Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1830 ATGGGGGGTTCTGGGAAATGGATGAAGGTTCTTATGGGACATAAGAAATCTGATAAGGAAGACAATGAGAAGTTGGGGAGTAAAGGTAAGAAATGGAGGCTATGGAGGAGTTCATCAGGGGATGTGAGCTCTGTTTGGAAGGGTTATAAAGGGGTACATAGAGCAGCTTCTGAATGCTCTGATTCCCCTAGACTGGCTGATTCTTTTAACGCCGCTGTCGCTACTGTCCTCCGTGCTCCGCCGAAAGATTTCAGGGTTGTCCGCCAAGAATGGGCTGCTATTCGAATCCAAACTGCTTTCCGCGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTTTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTCACACTGAGGTGCATGCAGGCTCTCGTTCGAGTTCAAGCTCGAATTAGGGCCCGTCGTGTGAGGATGTCTGTCGAGGGGCAGGCCGTGCAGCAATTGCTTGATGTACATCGCAGCAAGGCTGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAAACAAAGTTACAAATGAGGCAAGATGGAGCACTTAAGAGGGAGAGAGCAATTGCATACTCCCTTGTTCAAAAGCAATTGAAGGCGAAGTCAAGTGCAACTTCGTGTACAAATGTATCGGTTTACGCTCTTAAGAATTACGAGTTTGACAAGAACAACTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCTAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGTACCGATTCCATTGATGTCACTCCACATTCAAAGACCTGTACAGATTCTGTGTCTAAACATTCCAAAGCTTCTGAATCAAGTTTGGTGAAAGTCAGGAAGAACAATGTATCAACTAGGATATCTGCTAAACCTCCTTCAAGTGTGCAAGCTCATTCTTGTTCTAGCCCGAGTTCAGATTTCTGGTATGATGAGAGCTCTGCTTCATCTTCAATCTGCACATCGACAACTCCAGTTTCGGGGCATGCTTCTTCAACCATAGAAAGAACAGAGAATAGCAGTTACAGTAAGCCGAGTTACATGAATCTCACTGAGTCGACAAAGGCGAAGCAAAAGGCAAATAGTCAGTTACACAGAGTTCAAAGGCAGTCCATGGATGAGTATCAATTCCTTCAGAAGTCAGAAGCTTTCTTAAATGGGGATTCTAAGAGTAGTGCTGGCTCTTATGCATCAGTCAACCCTTTTAAGCCATTGGTGATGCCAACACGAATGGATAAGAATGGAACAAAGCTAAGGACATGA 1329 46.2 MGGSGKWMKVLMGHKKSDKEDNEKLGSKGKKWRLWRSSSGDVSSVWKGYKGVHRAASECSDSPRLADSFNAAVATVLRAPPKDFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARIRARRVRMSVEGQAVQQLLDVHRSKADLLKQAEEGWCDSKGTLEDIKTKLQMRQDGALKRERAIAYSLVQKQLKAKSSATSCTNVSVYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTDSIDVTPHSKTCTDSVSKHSKASESSLVKVRKNNVSTRISAKPPSSVQAHSCSSPSSDFWYDESSASSSICTSTTPVSGHASSTIERTENSSYSKPSYMNLTESTKAKQKANSQLHRVQRQSMDEYQFLQKSEAFLNGDSKSSAGSYASVNPFKPLVMPTRMDKNGTKLRT 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33109301 33113422 + Sed0026456.1 Sed11g1830 730476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1830 442 MobiDBLite consensus disorder prediction 270 323 - -
Sed11g1830 442 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515(InterPro)
Sed11g1830 442 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515(InterPro)
Sed11g1830 442 SMART iq_5 111 132 IPR000048 GO:0005515(InterPro)
Sed11g1830 442 SMART iq_5 88 110 IPR000048 GO:0005515(InterPro)
Sed11g1830 442 ProSiteProfiles IQ motif profile. 113 140 - -
Sed11g1830 442 Coils Coil 372 392 - -
Sed11g1830 442 MobiDBLite consensus disorder prediction 269 323 - -
Sed11g1830 442 ProSiteProfiles IQ motif profile. 89 117 - -
Sed11g1830 442 MobiDBLite consensus disorder prediction 339 367 - -
Sed11g1830 442 FunFam IQ-domain 11 88 139 - -
Sed11g1830 442 PANTHER IQ-DOMAIN 5-RELATED 6 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1830 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1170 Sed-Chr8:24136134 Sed11g1830 Sed-Chr11:33109301 3.90E-37 dispersed
Sed11g1830 Sed-Chr11:33109301 Sed13g1871 Sed-Chr13:23712252 8.60E-165 dispersed
Sed11g1830 Sed-Chr11:33109301 Sed13g1870 Sed-Chr13:23712252 2.00E-177 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g2817 . 1 472 IQD Protein Family AT3G52290 53.3 1.4e-100 364.4
Sed01g2818 . 1 472 IQD Protein Family AT3G52290 53.3 1.4e-100 364.4
Sed03g0040 . 1 451 IQD Protein Family AT3G52290 53.1 5.7e-89 325.9
Sed03g0042 . 1 451 IQD Protein Family AT3G52290 53.1 5.7e-89 325.9
Sed03g0041 . 2 172 IQD Protein Family AT2G26410 57.6 1.2e-40 165.6
Sed03g0043 . 2 172 IQD Protein Family AT2G26410 57.6 1.2e-40 165.6
Sed07g2286 . 84 258 IQD Protein Family AT2G26410 50.6 1.9e-38 158.3
Sed08g1171 . 1 407 IQD Protein Family AT3G22190 55.5 1.1e-92 338.2
Sed08g1170 . 1 407 IQD Protein Family AT3G22190 55.5 1.1e-92 338.2
Sed12g1498 . 1 398 IQD Protein Family AT3G22190 56.3 4.7e-88 322.8
Sed13g1870 . 1 437 IQD Protein Family AT2G26180 61.0 3.3e-118 422.9
Sed13g1871 . 11 425 IQD Protein Family AT2G26180 61.4 1.1e-110 397.9
Sed11g1830 . 1 435 IQD Protein Family AT2G26180 55.2 7.0e-100 362.1
Sed10g0264 . 1 271 IQD Protein Family AT2G33990 52.3 3.5e-65 246.1
Sed14g1502 . 1 281 IQD Protein Family AT2G33990 51.2 1.5e-63 240.7
Sed14g1502 . 1 237 IQD Protein Family AT3G15050 52.3 1.4e-58 224.2
Sed04g1560 . 43 216 IQD Protein Family AT3G15050 62.7 8.0e-54 208.4
Sed09g0603 . 1 499 IQD Protein Family AT4G00820 51.5 9.8e-115 411.8
Sed09g0603 . 1 499 IQD Protein Family AT1G01110 50.5 7.7e-112 402.1
Sed09g1621 . 1 396 IQD Protein Family AT3G16490 52.7 9.5e-75 278.5
Sed07g1415 . 1 393 IQD Protein Family AT3G16490 51.4 1.0e-68 258.5
Sed08g0818 . 1 356 IQD Protein Family AT3G16490 52.6 6.8e-65 245.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39