Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1836 ATGTCGAGAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGAGGGCTAAATGAGCACCAGCGATTGAGCCACGCCGGACCCAGTTCGAACCCTAGTCCCAGCCCTAGCCCTAGCCCGAGCCCTAGTCCATTGGAGGCCGTTGAATCGCCTTCTGCTGGGGATGTGGCGGCCGCTGCCTGCCTCGATTTCAATGCCTTGGAGGAGGAGTTTCAGGTGCAATTGGCTATGGCGATTAGCGTTTCCGATCCCGATTCGAGACGAGACACCGAGTCCGCTCAGATCGATGCTGCTAAGCGGATGAGCCTTGGCTGTTCGCCTACAGTCTCTGGCAGTCAAGCCCTAGCTGAATTTCTCTCGCTTCAGTATTGGAGCTATAATGTTGTAAATTATGATGAAAAAGTAATGGATGGATTTTATGACTTATACGGTATTACTACAAATTCTAGCACCCGAGGAAAGATGCCACAGTTAGTTGATCTTAAAGAAATATGTGTTACAAGTGATATTGATTATGAAGTGATTTTAGTGAACTGCGTGCTTGATCCTGAACTTCAACGGTTGGAGAGACAAGCATATAACATATTCATGAACTGCAGAGTTTCTGAATATGGCTTAAGTGGCCTGGTTCAAAAAATTGCTGATATAGTTGTTGCAAGAATGGGTGGTCCTGTTGGTGATGCTGAAGAAATGTTGAGAAGGTGGACCCTCAGAAGTTATGAGTTGCGTAGTTCTCTAAACACAATTATTCTTCCGCTTGGACGCCTTGATATTGGACTTGCACGTCATAGAGCTTTACTTTTTAAGGTACTAGCTGATAGGATTAATCTTCCATGCAAACTTGTCAAAGGAAGCTACTACACTGGTACTGATGATGGAGCTGTGAATATGATCAAAATTGACAATGGAAGTGAATATATTATCGATCTTATGGGTGCTCCTGGGACGCTAATTCCCTCAGAGGCGCCAAGCTGTCAATTTTCGAATTATGGCTTTGATAGGAGACCCGCAGATGCTATAACAGTTCCTGAAGATATGCCAGTATTACAAAATGAAGGAGCTGAAGCTGTGTCGATTTCATCTACTCAAGTTGGAGTAGCAAATGTTTGCAACTTAATATCCAAAGAAGCTTCAGATATGGGTGTTCAATCAAAAGAATCCGATAGGAACTTTATTGAAGAAATTCAACTTGGGAGTTCTGATTATGATTTTGGGAAGCTTCTAGAATCAGAAAGCAGTGCATGTGCACAGTCAGCATCTGAACAAAAGAAGAAAGTTAAAAAAGTATCCAAGTATGTTATAAGTGCTGCAAAGAACCCAGAGTTTGCACAGAAATTACATGCTGTCTTATTAGAGAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATAGATTCACAGGGAAATGGTCAAAACAAAGCAATTCATCAACTGCATCCAATCAATGGAAAAGGCATGGATGTTGGGCTTCAGTGCAACCCTTTTGTGTTAGCAAGCCGGGGACAGTCTTCTATTACTTCTACTGAGGCAGAGTATTTGAACAATGTTGACCATGATAACAAGGAAAAAGCGTTTACCGACGGATCAACAGAACAAAACCCTGAGACAAATGTGAACAAACACGGCTTATATTGGCCTCACAGTATGACAACTGACGGTTTTGTGTTTGTTGATGCCAACGGTGAAGCAGGCAAATTGGTTGATGTTAATGGAAATTTGTATCATGAACATGTGGATGGTGTTTCATTAACCTCTGATGTCAACTCTCAACAAAAACATCTAGGAAGTGCCTTAGTGGATGAAGAAAGAAGATGGTTGCCAGATAAGAGTGGTGGAACTCTTCAGTGCTATGATTTTCTAAAAAATCTATCGGAAAATTTGATAGAACTCGATCATAGTAACCCGCATGCTACTGATGGCCACAGTGAGACAATTAACCCAATATTAGGTGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTTCACATTGGTGAACGTATTGGCATTGGCTCATATGGCGAGGTTTATCGAGCAGATTGGAATGGCACTGAAGTTGCCGTGAAGAAGTTCTTGGACCAAGATTTTTCCGGTGCTGCTTTGGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGACTGAGGCACCCTAATGTTGTCCTTTTCATGGGAGCGGTCACTCGCCCTCCTCATTTCTCTATCCTTACAGAGTTCCTTCCCGGGGGAAGTTTGTACAGGTTACTCCATCGTCCCAATTCTCAACTTGATGAAAGGAGGCGATTGAGAATGGCTCTCGATGTGGCCAAAGGAATGAACTACTTGCACACAAGTCATCCGACCATTGTTCACAGAGATCTAAAGTCTCCCAATCTCCTTGTTGACAAAAACTGGGTTGTCAAGGTTTGTGATTTTGGTTTGTCACGTGTCAAGCAGAACACATTTCTGTCTTCAAAGTCAACTGCTGGAACGCCTGAATGGATGGCACCAGAAGTTCTAAGGAATGAACCGGCGAACGAAAAGTGCGATGTGTATAGCTTTGGTGTGATATTGTGGGAGTTGACGACGTGCCGCGTTCCGTGGAAAGGTTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAGAACAGGCGACTAGAAATTCCAGAAGATGTTGATCCAGCAGTTGCACAGATCATTTGTGATTGTTGGCAAACGGACTCCAAACTGAGGCCGTCGTTCTCTCAGCTTATTACTCGATTGCGACGCCTTCAACGGCTTGTTCAAACAAACTCCGGGAATCTAATACCGGAATGA 2799 43.37 