Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1836 | ATGTCGAGAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGAGGGCTAAATGAGCACCAGCGATTGAGCCACGCCGGACCCAGTTCGAACCCTAGTCCCAGCCCTAGCCCTAGCCCGAGCCCTAGTCCATTGGAGGCCGTTGAATCGCCTTCTGCTGGGGATGTGGCGGCCGCTGCCTGCCTCGATTTCAATGCCTTGGAGGAGGAGTTTCAGGTGCAATTGGCTATGGCGATTAGCGTTTCCGATCCCGATTCGAGACGAGACACCGAGTCCGCTCAGATCGATGCTGCTAAGCGGATGAGCCTTGGCTGTTCGCCTACAGTCTCTGGCAGTCAAGCCCTAGCTGAATTTCTCTCGCTTCAGTATTGGAGCTATAATGTTGTAAATTATGATGAAAAAGTAATGGATGGATTTTATGACTTATACGGTATTACTACAAATTCTAGCACCCGAGGAAAGATGCCACAGTTAGTTGATCTTAAAGAAATATGTGTTACAAGTGATATTGATTATGAAGTGATTTTAGTGAACTGCGTGCTTGATCCTGAACTTCAACGGTTGGAGAGACAAGCATATAACATATTCATGAACTGCAGAGTTTCTGAATATGGCTTAAGTGGCCTGGTTCAAAAAATTGCTGATATAGTTGTTGCAAGAATGGGTGGTCCTGTTGGTGATGCTGAAGAAATGTTGAGAAGGTGGACCCTCAGAAGTTATGAGTTGCGTAGTTCTCTAAACACAATTATTCTTCCGCTTGGACGCCTTGATATTGGACTTGCACGTCATAGAGCTTTACTTTTTAAGGTACTAGCTGATAGGATTAATCTTCCATGCAAACTTGTCAAAGGAAGCTACTACACTGGTACTGATGATGGAGCTGTGAATATGATCAAAATTGACAATGGAAGTGAATATATTATCGATCTTATGGGTGCTCCTGGGACGCTAATTCCCTCAGAGGCGCCAAGCTGTCAATTTTCGAATTATGGCTTTGATAGGAGACCCGCAGATGCTATAACAGTTCCTGAAGATATGCCAGTATTACAAAATGAAGGAGCTGAAGCTGTGTCGATTTCATCTACTCAAGTTGGAGTAGCAAATGTTTGCAACTTAATATCCAAAGAAGCTTCAGATATGGGTGTTCAATCAAAAGAATCCGATAGGAACTTTATTGAAGAAATTCAACTTGGGAGTTCTGATTATGATTTTGGGAAGCTTCTAGAATCAGAAAGCAGTGCATGTGCACAGTCAGCATCTGAACAAAAGAAGAAAGTTAAAAAAGTATCCAAGTATGTTATAAGTGCTGCAAAGAACCCAGAGTTTGCACAGAAATTACATGCTGTCTTATTAGAGAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATAGATTCACAGGGAAATGGTCAAAACAAAGCAATTCATCAACTGCATCCAATCAATGGAAAAGGCATGGATGTTGGGCTTCAGTGCAACCCTTTTGTGTTAGCAAGCCGGGGACAGTCTTCTATTACTTCTACTGAGGCAGAGTATTTGAACAATGTTGACCATGATAACAAGGAAAAAGCGTTTACCGACGGATCAACAGAACAAAACCCTGAGACAAATGTGAACAAACACGGCTTATATTGGCCTCACAGTATGACAACTGACGGTTTTGTGTTTGTTGATGCCAACGGTGAAGCAGGCAAATTGGTTGATGTTAATGGAAATTTGTATCATGAACATGTGGATGGTGTTTCATTAACCTCTGATGTCAACTCTCAACAAAAACATCTAGGAAGTGCCTTAGTGGATGAAGAAAGAAGATGGTTGCCAGATAAGAGTGGTGGAACTCTTCAGTGCTATGATTTTCTAAAAAATCTATCGGAAAATTTGATAGAACTCGATCATAGTAACCCGCATGCTACTGATGGCCACAGTGAGACAATTAACCCAATATTAGGTGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTTCACATTGGTGAACGTATTGGCATTGGCTCATATGGCGAGGTTTATCGAGCAGATTGGAATGGCACTGAAGTTGCCGTGAAGAAGTTCTTGGACCAAGATTTTTCCGGTGCTGCTTTGGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGACTGAGGCACCCTAATGTTGTCCTTTTCATGGGAGCGGTCACTCGCCCTCCTCATTTCTCTATCCTTACAGAGTTCCTTCCCGGGGGAAGTTTGTACAGGTTACTCCATCGTCCCAATTCTCAACTTGATGAAAGGAGGCGATTGAGAATGGCTCTCGATGTGGCCAAAGGAATGAACTACTTGCACACAAGTCATCCGACCATTGTTCACAGAGATCTAAAGTCTCCCAATCTCCTTGTTGACAAAAACTGGGTTGTCAAGGTTTGTGATTTTGGTTTGTCACGTGTCAAGCAGAACACATTTCTGTCTTCAAAGTCAACTGCTGGAACGCCTGAATGGATGGCACCAGAAGTTCTAAGGAATGAACCGGCGAACGAAAAGTGCGATGTGTATAGCTTTGGTGTGATATTGTGGGAGTTGACGACGTGCCGCGTTCCGTGGAAAGGTTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAGAACAGGCGACTAGAAATTCCAGAAGATGTTGATCCAGCAGTTGCACAGATCATTTGTGATTGTTGGCAAACGGACTCCAAACTGAGGCCGTCGTTCTCTCAGCTTATTACTCGATTGCGACGCCTTCAACGGCTTGTTCAAACAAACTCCGGGAATCTAATACCGGAATGA | 2799 | 43.37 | MSRMKHLLRKLHIGGGLNEHQRLSHAGPSSNPSPSPSPSPSPSPLEAVESPSAGDVAAAACLDFNALEEEFQVQLAMAISVSDPDSRRDTESAQIDAAKRMSLGCSPTVSGSQALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITTNSSTRGKMPQLVDLKEICVTSDIDYEVILVNCVLDPELQRLERQAYNIFMNCRVSEYGLSGLVQKIADIVVARMGGPVGDAEEMLRRWTLRSYELRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCKLVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSCQFSNYGFDRRPADAITVPEDMPVLQNEGAEAVSISSTQVGVANVCNLISKEASDMGVQSKESDRNFIEEIQLGSSDYDFGKLLESESSACAQSASEQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQGNGQNKAIHQLHPINGKGMDVGLQCNPFVLASRGQSSITSTEAEYLNNVDHDNKEKAFTDGSTEQNPETNVNKHGLYWPHSMTTDGFVFVDANGEAGKLVDVNGNLYHEHVDGVSLTSDVNSQQKHLGSALVDEERRWLPDKSGGTLQCYDFLKNLSENLIELDHSNPHATDGHSETINPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDFSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPGGSLYRLLHRPNSQLDERRRLRMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCRVPWKGLNPMQVVGAVGFQNRRLEIPEDVDPAVAQIICDCWQTDSKLRPSFSQLITRLRRLQRLVQTNSGNLIPE | 932 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 33151905 | 33160896 | + | Sed0014622.1 | Sed11g1836 | 730482 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1836 | 932 | FunFam | Serine/threonine-protein kinase isoform 1 | 654 | 741 | - | - | |
Sed11g1836 | 932 | Gene3D | Transferase(Phosphotransferase) domain 1 | 742 | 927 | - | - | |
Sed11g1836 | 932 | CDD | STKc_MAP3K-like | 669 | 915 | - | - | |
Sed11g1836 | 932 | MobiDBLite | consensus disorder prediction | 31 | 45 | - | - | |
Sed11g1836 | 932 | SMART | serkin_6 | 663 | 922 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g1836 | 932 | Gene3D | Phosphorylase Kinase; domain 1 | 656 | 740 | - | - | |
Sed11g1836 | 932 | FunFam | Serine/threonine-protein kinase CTR1 | 742 | 925 | - | - | |
Sed11g1836 | 932 | ProSitePatterns | Protein kinases ATP-binding region signature. | 669 | 691 | IPR017441 | GO:0005524(InterPro) | |
Sed11g1836 | 932 | SUPERFAMILY | Protein kinase-like (PK-like) | 644 | 913 | IPR011009 | - | |
Sed11g1836 | 932 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 782 | 794 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed11g1836 | 932 | Pfam | Protein tyrosine and serine/threonine kinase | 663 | 915 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed11g1836 | 932 | ProSiteProfiles | Protein kinase domain profile. | 663 | 922 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g1836 | 932 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 116 | 318 | - | - | |
Sed11g1836 | 932 | PRINTS | Tyrosine kinase catalytic domain signature | 776 | 794 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed11g1836 | 932 | PRINTS | Tyrosine kinase catalytic domain signature | 737 | 750 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed11g1836 | 932 | PRINTS | Tyrosine kinase catalytic domain signature | 823 | 833 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed11g1836 | 932 | PRINTS | Tyrosine kinase catalytic domain signature | 886 | 908 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed11g1836 | 932 | PRINTS | Tyrosine kinase catalytic domain signature | 842 | 864 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed11g1836 | 932 | MobiDBLite | consensus disorder prediction | 15 | 50 | - | - | |
Sed11g1836 | 932 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 111 | 918 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g1836 | Sed-Chr11:33151905 | Sed13g1530 | Sed-Chr13:20455131 | 2.60E-115 | dispersed | |
Sed01g1761 | Sed-Chr1:12837417 | Sed11g1836 | Sed-Chr11:33151905 | 1.20E-185 | transposed | |
Sed08g1279 | Sed-Chr8:26541443 | Sed11g1836 | Sed-Chr11:33151905 | 5.60E-190 | transposed | |
Sed09g0310 | Sed-Chr9:2768530 | Sed11g1836 | Sed-Chr11:33151905 | 6.00E-97 | transposed | |
Sed11g1836 | Sed-Chr11:33151905 | Sed13g1856 | Sed-Chr13:23515876 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79924 | PF07714 | PK_Tyr_Ser-Thr | 3.30E-65 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1836 | K04424 | - | csv:101214554 | 1507.66 |