Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1869 ATGGGTGATCTTGAAAATGAAGAAATGGGTTATGGAAATTCCAATGAGGGGTTAATGAATTGTCCATCTTCAGGAACAATGGCAATGGGTTCTTTCTTTGGGTCTGCTTGGGATCCATTGTTAGGTCAAAGTGAGGATTTTGGAGCAGCTTCTTCAATGGCTTCCTCTCATGGTGGATTTTCAAATCCATTTCCTGTTCAATATCCGACAGATTTGGAGAAGTTGCCATGTTTTGGGAGTGGGAATTATTCAGACATGTTTGGTTCTTCTTCTTCTTCTTTTGGTCTTGCTGGTCAGATTCTTGGAGGGTGTTCTTCAAATTTACCACCATCTGGTGAAGAAGAAGCTGATTTAGGATCACCAAATGGTAGAATCAGAAAACGAGCCCTTGATTCAACTTTCCCATTTAGCCCAAATAAGAAATCTGAAGAAGAGAAAAATGGAAAACAAAAGGATGTTTCTGGGAATAGTTCCAGTTCACAAGAAGAGAAAAATGGAAAACAAGCTAAAGAGAAGTCTAACAATAGTGGAGAAGCTCCCAAAGAAAATTACATTCATGTGAGAGCTAGAAGAGGGCAGGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAACGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGAAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAGTCATTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCAACTGTGAACCCGGACGTGAACATCGACATCGAGAGGATTTTATCCAAAGATAATTTCCAAGCACGGGGCAGCAGCAATGGAACTGTTCTTGGATTTGATCCCGGGTTGAGCACCGTTCCCTCGGTCCCCCCTCATCGAATGTTTCAGTTTCAGGGGACAATGACAACTATGCCAACTACATCCATACAGTTTCCTCCTCTGCGTCAGACTATGTTACAAAGTGATCTTCAAAGTCTTCTACAAATGGGATTCGACTCGGGTTCGGCCATTGACAATTTGGGACCAAATGGGAGGTTGAAACCAGAGCGCTAA 1077 42.43 MGDLENEEMGYGNSNEGLMNCPSSGTMAMGSFFGSAWDPLLGQSEDFGAASSMASSHGGFSNPFPVQYPTDLEKLPCFGSGNYSDMFGSSSSSFGLAGQILGGCSSNLPPSGEEEADLGSPNGRIRKRALDSTFPFSPNKKSEEEKNGKQKDVSGNSSSSQEEKNGKQAKEKSNNSGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIERILSKDNFQARGSSNGTVLGFDPGLSTVPSVPPHRMFQFQGTMTTMPTTSIQFPPLRQTMLQSDLQSLLQMGFDSGSAIDNLGPNGRLKPER 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33289510 33292535 + Sed0003292.1 Sed11g1869 730515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1869 358 FunFam Basic helix-loop-helix transcription factor 190 262 - -
Sed11g1869 358 CDD bHLH_AtBPE_like 183 268 - -
Sed11g1869 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 243 IPR011598 GO:0046983(InterPro)
Sed11g1869 358 MobiDBLite consensus disorder prediction 105 203 - -
Sed11g1869 358 SMART finulus 199 249 IPR011598 GO:0046983(InterPro)
Sed11g1869 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 258 IPR036638 GO:0046983(InterPro)
Sed11g1869 358 Pfam Helix-loop-helix DNA-binding domain 196 244 IPR011598 GO:0046983(InterPro)
Sed11g1869 358 Gene3D - 190 263 IPR036638 GO:0046983(InterPro)
Sed11g1869 358 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 138 325 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed11g1869 358 MobiDBLite consensus disorder prediction 164 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2410 Sed-Chr8:37207905 Sed11g1869 Sed-Chr11:33289510 1.70E-32 dispersed
Sed09g1087 Sed-Chr9:34703580 Sed11g1869 Sed-Chr11:33289510 5.10E-15 dispersed
Sed11g1869 Sed-Chr11:33289510 Sed13g1831 Sed-Chr13:23247158 1.50E-130 dispersed
Sed11g1869 Sed-Chr11:33289510 Sed03g1030 Sed-Chr3:6315514 1.10E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40022 PF00010 HLH 3.50E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1869 - - - 0.0