 516 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 393 | 466 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g1822 | 516 | ProSitePatterns | Protein kinases ATP-binding region signature. | 98 | 121 | IPR017441 | GO:0005524(InterPro) | |
Sed11g1822 | 516 | SMART | serkin_6 | 92 | 392 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g1822 | 516 | CDD | STKc_NDR_like | 90 | 457 | - | - | |
Sed11g1822 | 516 | Pfam | Protein kinase domain | 93 | 242 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g1822 | 516 | Pfam | Protein kinase domain | 283 | 392 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g1822 | 516 | FunFam | Non-specific serine/threonine protein kinase | 291 | 410 | - | - | |
Sed11g1822 | 516 | Pfam | Protein kinase C terminal domain | 411 | 456 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g1822 | 516 | Gene3D | Phosphorylase Kinase; domain 1 | 90 | 421 | - | - | |
Sed11g1822 | 516 | SMART | pkinase_C_6 | 393 | 458 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g1822 | 516 | Gene3D | Transferase(Phosphotransferase) domain 1 | 176 | 410 | - | - | |
Sed11g1822 | 516 | SUPERFAMILY | Protein kinase-like (PK-like) | 76 | 430 | IPR011009 | - | |
Sed11g1822 | 516 | CDD | MobB_NDR_LATS-like | 26 | 87 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g1822 | Sed-Chr11:33038967 | Sed13g1884 | Sed-Chr13:23834491 | 2.60E-258 | dispersed | |
Sed11g1822 | Sed-Chr11:33038967 | Sed13g1883 | Sed-Chr13:23834491 | 1.30E-281 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79923 | PF00069 | Pkinase | 3.00E-43 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1822 | K08790 | - | csv:101212228 | 976.852 |