Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1830 ATGGGGGGTTCTGGGAAATGGATGAAGGTTCTTATGGGACATAAGAAATCTGATAAGGAAGACAATGAGAAGTTGGGGAGTAAAGGTAAGAAATGGAGGCTATGGAGGAGTTCATCAGGGGATGTGAGCTCTGTTTGGAAGGGTTATAAAGGGGTACATAGAGCAGCTTCTGAATGCTCTGATTCCCCTAGACTGGCTGATTCTTTTAACGCCGCTGTCGCTACTGTCCTCCGTGCTCCGCCGAAAGATTTCAGGGTTGTCCGCCAAGAATGGGCTGCTATTCGAATCCAAACTGCTTTCCGCGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTTTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTCACACTGAGGTGCATGCAGGCTCTCGTTCGAGTTCAAGCTCGAATTAGGGCCCGTCGTGTGAGGATGTCTGTCGAGGGGCAGGCCGTGCAGCAATTGCTTGATGTACATCGCAGCAAGGCTGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAAACAAAGTTACAAATGAGGCAAGATGGAGCACTTAAGAGGGAGAGAGCAATTGCATACTCCCTTGTTCAAAAGCAATTGAAGGCGAAGTCAAGTGCAACTTCGTGTACAAATGTATCGGTTTACGCTCTTAAGAATTACGAGTTTGACAAGAACAACTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCTAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGTACCGATTCCATTGATGTCACTCCACATTCAAAGACCTGTACAGATTCTGTGTCTAAACATTCCAAAGCTTCTGAATCAAGTTTGGTGAAAGTCAGGAAGAACAATGTATCAACTAGGATATCTGCTAAACCTCCTTCAAGTGTGCAAGCTCATTCTTGTTCTAGCCCGAGTTCAGATTTCTGGTATGATGAGAGCTCTGCTTCATCTTCAATCTGCACATCGACAACTCCAGTTTCGGGGCATGCTTCTTCAACCATAGAAAGAACAGAGAATAGCAGTTACAGTAAGCCGAGTTACATGAATCTCACTGAGTCGACAAAGGCGAAGCAAAAGGCAAATAGTCAGTTACACAGAGTTCAAAGGCAGTCCATGGATGAGTATCAATTCCTTCAGAAGTCAGAAGCTTTCTTAAATGGGGATTCTAAGAGTAGTGCTGGCTCTTATGCATCAGTCAACCCTTTTAAGCCATTGGTGATGCCAACACGAATGGATAAGAATGGAACAAAGCTAAGGACATGA 1329 46.2 MGGSGKWMKVLMGHKKSDKEDNEKLGSKGKKWRLWRSSSGDVSSVWKGYKGVHRAASECSDSPRLADSFNAAVATVLRAPPKDFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARIRARRVRMSVEGQAVQQLLDVHRSKADLLKQAEEGWCDSKGTLEDIKTKLQMRQDGALKRERAIAYSLVQKQLKAKSSATSCTNVSVYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTDSIDVTPHSKTCTDSVSKHSKASESSLVKVRKNNVSTRISAKPPSSVQAHSCSSPSSDFWYDESSASSSICTSTTPVSGHASSTIERTENSSYSKPSYMNLTESTKAKQKANSQLHRVQRQSMDEYQFLQKSEAFLNGDSKSSAGSYASVNPFKPLVMPTRMDKNGTKLRT 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33109301 33113422 + Sed0026456.1 Sed11g1830 730476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1830 442 MobiDBLite consensus disorder prediction 270 323 - -
Sed11g1830 442 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515(InterPro)
Sed11g1830 442 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515(InterPro)
Sed11g1830 442 SMART iq_5 111 132 IPR000048 GO:0005515(InterPro)
Sed11g1830 442 SMART iq_5 88 110 IPR000048 GO:0005515(InterPro)
Sed11g1830 442 ProSiteProfiles IQ motif profile. 113 140 - -
Sed11g1830 442 Coils Coil 372 392 - -
Sed11g1830 442 MobiDBLite consensus disorder prediction 269 323 - -
Sed11g1830 442 ProSiteProfiles IQ motif profile. 89 117 - -
Sed11g1830 442 MobiDBLite consensus disorder prediction 339 367 - -
Sed11g1830 442 FunFam IQ-domain 11 88 139 - -
Sed11g1830 442 PANTHER IQ-DOMAIN 5-RELATED 6 392 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1170 Sed-Chr8:24136134 Sed11g1830 Sed-Chr11:33109301 3.90E-37 dispersed
Sed11g1830 Sed-Chr11:33109301 Sed13g1871 Sed-Chr13:23712252 8.60E-165 dispersed
Sed11g1830 Sed-Chr11:33109301 Sed13g1870 Sed-Chr13:23712252 2.00E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1830 - - - 0.0