MSRMKHLLRKLHIGGGLNEHQRLSHAGPSSNPSPSPSPSPSPSPLEAVESPSAGDVAAAACLDFNALEEEFQVQLAMAISVSDPDSRRDTESAQIDAAKRMSLGCSPTVSGSQALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITTNSSTRGKMPQLVDLKEICVTSDIDYEVILVNCVLDPELQRLERQAYNIFMNCRVSEYGLSGLVQKIADIVVARMGGPVGDAEEMLRRWTLRSYELRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCKLVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSCQFSNYGFDRRPADAITVPEDMPVLQNEGAEAVSISSTQVGVANVCNLISKEASDMGVQSKESDRNFIEEIQLGSSDYDFGKLLESESSACAQSASEQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQGNGQNKAIHQLHPINGKGMDVGLQCNPFVLASRGQSSITSTEAEYLNNVDHDNKEKAFTDGSTEQNPETNVNKHGLYWPHSMTTDGFVFVDANGEAGKLVDVNGNLYHEHVDGVSLTSDVNSQQKHLGSALVDEERRWLPDKSGGTLQCYDFLKNLSENLIELDHSNPHATDGHSETINPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDFSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPGGSLYRLLHRPNSQLDERRRLRMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCRVPWKGLNPMQVVGAVGFQNRRLEIPEDVDPAVAQIICDCWQTDSKLRPSFSQLITRLRRLQRLVQTNSGNLIPE 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33151905 33160896 + Sed0014622.1 Sed11g1836 730482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1836 932 FunFam Serine/threonine-protein kinase isoform 1 654 741 - -
Sed11g1836 932 Gene3D Transferase(Phosphotransferase) domain 1 742 927 - -
Sed11g1836 932 CDD STKc_MAP3K-like 669 915 - -
Sed11g1836 932 MobiDBLite consensus disorder prediction 31 45 - -
Sed11g1836 932 SMART serkin_6 663 922 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1836 932 Gene3D Phosphorylase Kinase; domain 1 656 740 - -
Sed11g1836 932 FunFam Serine/threonine-protein kinase CTR1 742 925 - -
Sed11g1836 932 ProSitePatterns Protein kinases ATP-binding region signature. 669 691 IPR017441 GO:0005524(InterPro)
Sed11g1836 932 SUPERFAMILY Protein kinase-like (PK-like) 644 913 IPR011009 -
Sed11g1836 932 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g1836 932 Pfam Protein tyrosine and serine/threonine kinase 663 915 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g1836 932 ProSiteProfiles Protein kinase domain profile. 663 922 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1836 932 Pfam Ethylene-responsive protein kinase Le-CTR1 116 318 - -
Sed11g1836 932 PRINTS Tyrosine kinase catalytic domain signature 776 794 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g1836 932 PRINTS Tyrosine kinase catalytic domain signature 737 750 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g1836 932 PRINTS Tyrosine kinase catalytic domain signature 823 833 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g1836 932 PRINTS Tyrosine kinase catalytic domain signature 886 908 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g1836 932 PRINTS Tyrosine kinase catalytic domain signature 842 864 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g1836 932 MobiDBLite consensus disorder prediction 15 50 - -
Sed11g1836 932 PANTHER SERINE-THREONINE PROTEIN KINASE 111 918 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1836 Sed-Chr11:33151905 Sed13g1530 Sed-Chr13:20455131 2.60E-115 dispersed
Sed01g1761 Sed-Chr1:12837417 Sed11g1836 Sed-Chr11:33151905 1.20E-185 transposed
Sed08g1279 Sed-Chr8:26541443 Sed11g1836 Sed-Chr11:33151905 5.60E-190 transposed
Sed09g0310 Sed-Chr9:2768530 Sed11g1836 Sed-Chr11:33151905 6.00E-97 transposed
Sed11g1836 Sed-Chr11:33151905 Sed13g1856 Sed-Chr13:23515876 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79924 PF07714 PK_Tyr_Ser-Thr 3.30E-65 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1836 K04424 - csv:101214554 1507.66