Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1865 ATGGAGGATTACAATAACCATCTAAACCAAAACTCAAATCCCAGACAAAATTTCTTGTACTCATCATCATCCGGTAATTTCGGAACATCAAGCAATCCGACGGCTGAGATGAGTCCCAATTCGTTTCACCTTCATCAAGGATCCGATTGTAGTTTTCAAAACGACAAATCGTATCCAACCGTCAAGACTGAAGCCAGTACTTCCCATCACCAACAACACCAAGCTCTCAAATTTCACTTCCAAAGACAGCCGCCGCCTACATGTCGTCCCGATGAAAACGGCGTCGTTGATGTTGAAGCGATTAAGGCTAAAATTATTGCTCATCCTCAATACTCTAGCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCAGCTGGTGGCGGTCCGGCAAGAATTTGAAGAACAGAAGCGATCTTCCATGGTTGCCGGAGAGACCACAAAGGATCCAGAACTTGATCAATTTATGGAAGCTTATTACGACACGTTGGTGAAATATCGAGAGGAACTTACGAGGCCGATTCAAGAAGCCATGGATTTCATGCGAAGGATCGAATCTCAGCTCAGTTCTCTCTGTAACAGCCCAATTCGGATCTTCAATTCTGATGAGAAAAGCGATGTTATCGGATCGTCCGAGGAGGAACAAGACAATAGCGGCAGAGAAACCGAGCTTCCGGAGATCGATCCACGAGCAGAAGACAGAGAATTGAAGAACCATCTGTTGAAGAAGTACAGTGGTTTCCTGGGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAGAAAGGCAAACTCCCAAAAGATGCAAGGCAGAAACTTCTTAATTGGTGGGAGTTACATTTCAAATGGCCATACCCTTCTGAAACAGAGAAGGTTGCATTGGCTGAATCCACTGGATTGGATCAGAAGCAAATAAACAACTGGTTCATTAACCAAAGGAAGAGACATTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGTCTTCATCCTTCCAATGGCACGCTCTATATCGATGGTCACTACATAACCGATGGCCATTATCGACTCCGACCGTGA 1086 45.21 MEDYNNHLNQNSNPRQNFLYSSSSGNFGTSSNPTAEMSPNSFHLHQGSDCSFQNDKSYPTVKTEASTSHHQQHQALKFHFQRQPPPTCRPDENGVVDVEAIKAKIIAHPQYSSLLEAYMECQKVGAPPQVVEQLVAVRQEFEEQKRSSMVAGETTKDPELDQFMEAYYDTLVKYREELTRPIQEAMDFMRRIESQLSSLCNSPIRIFNSDEKSDVIGSSEEEQDNSGRETELPEIDPRAEDRELKNHLLKKYSGFLGSLKQELSKKKKKGKLPKDARQKLLNWWELHFKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPSNGTLYIDGHYITDGHYRLRP 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33267702 33273680 + Sed0018694.1 Sed11g1865 730511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1865 361 Pfam ELK domain 243 264 IPR005539 GO:0003677(InterPro)
Sed11g1865 361 ProSitePatterns 'Homeobox' domain signature. 301 324 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed11g1865 361 SMART ELK_2 243 264 IPR005539 GO:0003677(InterPro)
Sed11g1865 361 SMART HOX_1 265 330 IPR001356 GO:0003677(InterPro)
Sed11g1865 361 FunFam Homeobox protein knotted-1-like 2 268 330 - -
Sed11g1865 361 MobiDBLite consensus disorder prediction 1 48 - -
Sed11g1865 361 Pfam Homeobox KN domain 283 322 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed11g1865 361 ProSiteProfiles 'Homeobox' domain profile. 263 326 IPR001356 GO:0003677(InterPro)
Sed11g1865 361 Pfam KNOX2 domain 154 200 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g1865 361 SMART KNOX1_2 99 143 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g1865 361 MobiDBLite consensus disorder prediction 214 240 - -
Sed11g1865 361 MobiDBLite consensus disorder prediction 211 240 - -
Sed11g1865 361 Pfam KNOX1 domain 100 142 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g1865 361 Gene3D - 268 330 - -
Sed11g1865 361 SMART KNOX2_2 150 201 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g1865 361 SUPERFAMILY Homeodomain-like 264 340 IPR009057 -
Sed11g1865 361 CDD homeodomain 275 327 IPR001356 GO:0003677(InterPro)
Sed11g1865 361 ProSiteProfiles ELK domain profile. 243 263 IPR005539 GO:0003677(InterPro)
Sed11g1865 361 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 99 333 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0901 Sed-Chr11:21878629 Sed11g1865 Sed-Chr11:33267702 4.40E-104 dispersed
Sed11g1865 Sed-Chr11:33267702 Sed13g1843 Sed-Chr13:23357092 6.80E-120 dispersed
Sed11g1865 Sed-Chr11:33267702 Sed13g1842 Sed-Chr13:23357092 4.00E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40021 PF03791 KNOX2 2.50E-24 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1865 - - - 0.0